Wall clock time and date at job start Tue Mar 31 2020 22:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09000 * 109.39835 * 299.89383 * 5 3 2 7 7 C 1.53066 * 109.40410 * 180.14723 * 5 3 2 8 8 C 1.53328 * 108.43948 * 190.97546 * 7 5 3 9 9 C 1.52924 * 108.68136 * 67.50644 * 8 7 5 10 10 N 1.45746 * 110.49438 * 309.26058 * 9 8 7 11 11 C 1.46498 * 117.95187 * 199.07276 * 10 9 8 12 12 C 1.50694 * 109.47449 * 270.02171 * 11 10 9 13 13 O 1.20834 * 119.99793 * 359.97438 * 12 11 10 14 14 O 1.34227 * 120.00116 * 179.97438 * 12 11 10 15 15 C 1.45201 * 116.99985 * 179.97438 * 14 12 11 16 16 H 1.09006 * 109.46795 * 329.99769 * 15 14 12 17 17 C 1.50696 * 109.47220 * 209.99819 * 15 14 12 18 18 H 1.07997 * 119.99838 * 359.97438 * 17 15 14 19 19 C 1.37878 * 120.00090 * 179.97438 * 17 15 14 20 20 N 1.31508 * 120.00054 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 119.99984 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46680 * 60.00483 * 21 19 17 23 23 H 1.48499 * 109.47314 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47296 * 300.00555 * 21 19 17 25 25 C 1.52997 * 109.47181 * 89.99657 * 15 14 12 26 26 C 1.52999 * 117.50050 * 8.61931 * 25 15 14 27 27 C 1.52993 * 60.00173 * 252.50933 * 26 25 15 28 28 C 1.33358 * 124.10403 * 19.09450 * 10 9 8 29 29 O 1.21285 * 118.24616 * 177.76150 * 28 10 9 30 30 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 31 31 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 32 32 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.67482 * 310.70662 * 7 5 3 34 34 H 1.09007 * 109.67113 * 71.24058 * 7 5 3 35 35 H 1.09004 * 109.59254 * 307.75981 * 8 7 5 36 36 H 1.08995 * 109.74139 * 187.35458 * 8 7 5 37 37 H 1.08997 * 109.30234 * 188.94144 * 9 8 7 38 38 H 1.09008 * 109.13240 * 69.46545 * 9 8 7 39 39 H 1.09005 * 109.46792 * 30.01841 * 11 10 9 40 40 H 1.08998 * 109.47197 * 150.01624 * 11 10 9 41 41 H 0.96996 * 120.00046 * 179.97438 * 20 19 17 42 42 H 1.09000 * 115.54987 * 154.33236 * 25 15 14 43 43 H 1.09000 * 117.49579 * 0.02562 * 26 25 15 44 44 H 1.09006 * 117.49625 * 145.01871 * 26 25 15 45 45 H 1.09003 * 117.50101 * 252.50601 * 27 26 25 46 46 H 1.09002 * 117.49606 * 107.48760 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 3.9584 0.7803 0.8824 7 6 3.9984 2.7434 -0.0012 8 6 5.5040 2.8068 -0.2844 9 6 5.7512 2.3524 -1.7235 10 7 5.0901 1.0785 -1.9771 11 6 5.5451 0.2845 -3.1211 12 6 4.7553 0.6692 -4.3455 13 8 3.8998 1.5192 -4.2702 14 8 5.0023 0.0677 -5.5198 15 6 4.2029 0.4881 -6.6567 16 1 3.2210 0.8112 -6.3108 17 6 4.0439 -0.6657 -7.6131 18 1 4.4986 -1.6193 -7.3890 19 6 3.3180 -0.5038 -8.7740 20 7 2.7647 0.6576 -9.0471 21 14 3.1215 -1.9337 -9.9598 22 1 2.4456 -3.0608 -9.2683 23 1 2.3038 -1.5039 -11.1225 24 1 4.4593 -2.3731 -10.4314 25 6 4.9000 1.6487 -7.3692 26 6 6.3208 2.0003 -6.9233 27 6 5.1551 2.9227 -6.5613 28 6 4.0966 0.5905 -1.2332 29 8 3.5949 -0.4627 -1.5651 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.4565 3.2881 -0.7743 34 1 3.7896 3.1840 0.9738 35 1 6.0334 2.1472 0.4033 36 1 5.8598 3.8292 -0.1574 37 1 6.8231 2.2409 -1.8870 38 1 5.3588 3.1045 -2.4081 39 1 6.6039 0.4745 -3.2972 40 1 5.3961 -0.7745 -2.9106 41 1 2.2544 0.7716 -9.8640 42 1 4.6613 1.7627 -8.4266 43 1 6.7589 1.4044 -6.1227 44 1 7.0172 2.3455 -7.6876 45 1 5.0846 3.8749 -7.0872 46 1 4.8263 2.9340 -5.5221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345974561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:43 Heat of formation + Delta-G solvation = -191.531754 kcal Electronic energy + Delta-G solvation = -31133.983829 eV Core-core repulsion = 26796.475853 eV Total energy + Delta-G solvation = -4337.507977 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.47277 -41.58377 -40.75961 -38.33574 -38.01287 -37.36184 -36.51393 -35.27745 -34.89957 -31.49572 -30.40086 -28.99718 -28.77927 -26.12247 -25.41464 -23.76028 -23.19099 -22.72112 -22.14856 -20.89999 -19.82512 -19.16456 -18.92359 -18.66041 -18.16623 -18.02617 -17.65778 -17.60602 -17.13813 -16.69970 -16.29553 -15.88940 -15.65105 -15.26896 -15.04394 -14.74454 -14.61400 -14.37895 -14.34959 -14.10614 -13.56370 -13.36283 -13.28010 -13.14602 -13.04590 -12.87952 -12.79791 -12.50760 -12.33199 -12.30064 -12.22970 -12.01743 -11.99825 -11.86258 -11.71933 -11.55292 -11.36251 -11.06918 -10.94012 -10.50016 -10.44340 -9.96763 -8.29076 -6.45902 0.71691 1.21677 1.32221 1.39374 1.43219 1.50721 1.64239 1.76993 2.18939 2.43523 2.99187 3.14767 3.25135 3.31663 3.69612 3.73814 3.88196 4.04112 4.06155 4.09750 4.16500 4.18194 4.22018 4.24941 4.29604 4.34773 4.46141 4.57974 4.60221 4.76265 4.78686 4.87613 4.96983 4.98015 5.06361 5.18378 5.21979 5.23866 5.30157 5.32181 5.49904 5.55416 5.89643 6.09648 6.17281 6.50825 6.59056 6.84919 6.97609 7.24924 8.78090 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.013109 B = 0.003486 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.454997 B = 8029.601944 C = 9217.583166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.471 3.529 4 O -0.526 6.526 5 C -0.088 4.088 6 H 0.181 0.819 7 C -0.109 4.109 8 C -0.118 4.118 9 C 0.094 3.906 10 N -0.577 5.577 11 C 0.122 3.878 12 C 0.429 3.571 13 O -0.543 6.543 14 O -0.357 6.357 15 C 0.259 3.741 16 H -0.006 1.006 17 C -0.547 4.547 18 H 0.067 0.933 19 C 0.018 3.982 20 N -0.914 5.914 21 Si 0.978 3.022 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.260 1.260 25 C -0.152 4.152 26 C -0.157 4.157 27 C -0.198 4.198 28 C 0.518 3.482 29 O -0.568 6.568 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.127 0.873 33 H 0.053 0.947 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.052 0.948 39 H 0.169 0.831 40 H 0.125 0.875 41 H 0.269 0.731 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.494 3.560 21.385 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.314 3.686 4 O -0.415 6.415 5 C -0.109 4.109 6 H 0.198 0.802 7 C -0.147 4.147 8 C -0.155 4.155 9 C -0.027 4.027 10 N -0.309 5.309 11 C -0.003 4.003 12 C 0.272 3.728 13 O -0.434 6.434 14 O -0.272 6.272 15 C 0.205 3.795 16 H 0.011 0.989 17 C -0.584 4.584 18 H 0.085 0.915 19 C -0.182 4.182 20 N -0.552 5.552 21 Si 0.801 3.199 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.184 1.184 25 C -0.171 4.171 26 C -0.194 4.194 27 C -0.235 4.235 28 C 0.305 3.695 29 O -0.447 6.447 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.145 0.855 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.071 0.929 39 H 0.186 0.814 40 H 0.143 0.857 41 H 0.078 0.922 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.122 0.878 45 H 0.109 0.891 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.626 3.669 21.068 23.059 hybrid contribution -1.447 -0.299 -1.259 1.941 sum 7.179 3.370 19.809 21.338 Atomic orbital electron populations 1.23544 0.75037 1.05613 1.02347 1.86616 1.24737 1.32529 1.82792 1.23484 0.92069 0.81418 0.71620 1.90659 1.67449 1.37023 1.46416 1.21320 0.87624 1.02048 0.99943 0.80155 1.21702 0.97888 0.90011 1.05061 1.21933 0.93717 1.05686 0.94201 1.21994 0.99361 0.82396 0.98911 1.47066 1.35455 1.22523 1.25825 1.21216 0.99888 0.99304 0.79896 1.25083 0.82360 0.78767 0.86574 1.90579 1.33675 1.32950 1.86221 1.86458 1.60509 1.61665 1.18609 1.19637 0.87351 0.93184 0.79323 0.98865 1.21243 1.34655 0.97236 1.05313 0.91472 1.25810 0.94031 0.99223 0.99099 1.70107 1.33779 1.24987 1.26329 0.85304 0.78916 0.78231 0.77404 1.19652 1.20280 1.18413 1.22671 0.98988 0.95085 1.00360 1.22874 0.90738 1.02161 1.03581 1.23085 1.04622 0.94926 1.00905 1.19913 0.79400 0.85182 0.84965 1.90814 1.57191 1.25101 1.71603 0.90233 0.93579 0.85458 0.92856 0.87104 0.87531 0.85887 0.86014 0.92933 0.81360 0.85696 0.92207 0.88100 0.88455 0.87792 0.89091 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.56 113.37 1.20 1.85 16 2 O -0.35 -10.53 9.52 -45.66 -0.43 -10.97 16 3 C 0.47 13.75 7.15 71.23 0.51 14.26 16 4 O -0.53 -17.41 15.54 21.94 0.34 -17.07 16 5 C -0.09 -1.88 2.86 -12.43 -0.04 -1.91 16 6 H 0.18 2.27 8.14 -2.39 -0.02 2.25 16 7 C -0.11 -1.74 4.78 30.73 0.15 -1.60 16 8 C -0.12 -1.03 6.02 30.68 0.18 -0.85 16 9 C 0.09 1.45 6.39 86.50 0.55 2.00 16 10 N -0.58 -14.14 2.30 -830.99 -1.92 -16.05 16 11 C 0.12 3.33 5.79 85.63 0.50 3.82 16 12 C 0.43 17.84 6.96 71.23 0.50 18.34 16 13 O -0.54 -26.49 13.47 21.94 0.30 -26.20 16 14 O -0.36 -17.01 8.39 -51.39 -0.43 -17.44 16 15 C 0.26 14.47 2.41 29.85 0.07 14.54 16 16 H -0.01 -0.42 7.16 -2.38 -0.02 -0.43 16 17 C -0.55 -31.92 8.90 25.60 0.23 -31.69 16 18 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 19 C 0.02 1.04 5.20 84.66 0.44 1.48 16 20 N -0.91 -54.16 11.59 21.45 0.25 -53.91 16 21 Si 0.98 44.07 29.54 68.60 2.03 46.10 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 25 C -0.15 -7.68 5.28 -10.79 -0.06 -7.74 16 26 C -0.16 -6.10 9.79 30.59 0.30 -5.80 16 27 C -0.20 -8.46 9.85 30.59 0.30 -8.16 16 28 C 0.52 14.94 7.01 87.71 0.61 15.55 16 29 O -0.57 -21.73 14.85 13.48 0.20 -21.53 16 30 H 0.08 1.54 8.13 -2.39 -0.02 1.52 16 31 H 0.05 1.23 8.13 -2.38 -0.02 1.21 16 32 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 1.25 7.72 -2.39 -0.02 1.23 16 34 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.11 0.41 8.12 -2.39 -0.02 0.39 16 36 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.12 0.98 7.92 -2.39 -0.02 0.96 16 38 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.17 2.85 7.86 -2.38 -0.02 2.83 16 40 H 0.13 3.54 7.20 -2.39 -0.02 3.52 16 41 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.10 5.65 6.46 -2.39 -0.02 5.64 16 43 H 0.10 3.50 6.90 -2.39 -0.02 3.48 16 44 H 0.10 3.51 8.14 -2.38 -0.02 3.49 16 45 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 46 H 0.08 3.74 5.37 -2.39 -0.01 3.73 16 Total: -1.00 -86.47 379.54 6.77 -79.70 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 1.00 Total: 23.28 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 5.44 Total: 14.09 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -1.67 Total: -69.96 kcal Atomic # 8 Polarization: -93.18 SS G_CDS: -0.03 Total: -93.21 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -86.47 6.77 -79.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345974561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.832 kcal (2) G-P(sol) polarization free energy of solvation -86.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds