Wall clock time and date at job start Tue Mar 31 2020 22:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99882 * 2 1 4 4 C 1.46906 * 111.00156 * 123.95073 * 2 1 3 5 5 C 1.50703 * 109.46937 * 75.25032 * 4 2 1 6 6 C 1.38286 * 119.92935 * 257.01905 * 5 4 2 7 7 C 1.38101 * 120.07745 * 179.76406 * 6 5 4 8 8 C 1.38901 * 119.95579 * 0.53333 * 7 6 5 9 9 N 1.39925 * 120.06372 * 179.69911 * 8 7 6 10 10 C 1.34773 * 120.00235 * 212.99804 * 9 8 7 11 11 O 1.21291 * 119.99804 * 4.96028 * 10 9 8 12 12 C 1.50701 * 120.00365 * 184.95870 * 10 9 8 13 13 H 1.08997 * 109.46927 * 320.00677 * 12 10 9 14 14 N 1.46900 * 109.47292 * 199.99966 * 12 10 9 15 15 C 1.52999 * 109.46716 * 80.00155 * 12 10 9 16 16 C 1.53004 * 109.47093 * 185.00459 * 15 12 10 17 17 C 1.50694 * 109.47288 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00131 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99921 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00174 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99842 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47111 * 90.00091 * 21 19 17 23 23 H 1.48506 * 109.47029 * 209.99735 * 21 19 17 24 24 H 1.48494 * 109.47377 * 329.99610 * 21 19 17 25 25 C 1.38826 * 119.87451 * 359.72048 * 8 7 6 26 26 C 1.38255 * 119.91586 * 0.02562 * 25 8 7 27 27 Cl 1.73592 * 119.98026 * 180.02562 * 26 25 8 28 28 H 1.09004 * 109.47142 * 296.04288 * 1 2 3 29 29 H 1.08991 * 109.47397 * 56.04774 * 1 2 3 30 30 H 1.09002 * 109.47163 * 176.04973 * 1 2 3 31 31 H 1.08998 * 109.46993 * 178.65784 * 3 2 1 32 32 H 1.08991 * 109.46979 * 298.65737 * 3 2 1 33 33 H 1.09001 * 109.47001 * 58.65820 * 3 2 1 34 34 H 1.09001 * 109.47059 * 195.24520 * 4 2 1 35 35 H 1.09000 * 109.47111 * 315.24686 * 4 2 1 36 36 H 1.07997 * 119.96511 * 0.02562 * 6 5 4 37 37 H 1.07997 * 120.01887 * 180.22969 * 7 6 5 38 38 H 0.96994 * 119.99624 * 32.99900 * 9 8 7 39 39 H 1.00899 * 110.99734 * 300.00184 * 14 12 10 40 40 H 1.00900 * 110.99567 * 63.95214 * 14 12 10 41 41 H 1.09007 * 109.47094 * 304.99916 * 15 12 10 42 42 H 1.09004 * 109.47537 * 65.00415 * 15 12 10 43 43 H 1.09007 * 109.46707 * 299.99694 * 16 15 12 44 44 H 1.08994 * 109.46926 * 59.99571 * 16 15 12 45 45 H 0.97001 * 120.00260 * 180.02562 * 20 19 17 46 46 H 1.07998 * 120.04262 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.8377 -2.2400 0.8668 6 6 0.8235 -2.9501 1.4828 7 6 0.6732 -4.3000 1.2331 8 6 1.5486 -4.9475 0.3707 9 7 1.4023 -6.3164 0.1209 10 6 2.4889 -7.0790 -0.1118 11 8 3.5985 -6.5987 -0.0162 12 6 2.3253 -8.5284 -0.4908 13 1 1.5216 -8.9695 0.0988 14 7 3.5784 -9.2480 -0.2267 15 6 1.9820 -8.6309 -1.9782 16 6 1.6936 -10.0904 -2.3357 17 6 1.3561 -10.1915 -3.8008 18 1 1.3477 -9.3035 -4.4156 19 6 1.0580 -11.4175 -4.3566 20 7 1.0687 -12.4988 -3.6081 21 14 0.6390 -11.5427 -6.1727 22 1 1.8820 -11.7696 -6.9530 23 1 -0.2947 -12.6773 -6.3882 24 1 -0.0034 -10.2811 -6.6206 25 6 2.5694 -4.2339 -0.2427 26 6 2.7118 -2.8816 0.0071 27 17 3.9872 -1.9875 -0.7595 28 1 -0.3634 0.4512 0.9234 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0847 1.3425 0.0241 32 1 1.6655 1.8872 -0.9017 33 1 1.6265 1.9022 0.8777 34 1 3.0513 -0.5328 1.2752 35 1 1.4443 -0.5013 2.0401 36 1 0.1456 -2.4476 2.1568 37 1 -0.1215 -4.8528 1.7118 38 1 0.5187 -6.7166 0.1152 39 1 4.3393 -8.8575 -0.7620 40 1 3.7934 -9.2499 0.7592 41 1 1.1018 -8.0240 -2.1907 42 1 2.8231 -8.2711 -2.5709 43 1 2.5738 -10.6972 -2.1232 44 1 0.8526 -10.4501 -1.7430 45 1 0.8593 -13.3615 -3.9992 46 1 3.2513 -4.7345 -0.9140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349896203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:54 Heat of formation + Delta-G solvation = -19.691018 kcal Electronic energy + Delta-G solvation = -26504.754521 eV Core-core repulsion = 22647.700034 eV Total energy + Delta-G solvation = -3857.054488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.78611 -39.31083 -37.41068 -36.53481 -35.36144 -34.78485 -32.85077 -31.07465 -30.93117 -30.15688 -27.89590 -27.28278 -26.01417 -23.97547 -23.24963 -22.59555 -21.23710 -20.69074 -19.90345 -18.06445 -17.32086 -16.31330 -16.20346 -16.14524 -15.78549 -15.52419 -15.16010 -14.95297 -14.65051 -14.41420 -14.32436 -14.01926 -13.68949 -13.56504 -13.39888 -12.75421 -12.53464 -12.36689 -12.18051 -12.05586 -11.99924 -11.91326 -11.75614 -11.60097 -11.46196 -10.93119 -10.91568 -10.70438 -10.59632 -10.36628 -10.19600 -9.84713 -9.42694 -9.04001 -8.92796 -8.70636 -8.45057 -8.27329 -8.23465 -5.96250 -3.98557 0.89272 1.06743 2.07510 2.53031 2.99975 3.34036 3.36526 3.40399 3.43350 3.81499 4.45938 4.48540 4.49848 4.69851 4.79919 4.83351 4.92533 4.96037 4.99123 5.09543 5.20708 5.24284 5.35056 5.39089 5.39630 5.42142 5.54733 5.56292 5.61637 5.70940 5.88908 6.04381 6.14189 6.18151 6.35732 6.57078 6.63653 6.68656 6.72145 7.01334 7.19192 7.40612 7.69662 7.72888 7.91774 8.04923 8.09349 8.45060 9.09211 9.64913 11.14558 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.002243 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.207127 B =12480.553814 C =12964.347571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.537 5.537 3 C 0.027 3.973 4 C 0.096 3.904 5 C -0.096 4.096 6 C -0.083 4.083 7 C -0.147 4.147 8 C 0.168 3.832 9 N -0.673 5.673 10 C 0.482 3.518 11 O -0.529 6.529 12 C 0.082 3.918 13 H 0.101 0.899 14 N -0.805 5.805 15 C -0.097 4.097 16 C 0.032 3.968 17 C -0.523 4.523 18 H 0.052 0.948 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.117 4.117 26 C 0.010 3.990 27 Cl -0.059 7.059 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.416 0.584 39 H 0.349 0.651 40 H 0.335 0.665 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.036 0.964 44 H 0.013 0.987 45 H 0.260 0.740 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 25.137 13.697 28.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.260 5.260 3 C -0.122 4.122 4 C -0.031 4.031 5 C -0.098 4.098 6 C -0.103 4.103 7 C -0.168 4.168 8 C 0.072 3.928 9 N -0.319 5.319 10 C 0.270 3.730 11 O -0.404 6.404 12 C -0.035 4.035 13 H 0.119 0.881 14 N -0.333 5.333 15 C -0.135 4.135 16 C -0.005 4.005 17 C -0.561 4.561 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.138 4.138 26 C -0.018 4.018 27 Cl -0.030 7.030 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.253 0.747 39 H 0.164 0.836 40 H 0.147 0.853 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.032 0.968 45 H 0.069 0.931 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.633 24.406 12.912 27.619 hybrid contribution -0.592 1.052 0.022 1.208 sum -1.226 25.459 12.934 28.582 Atomic orbital electron populations 1.22424 0.87139 1.02592 1.00280 1.61887 1.08038 1.13539 1.42579 1.22383 1.00680 0.88447 1.00645 1.21004 1.01129 0.89356 0.91625 1.19495 0.96071 0.95602 0.98671 1.20721 0.96892 0.93394 0.99253 1.20940 1.01507 0.95304 0.99041 1.17666 0.96205 0.83848 0.95062 1.43872 1.11410 1.06097 1.70489 1.23174 0.83932 0.91376 0.74555 1.90681 1.25050 1.74791 1.49905 1.21898 0.95491 0.84608 1.01458 0.88067 1.58987 1.05016 1.56986 1.12299 1.21701 1.00119 1.03034 0.88628 1.19015 0.97662 0.88329 0.95522 1.21260 1.46818 0.93173 0.94897 0.92956 1.24988 0.95690 0.95946 0.97699 1.69968 1.49280 0.98477 1.35414 0.86646 0.78266 0.77569 0.85804 1.20695 1.21283 1.19982 1.21052 0.99967 0.91802 1.01008 1.20472 0.92516 0.91623 0.97158 1.98360 1.49432 1.75149 1.80087 0.95736 0.91363 0.91107 0.91311 0.91213 0.95787 0.89626 0.93554 0.85196 0.85054 0.74723 0.83633 0.85270 0.92665 0.92650 0.94602 0.96820 0.93072 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.40 60.06 0.56 0.74 16 2 N -0.54 -4.57 4.94 -252.72 -1.25 -5.82 16 3 C 0.03 0.18 9.57 60.07 0.57 0.75 16 4 C 0.10 0.81 4.49 -4.97 -0.02 0.79 16 5 C -0.10 -0.98 4.84 -104.55 -0.51 -1.49 16 6 C -0.08 -0.73 9.13 -39.61 -0.36 -1.10 16 7 C -0.15 -1.41 9.96 -39.39 -0.39 -1.80 16 8 C 0.17 2.06 6.29 -83.70 -0.53 1.53 16 9 N -0.67 -8.10 5.34 -9.87 -0.05 -8.15 16 10 C 0.48 7.10 6.81 -10.99 -0.07 7.02 16 11 O -0.53 -9.10 13.90 5.55 0.08 -9.02 16 12 C 0.08 1.27 3.15 -68.86 -0.22 1.06 16 13 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 14 N -0.81 -12.82 8.44 -5.65 -0.05 -12.87 16 15 C -0.10 -1.86 4.78 -26.73 -0.13 -1.99 16 16 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 17 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 18 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 21 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 25 C -0.12 -1.62 8.44 -39.36 -0.33 -1.95 16 26 C 0.01 0.13 6.31 -39.52 -0.25 -0.12 16 27 Cl -0.06 -0.72 27.57 -51.86 -1.43 -2.15 16 28 H 0.02 0.15 8.09 -51.93 -0.42 -0.27 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.56 7.17 -51.93 -0.37 0.19 16 31 H 0.07 0.46 7.95 -51.93 -0.41 0.05 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.09 0.73 7.15 -51.93 -0.37 0.36 16 35 H 0.05 0.33 7.79 -51.93 -0.40 -0.08 16 36 H 0.13 0.81 8.01 -52.49 -0.42 0.39 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.42 3.90 8.82 -40.82 -0.36 3.54 16 39 H 0.35 5.66 8.58 -39.29 -0.34 5.33 16 40 H 0.34 4.60 9.06 -39.29 -0.36 4.24 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.04 0.97 7.75 -51.93 -0.40 0.56 16 44 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.15 2.33 6.38 -52.49 -0.33 1.99 16 LS Contribution 394.79 15.07 5.95 5.95 Total: -1.00 -32.36 394.79 -10.37 -42.73 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.12 Total: 7.83 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -2.22 Total: -9.22 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.61 Total: -52.69 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.08 Total: -9.02 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.43 Total: -2.15 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.36 -10.37 -42.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349896203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.040 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds