Wall clock time and date at job start Tue Mar 31 2020 22:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00464 * 2 1 4 4 C 1.46907 * 110.99934 * 123.95604 * 2 1 3 5 5 C 1.50705 * 109.47306 * 75.23856 * 4 2 1 6 6 C 1.38276 * 119.93564 * 257.01746 * 5 4 2 7 7 C 1.38100 * 120.08146 * 179.76723 * 6 5 4 8 8 C 1.38906 * 119.95266 * 0.53153 * 7 6 5 9 9 N 1.39918 * 120.06015 * 179.70369 * 8 7 6 10 10 C 1.34785 * 119.99595 * 213.00656 * 9 8 7 11 11 O 1.21287 * 120.00209 * 4.96078 * 10 9 8 12 12 C 1.50705 * 119.99705 * 184.95837 * 10 9 8 13 13 H 1.08996 * 109.46956 * 40.00496 * 12 10 9 14 14 N 1.46903 * 109.46495 * 160.00226 * 12 10 9 15 15 C 1.52999 * 109.47157 * 279.99777 * 12 10 9 16 16 C 1.52997 * 109.46996 * 175.00230 * 15 12 10 17 17 C 1.50704 * 109.46886 * 180.02562 * 16 15 12 18 18 H 1.08001 * 120.00028 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99600 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00351 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99781 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46955 * 60.00454 * 21 19 17 23 23 H 1.48500 * 109.47087 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47410 * 300.00362 * 21 19 17 25 25 C 1.38825 * 119.87426 * 359.72274 * 8 7 6 26 26 C 1.38258 * 119.91402 * 0.02562 * 25 8 7 27 27 Cl 1.73599 * 119.97457 * 179.97438 * 26 25 8 28 28 H 1.09002 * 109.46941 * 296.04976 * 1 2 3 29 29 H 1.08994 * 109.46825 * 56.04508 * 1 2 3 30 30 H 1.08997 * 109.47292 * 176.04818 * 1 2 3 31 31 H 1.08994 * 109.46969 * 178.66025 * 3 2 1 32 32 H 1.08997 * 109.46524 * 298.65699 * 3 2 1 33 33 H 1.08999 * 109.46851 * 58.65400 * 3 2 1 34 34 H 1.08993 * 109.47150 * 195.24241 * 4 2 1 35 35 H 1.09008 * 109.46867 * 315.24229 * 4 2 1 36 36 H 1.07995 * 119.96369 * 0.02640 * 6 5 4 37 37 H 1.07996 * 120.02317 * 180.23681 * 7 6 5 38 38 H 0.96997 * 120.00591 * 33.00529 * 9 8 7 39 39 H 1.00895 * 111.00307 * 60.00009 * 14 12 10 40 40 H 1.00905 * 110.99526 * 183.95146 * 14 12 10 41 41 H 1.08997 * 109.47291 * 295.00489 * 15 12 10 42 42 H 1.09001 * 109.46993 * 55.00049 * 15 12 10 43 43 H 1.08997 * 109.47312 * 300.00246 * 16 15 12 44 44 H 1.08995 * 109.47021 * 60.00320 * 16 15 12 45 45 H 0.97003 * 119.99884 * 179.97438 * 20 19 17 46 46 H 1.07998 * 120.04460 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 1.8375 -2.2402 0.8668 6 6 0.8234 -2.9501 1.4829 7 6 0.6729 -4.3000 1.2332 8 6 1.5483 -4.9476 0.3707 9 7 1.4017 -6.3164 0.1210 10 6 2.4884 -7.0791 -0.1116 11 8 3.5981 -6.5990 -0.0159 12 6 2.3246 -8.5285 -0.4906 13 1 1.4848 -8.6317 -1.1778 14 7 3.5518 -9.0060 -1.1418 15 6 2.0592 -9.3578 0.7675 16 6 1.7696 -10.8069 0.3714 17 6 1.5075 -11.6235 1.6106 18 1 1.5443 -11.1558 2.5834 19 6 1.2208 -12.9678 1.5024 20 7 1.1765 -13.5375 0.3179 21 14 0.8967 -13.9802 3.0385 22 1 -0.2734 -13.4210 3.7621 23 1 0.6143 -15.3865 2.6539 24 1 2.0906 -13.9379 3.9204 25 6 2.5690 -4.2341 -0.2427 26 6 2.7115 -2.8817 0.0071 27 17 3.9878 -1.9881 -0.7586 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0849 1.3423 0.0240 32 1 1.6657 1.8871 -0.9018 33 1 1.6267 1.9021 0.8777 34 1 3.0513 -0.5330 1.2752 35 1 1.4443 -0.5014 2.0401 36 1 0.1455 -2.4476 2.1569 37 1 -0.1218 -4.8528 1.7119 38 1 0.5181 -6.7166 0.1152 39 1 4.3454 -8.9206 -0.5247 40 1 3.4442 -9.9564 -1.4633 41 1 2.9354 -9.3262 1.4150 42 1 1.2001 -8.9476 1.2984 43 1 0.8934 -10.8385 -0.2761 44 1 2.6286 -11.2170 -0.1595 45 1 0.9752 -14.4833 0.2419 46 1 3.2514 -4.7348 -0.9134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349896202.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:51 Heat of formation + Delta-G solvation = -20.799308 kcal Electronic energy + Delta-G solvation = -26411.922423 eV Core-core repulsion = 22554.819876 eV Total energy + Delta-G solvation = -3857.102547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.68875 -39.22168 -37.37385 -36.50223 -35.61572 -34.68795 -32.91359 -31.04652 -30.87446 -29.96298 -27.88593 -27.35954 -26.02423 -24.10908 -23.20178 -22.63728 -21.22762 -20.72175 -19.91688 -18.01745 -17.47211 -16.39462 -16.18575 -15.97726 -15.76449 -15.10282 -15.05650 -14.87487 -14.52560 -14.48707 -14.30557 -13.97234 -13.68337 -13.49654 -13.22225 -13.00487 -12.73926 -12.49732 -12.23612 -12.09415 -11.98641 -11.90602 -11.77260 -11.67837 -11.41670 -11.15291 -10.96732 -10.87329 -10.73409 -10.29008 -10.05285 -9.98020 -9.40178 -9.29760 -8.87366 -8.68988 -8.48203 -8.30964 -8.16896 -6.12582 -4.16130 0.94997 1.11817 2.10750 2.67174 3.00448 3.25673 3.30903 3.33043 3.41464 3.84004 4.35710 4.50377 4.54170 4.80159 4.84077 4.86723 4.98350 5.02811 5.07103 5.12272 5.23326 5.23825 5.26861 5.40390 5.43102 5.46010 5.55463 5.60525 5.62153 5.64556 5.93977 6.09995 6.17563 6.19363 6.24881 6.42637 6.65528 6.70361 6.77433 6.79228 7.25675 7.44292 7.48485 7.56558 7.81364 7.84068 8.18645 8.26118 8.89427 9.49039 10.98146 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.023164 B = 0.002064 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.466766 B =13560.470205 C =14316.509141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.537 5.537 3 C 0.026 3.974 4 C 0.096 3.904 5 C -0.097 4.097 6 C -0.083 4.083 7 C -0.147 4.147 8 C 0.172 3.828 9 N -0.677 5.677 10 C 0.525 3.475 11 O -0.512 6.512 12 C 0.077 3.923 13 H 0.101 0.899 14 N -0.830 5.830 15 C -0.139 4.139 16 C 0.025 3.975 17 C -0.526 4.526 18 H 0.054 0.946 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.119 4.119 26 C 0.010 3.990 27 Cl -0.061 7.061 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.415 0.585 39 H 0.347 0.653 40 H 0.357 0.643 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.263 0.737 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.188 27.195 -0.494 27.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.260 5.260 3 C -0.122 4.122 4 C -0.031 4.031 5 C -0.099 4.099 6 C -0.102 4.102 7 C -0.168 4.168 8 C 0.077 3.923 9 N -0.323 5.323 10 C 0.313 3.687 11 O -0.386 6.386 12 C -0.038 4.038 13 H 0.119 0.881 14 N -0.363 5.363 15 C -0.179 4.179 16 C -0.012 4.012 17 C -0.564 4.564 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.140 4.140 26 C -0.018 4.018 27 Cl -0.032 7.032 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.252 0.748 39 H 0.160 0.840 40 H 0.173 0.827 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.229 27.724 -1.599 27.797 hybrid contribution -0.905 -1.196 2.310 2.755 sum -2.134 26.528 0.712 26.623 Atomic orbital electron populations 1.22423 0.87193 1.02565 1.00253 1.61894 1.07992 1.13501 1.42648 1.22381 1.00691 0.88482 1.00607 1.21005 1.01138 0.89384 0.91594 1.19480 0.96133 0.95569 0.98746 1.20718 0.96917 0.93399 0.99183 1.20967 1.01658 0.95289 0.98837 1.17600 0.96209 0.83544 0.94996 1.43687 1.11234 1.06093 1.71283 1.21207 0.83715 0.88834 0.74907 1.90670 1.24898 1.74273 1.48712 1.21485 0.95615 0.88969 0.97754 0.88083 1.58744 1.04017 1.29545 1.43962 1.22419 1.01304 0.99147 0.95000 1.19099 0.97040 0.87968 0.97131 1.21125 1.48407 0.93935 0.92945 0.92756 1.25011 0.95275 0.97970 0.96033 1.69934 1.48775 1.11870 1.22515 0.86635 0.78816 0.79175 0.83258 1.20217 1.21193 1.20209 1.21057 0.99928 0.91756 1.01211 1.20456 0.92432 0.91624 0.97247 1.98356 1.49459 1.75201 1.80150 0.95730 0.91432 0.91102 0.91305 0.91265 0.95791 0.89613 0.93543 0.85204 0.84963 0.74822 0.83999 0.82719 0.92485 0.92472 0.96248 0.96319 0.92774 0.83488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.40 60.07 0.56 0.73 16 2 N -0.54 -4.50 4.94 -252.72 -1.25 -5.75 16 3 C 0.03 0.18 9.57 60.06 0.57 0.75 16 4 C 0.10 0.82 4.49 -4.97 -0.02 0.80 16 5 C -0.10 -1.00 4.84 -104.56 -0.51 -1.51 16 6 C -0.08 -0.76 9.13 -39.62 -0.36 -1.12 16 7 C -0.15 -1.48 9.96 -39.38 -0.39 -1.88 16 8 C 0.17 2.17 6.29 -83.70 -0.53 1.64 16 9 N -0.68 -8.51 5.34 -9.86 -0.05 -8.56 16 10 C 0.53 8.22 6.82 -10.98 -0.07 8.14 16 11 O -0.51 -9.44 13.90 5.55 0.08 -9.36 16 12 C 0.08 1.23 3.21 -68.86 -0.22 1.01 16 13 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 14 N -0.83 -13.59 8.94 -5.65 -0.05 -13.64 16 15 C -0.14 -2.58 4.78 -26.73 -0.13 -2.71 16 16 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 17 C -0.53 -14.09 9.11 -34.44 -0.31 -14.40 16 18 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 21 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C -0.12 -1.64 8.44 -39.36 -0.33 -1.97 16 26 C 0.01 0.13 6.31 -39.52 -0.25 -0.12 16 27 Cl -0.06 -0.72 27.57 -51.86 -1.43 -2.15 16 28 H 0.02 0.15 8.09 -51.93 -0.42 -0.27 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.55 7.17 -51.93 -0.37 0.17 16 31 H 0.07 0.45 7.95 -51.93 -0.41 0.04 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.09 0.75 7.15 -51.93 -0.37 0.38 16 35 H 0.05 0.34 7.79 -51.92 -0.40 -0.07 16 36 H 0.13 0.87 8.01 -52.49 -0.42 0.45 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.42 4.10 8.82 -40.82 -0.36 3.74 16 39 H 0.35 5.77 8.58 -39.29 -0.34 5.43 16 40 H 0.36 5.87 7.55 -39.29 -0.30 5.58 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.15 2.32 6.38 -52.49 -0.33 1.99 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -30.92 392.84 -10.30 -41.22 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.01 Total: 9.88 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -2.22 Total: -8.67 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.62 Total: -52.76 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.43 Total: -2.15 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.92 -10.30 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349896202.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.417 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds