Wall clock time and date at job start Tue Mar 31 2020 22:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99882 * 2 1 4 4 C 1.46906 * 111.00156 * 123.95073 * 2 1 3 5 5 C 1.50703 * 109.46937 * 75.25032 * 4 2 1 6 6 C 1.38286 * 119.92935 * 257.01905 * 5 4 2 7 7 C 1.38101 * 120.07745 * 179.76406 * 6 5 4 8 8 C 1.38901 * 119.95579 * 0.53333 * 7 6 5 9 9 N 1.39925 * 120.06372 * 179.69911 * 8 7 6 10 10 C 1.34773 * 120.00235 * 212.99804 * 9 8 7 11 11 O 1.21291 * 119.99804 * 4.96028 * 10 9 8 12 12 C 1.50701 * 120.00365 * 184.95870 * 10 9 8 13 13 H 1.08997 * 109.46927 * 320.00677 * 12 10 9 14 14 N 1.46900 * 109.47292 * 199.99966 * 12 10 9 15 15 C 1.52999 * 109.46716 * 80.00155 * 12 10 9 16 16 C 1.53004 * 109.47093 * 185.00459 * 15 12 10 17 17 C 1.50694 * 109.47288 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00131 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99921 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00174 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99842 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47111 * 90.00091 * 21 19 17 23 23 H 1.48506 * 109.47029 * 209.99735 * 21 19 17 24 24 H 1.48494 * 109.47377 * 329.99610 * 21 19 17 25 25 C 1.38826 * 119.87451 * 359.72048 * 8 7 6 26 26 C 1.38255 * 119.91586 * 0.02562 * 25 8 7 27 27 Cl 1.73592 * 119.98026 * 180.02562 * 26 25 8 28 28 H 1.09004 * 109.47142 * 296.04288 * 1 2 3 29 29 H 1.08991 * 109.47397 * 56.04774 * 1 2 3 30 30 H 1.09002 * 109.47163 * 176.04973 * 1 2 3 31 31 H 1.08998 * 109.46993 * 178.65784 * 3 2 1 32 32 H 1.08991 * 109.46979 * 298.65737 * 3 2 1 33 33 H 1.09001 * 109.47001 * 58.65820 * 3 2 1 34 34 H 1.09001 * 109.47059 * 195.24520 * 4 2 1 35 35 H 1.09000 * 109.47111 * 315.24686 * 4 2 1 36 36 H 1.07997 * 119.96511 * 0.02562 * 6 5 4 37 37 H 1.07997 * 120.01887 * 180.22969 * 7 6 5 38 38 H 0.96994 * 119.99624 * 32.99900 * 9 8 7 39 39 H 1.00899 * 110.99734 * 300.00184 * 14 12 10 40 40 H 1.00900 * 110.99567 * 63.95214 * 14 12 10 41 41 H 1.09007 * 109.47094 * 304.99916 * 15 12 10 42 42 H 1.09004 * 109.47537 * 65.00415 * 15 12 10 43 43 H 1.09007 * 109.46707 * 299.99694 * 16 15 12 44 44 H 1.08994 * 109.46926 * 59.99571 * 16 15 12 45 45 H 0.97001 * 120.00260 * 180.02562 * 20 19 17 46 46 H 1.07998 * 120.04262 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.8377 -2.2400 0.8668 6 6 0.8235 -2.9501 1.4828 7 6 0.6732 -4.3000 1.2331 8 6 1.5486 -4.9475 0.3707 9 7 1.4023 -6.3164 0.1209 10 6 2.4889 -7.0790 -0.1118 11 8 3.5985 -6.5987 -0.0162 12 6 2.3253 -8.5284 -0.4908 13 1 1.5216 -8.9695 0.0988 14 7 3.5784 -9.2480 -0.2267 15 6 1.9820 -8.6309 -1.9782 16 6 1.6936 -10.0904 -2.3357 17 6 1.3561 -10.1915 -3.8008 18 1 1.3477 -9.3035 -4.4156 19 6 1.0580 -11.4175 -4.3566 20 7 1.0687 -12.4988 -3.6081 21 14 0.6390 -11.5427 -6.1727 22 1 1.8820 -11.7696 -6.9530 23 1 -0.2947 -12.6773 -6.3882 24 1 -0.0034 -10.2811 -6.6206 25 6 2.5694 -4.2339 -0.2427 26 6 2.7118 -2.8816 0.0071 27 17 3.9872 -1.9875 -0.7595 28 1 -0.3634 0.4512 0.9234 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0847 1.3425 0.0241 32 1 1.6655 1.8872 -0.9017 33 1 1.6265 1.9022 0.8777 34 1 3.0513 -0.5328 1.2752 35 1 1.4443 -0.5013 2.0401 36 1 0.1456 -2.4476 2.1568 37 1 -0.1215 -4.8528 1.7118 38 1 0.5187 -6.7166 0.1152 39 1 4.3393 -8.8575 -0.7620 40 1 3.7934 -9.2499 0.7592 41 1 1.1018 -8.0240 -2.1907 42 1 2.8231 -8.2711 -2.5709 43 1 2.5738 -10.6972 -2.1232 44 1 0.8526 -10.4501 -1.7430 45 1 0.8593 -13.3615 -3.9992 46 1 3.2513 -4.7345 -0.9140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349896203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:53 Heat of formation + Delta-G solvation = -42.554681 kcal Electronic energy + Delta-G solvation = -26505.745964 eV Core-core repulsion = 22647.700034 eV Total energy + Delta-G solvation = -3858.045930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.82333 -40.23159 -38.13176 -37.44477 -36.83116 -35.77092 -34.83078 -31.96085 -31.92889 -31.71658 -28.52965 -28.39982 -27.27420 -25.46575 -24.12401 -23.51419 -22.39355 -21.82890 -21.18353 -19.10702 -18.58336 -18.13708 -17.19740 -17.02585 -16.71725 -16.48135 -16.38040 -16.08366 -15.83314 -15.50155 -15.34016 -15.08805 -14.81230 -14.47207 -14.30587 -14.25015 -13.84844 -13.45685 -13.26959 -13.14612 -12.93666 -12.81280 -12.71223 -12.56612 -12.52311 -12.42340 -12.27308 -12.20006 -11.86186 -11.72155 -11.62878 -11.28979 -11.22017 -10.99822 -10.48630 -9.81471 -9.67799 -9.29011 -9.10366 -8.13755 -6.23497 0.03192 0.21874 1.18258 1.40159 1.42468 1.43320 1.53567 1.98007 2.44608 2.55761 3.19472 3.20678 3.47916 3.69575 3.75152 3.82470 4.06788 4.07205 4.24099 4.27728 4.28970 4.37620 4.43656 4.55924 4.61374 4.71150 4.76192 4.77216 4.80513 4.91546 5.05501 5.07594 5.09447 5.17816 5.24228 5.31856 5.37088 5.57718 5.82004 5.85078 5.99049 6.05261 6.08568 6.14732 6.30664 6.31141 6.49710 6.95113 6.97432 7.44489 8.97233 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.002243 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.207127 B =12480.553814 C =12964.347571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.557 5.557 3 C 0.028 3.972 4 C 0.098 3.902 5 C -0.093 4.093 6 C -0.075 4.075 7 C -0.134 4.134 8 C 0.147 3.853 9 N -0.659 5.659 10 C 0.489 3.511 11 O -0.556 6.556 12 C 0.091 3.909 13 H 0.119 0.881 14 N -0.817 5.817 15 C -0.083 4.083 16 C 0.040 3.960 17 C -0.543 4.543 18 H 0.054 0.946 19 C 0.002 3.998 20 N -0.928 5.928 21 Si 0.957 3.043 22 H -0.277 1.277 23 H -0.281 1.281 24 H -0.265 1.265 25 C -0.141 4.141 26 C -0.006 4.006 27 Cl -0.068 7.068 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.429 0.571 39 H 0.346 0.654 40 H 0.348 0.652 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.007 0.993 44 H -0.002 1.002 45 H 0.262 0.738 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 26.954 14.674 30.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.281 5.281 3 C -0.119 4.119 4 C -0.029 4.029 5 C -0.095 4.095 6 C -0.094 4.094 7 C -0.154 4.154 8 C 0.052 3.948 9 N -0.306 5.306 10 C 0.276 3.724 11 O -0.434 6.434 12 C -0.025 4.025 13 H 0.137 0.863 14 N -0.346 5.346 15 C -0.121 4.121 16 C 0.003 3.997 17 C -0.581 4.581 18 H 0.072 0.928 19 C -0.196 4.196 20 N -0.568 5.568 21 Si 0.782 3.218 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.189 1.189 25 C -0.162 4.162 26 C -0.034 4.034 27 Cl -0.039 7.039 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.184 0.816 37 H 0.181 0.819 38 H 0.269 0.731 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.016 0.984 45 H 0.071 0.929 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.631 26.250 13.902 29.821 hybrid contribution 0.003 0.552 -0.241 0.602 sum -2.628 26.802 13.662 30.198 Atomic orbital electron populations 1.22416 0.86396 1.02322 1.01124 1.61846 1.08882 1.14453 1.42905 1.22373 1.00451 0.87785 1.01324 1.21000 1.01267 0.88171 0.92448 1.19815 0.95474 0.96702 0.97502 1.21150 0.96435 0.93078 0.98695 1.21289 1.00968 0.95710 0.97466 1.17841 0.96978 0.83615 0.96405 1.43645 1.11289 1.06129 1.69487 1.22754 0.84137 0.90892 0.74637 1.90682 1.26301 1.75044 1.51359 1.21667 0.95920 0.85780 0.99159 0.86298 1.58974 1.05058 1.57277 1.13316 1.21414 1.00153 0.99392 0.91191 1.18822 0.95543 0.91287 0.94080 1.21720 1.46521 0.93376 0.96510 0.92789 1.25870 0.95608 0.95658 1.02422 1.70091 1.50261 0.99016 1.37462 0.85571 0.78125 0.77962 0.80110 1.20297 1.20688 1.18887 1.20919 1.00676 0.92703 1.01925 1.20613 0.93226 0.91306 0.98248 1.98347 1.49981 1.75137 1.80399 0.94281 0.91228 0.91785 0.91709 0.90977 0.94583 0.90167 0.91465 0.81618 0.81926 0.73120 0.84055 0.83820 0.91332 0.94004 0.97501 0.98385 0.92932 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.40 127.69 1.20 1.51 16 2 N -0.56 -8.42 4.94 -953.48 -4.71 -13.13 16 3 C 0.03 0.34 9.57 127.69 1.22 1.56 16 4 C 0.10 1.44 4.49 85.56 0.38 1.82 16 5 C -0.09 -1.71 4.84 -19.82 -0.10 -1.80 16 6 C -0.07 -1.05 9.13 22.25 0.20 -0.85 16 7 C -0.13 -2.14 9.96 22.40 0.22 -1.92 16 8 C 0.15 3.42 6.29 38.15 0.24 3.66 16 9 N -0.66 -15.04 5.34 -303.52 -1.62 -16.67 16 10 C 0.49 14.27 6.81 87.66 0.60 14.87 16 11 O -0.56 -19.54 13.90 -3.06 -0.04 -19.59 16 12 C 0.09 2.82 3.15 44.17 0.14 2.95 16 13 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 14 N -0.82 -26.41 8.44 -171.80 -1.45 -27.86 16 15 C -0.08 -3.24 4.78 30.60 0.15 -3.09 16 16 C 0.04 2.02 4.86 29.85 0.15 2.17 16 17 C -0.54 -30.55 9.11 25.60 0.23 -30.31 16 18 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 19 C 0.00 0.13 5.46 84.65 0.46 0.60 16 20 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 21 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 25 C -0.14 -3.95 8.44 22.41 0.19 -3.76 16 26 C -0.01 -0.15 6.31 22.31 0.14 -0.01 16 27 Cl -0.07 -1.66 27.57 -2.72 -0.07 -1.74 16 28 H 0.04 0.35 8.09 -2.38 -0.02 0.33 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.85 7.17 -2.39 -0.02 0.83 16 31 H 0.06 0.80 7.95 -2.39 -0.02 0.78 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.08 1.26 7.15 -2.39 -0.02 1.24 16 35 H 0.07 0.70 7.79 -2.39 -0.02 0.68 16 36 H 0.17 1.19 8.01 -2.91 -0.02 1.16 16 37 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.43 7.16 8.82 -92.71 -0.82 6.34 16 39 H 0.35 11.58 8.58 -89.69 -0.77 10.81 16 40 H 0.35 9.55 9.06 -89.69 -0.81 8.73 16 41 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 43 H 0.01 0.37 7.75 -2.38 -0.02 0.35 16 44 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 46 H 0.11 3.89 6.38 -2.91 -0.02 3.87 16 Total: -1.00 -71.48 394.79 -1.54 -73.02 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -1.38 Total: 27.98 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 5.43 Total: -12.61 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -7.50 Total: -113.44 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.04 Total: -19.59 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.07 Total: -1.74 kcal Total: -71.48 -1.54 -73.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349896203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.466 kcal (2) G-P(sol) polarization free energy of solvation -71.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds