Wall clock time and date at job start Tue Mar 31 2020 22:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00421 * 2 1 4 4 H 1.48504 * 109.46817 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46966 * 120.00007 * 3 2 1 6 6 H 1.48495 * 109.47010 * 240.00113 * 3 2 1 7 7 C 1.37882 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00115 * 186.40233 * 7 2 1 9 9 C 1.50703 * 119.99660 * 6.40261 * 7 2 1 10 10 H 1.08999 * 109.47051 * 33.08026 * 9 7 2 11 11 C 1.50698 * 109.46853 * 153.07817 * 9 7 2 12 12 O 1.21283 * 120.00286 * 119.99889 * 11 9 7 13 13 N 1.34781 * 120.00193 * 299.99923 * 11 9 7 14 14 C 1.46495 * 119.99947 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47301 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.46764 * 59.99982 * 15 14 13 17 17 O 1.42896 * 109.47031 * 300.00232 * 15 14 13 18 18 C 1.52994 * 109.47520 * 179.97438 * 15 14 13 19 19 C 1.50706 * 109.47164 * 184.99848 * 18 15 14 20 20 C 1.38229 * 120.00161 * 269.73157 * 19 18 15 21 21 C 1.38236 * 119.99857 * 179.76618 * 20 19 18 22 22 C 1.38240 * 119.99745 * 0.50848 * 21 20 19 23 23 C 1.38229 * 120.00084 * 359.74576 * 22 21 20 24 24 C 1.38236 * 119.99270 * 90.00351 * 19 18 15 25 25 C 1.50699 * 109.46841 * 273.07397 * 9 7 2 26 26 C 1.38227 * 120.00438 * 306.42918 * 25 9 7 27 27 C 1.38243 * 120.00156 * 179.78916 * 26 25 9 28 28 C 1.38236 * 119.99760 * 0.44252 * 27 26 25 29 29 C 1.38231 * 120.00026 * 359.80819 * 28 27 26 30 30 C 1.38241 * 120.00276 * 359.97438 * 29 28 27 31 31 H 0.96991 * 120.00213 * 175.60544 * 1 2 3 32 32 H 0.96994 * 119.99831 * 359.97438 * 13 11 9 33 33 H 1.08998 * 109.47550 * 299.99848 * 14 13 11 34 34 H 1.09001 * 109.47227 * 59.99932 * 14 13 11 35 35 H 0.96696 * 114.00144 * 299.99666 * 17 15 14 36 36 H 1.08992 * 109.47497 * 305.00499 * 18 15 14 37 37 H 1.09008 * 109.46741 * 65.00300 * 18 15 14 38 38 H 1.08004 * 120.00118 * 359.97438 * 20 19 18 39 39 H 1.07998 * 120.00046 * 180.22586 * 21 20 19 40 40 H 1.08000 * 119.99665 * 179.72547 * 22 21 20 41 41 H 1.08001 * 120.00102 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.00486 * 0.02562 * 24 19 18 43 43 H 1.08005 * 120.00127 * 359.97438 * 26 25 9 44 44 H 1.07993 * 119.99833 * 180.27661 * 27 26 25 45 45 H 1.07997 * 119.99703 * 179.83587 * 28 27 26 46 46 H 1.07996 * 120.00220 * 180.02562 * 29 28 27 47 47 H 1.07990 * 120.00228 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1971 0.1038 9 6 1.2580 -2.4950 -0.1467 10 1 0.3888 -2.3452 -0.7871 11 6 2.1649 -3.5280 -0.7643 12 8 2.4195 -4.5494 -0.1620 13 7 2.6933 -3.3167 -1.9861 14 6 3.5745 -4.3211 -2.5867 15 6 4.0327 -3.8391 -3.9646 16 1 4.5729 -2.8982 -3.8592 17 8 2.8930 -3.6425 -4.8038 18 6 4.9535 -4.8877 -4.5916 19 6 5.5023 -4.3609 -5.8926 20 6 4.8237 -4.5942 -7.0740 21 6 5.3246 -4.1068 -8.2667 22 6 6.5096 -3.3951 -8.2792 23 6 7.1909 -3.1663 -7.0984 24 6 6.6873 -3.6491 -5.9050 25 6 0.8064 -2.9701 1.2103 26 6 1.7227 -3.1018 2.2368 27 6 1.3076 -3.5334 3.4828 28 6 -0.0223 -3.8421 3.6996 29 6 -0.9378 -3.7154 2.6716 30 6 -0.5235 -3.2795 1.4269 31 1 -0.4850 -0.8375 -0.0644 32 1 2.4894 -2.5000 -2.4680 33 1 4.4437 -4.4714 -1.9464 34 1 3.0341 -5.2619 -2.6925 35 1 2.3640 -4.4400 -4.9420 36 1 5.7768 -5.1024 -3.9104 37 1 4.3892 -5.8014 -4.7788 38 1 3.9004 -5.1545 -7.0649 39 1 4.7925 -4.2860 -9.1893 40 1 6.9033 -3.0181 -9.2115 41 1 8.1170 -2.6106 -7.1082 42 1 7.2200 -3.4710 -4.9826 43 1 2.7624 -2.8646 2.0663 44 1 2.0227 -3.6320 4.2860 45 1 -0.3461 -4.1819 4.6723 46 1 -1.9768 -3.9562 2.8411 47 1 -1.2387 -3.1801 0.6239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433976660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:59 Heat of formation + Delta-G solvation = -56.290483 kcal Electronic energy + Delta-G solvation = -28315.231756 eV Core-core repulsion = 24426.730295 eV Total energy + Delta-G solvation = -3888.501461 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.74952 -39.23391 -38.07461 -37.25111 -33.95679 -33.68466 -33.01037 -31.04213 -30.87123 -30.02296 -29.58588 -27.41725 -25.61652 -23.64780 -22.74649 -22.22278 -21.63306 -21.27164 -20.80808 -19.43379 -17.43464 -17.16722 -16.60604 -16.20352 -15.96093 -15.72769 -15.24132 -15.02692 -14.97949 -14.50417 -14.11151 -13.89660 -13.79493 -13.66878 -13.54109 -13.17041 -12.83511 -12.72835 -12.59105 -12.42528 -12.15920 -12.06890 -11.80802 -11.54895 -11.35870 -11.14192 -11.02542 -10.96160 -10.83992 -10.32162 -10.24006 -10.20556 -10.12526 -9.06752 -9.00881 -8.89734 -8.75733 -8.58671 -8.44104 -8.02376 -7.65078 -6.55869 -4.31340 1.18942 1.25529 2.28647 2.33532 3.36091 3.36847 3.55655 3.56639 3.60662 3.87333 4.34646 4.41023 4.48899 4.66308 4.75977 4.82684 4.89533 4.96608 5.01027 5.10050 5.18660 5.29876 5.34945 5.50716 5.55743 5.66007 5.69647 5.75532 5.83489 5.86138 5.88207 6.02649 6.08954 6.21714 6.29968 6.35214 6.40318 6.46349 6.47120 6.62689 6.84715 6.87859 6.97493 7.09449 7.29093 7.35623 7.55832 7.59243 7.83129 7.95820 8.19635 8.29673 8.61774 9.12637 9.40816 10.83113 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.002694 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.237217 B =10392.281303 C =11677.931423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.032 3.968 3 Si 1.068 2.932 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.594 4.594 8 H 0.057 0.943 9 C 0.045 3.955 10 H 0.064 0.936 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.724 5.724 14 C 0.091 3.909 15 C 0.103 3.897 16 H 0.107 0.893 17 O -0.550 6.550 18 C -0.112 4.112 19 C -0.073 4.073 20 C -0.104 4.104 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.018 4.018 26 C -0.078 4.078 27 C -0.133 4.133 28 C -0.146 4.146 29 C -0.129 4.129 30 C -0.127 4.127 31 H 0.273 0.727 32 H 0.410 0.590 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.372 0.628 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 -8.320 -11.807 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.175 4.175 3 Si 0.896 3.104 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.632 4.632 8 H 0.075 0.925 9 C 0.023 3.977 10 H 0.082 0.918 11 C 0.322 3.678 12 O -0.446 6.446 13 N -0.377 5.377 14 C -0.034 4.034 15 C 0.043 3.957 16 H 0.124 0.876 17 O -0.354 6.354 18 C -0.150 4.150 19 C -0.073 4.073 20 C -0.122 4.122 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.020 4.020 26 C -0.096 4.096 27 C -0.151 4.151 28 C -0.164 4.164 29 C -0.147 4.147 30 C -0.146 4.146 31 H 0.085 0.915 32 H 0.245 0.755 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.219 0.781 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.138 -6.793 -11.337 16.068 hybrid contribution -0.018 -1.795 -0.164 1.803 sum 9.120 -8.588 -11.501 17.006 Atomic orbital electron populations 1.70790 1.06834 1.31401 1.43584 1.25860 0.96350 1.02562 0.92746 0.83539 0.75003 0.75144 0.76757 1.20612 1.21297 1.21126 1.21531 0.94686 0.89457 1.57522 0.92470 1.18138 0.95618 0.93472 0.90431 0.91813 1.21324 0.79915 0.86819 0.79759 1.90584 1.62400 1.29487 1.62148 1.45791 1.49912 1.22736 1.19251 1.21881 0.95140 0.92677 0.93741 1.22154 0.86511 0.99274 0.87723 0.87562 1.86652 1.39913 1.38795 1.70069 1.21286 1.00397 0.98703 0.94610 1.19703 0.94819 0.98105 0.94665 1.20997 0.99225 0.99967 0.92031 1.21136 0.96319 0.98400 0.98012 1.21129 0.95812 0.99440 0.98111 1.21122 1.00015 0.99978 0.92700 1.21080 0.96039 0.98318 0.98205 1.20115 0.92512 0.92307 0.97020 1.20784 0.99451 0.97297 0.92106 1.20984 0.95650 1.01415 0.97051 1.20816 0.93785 1.03536 0.98312 1.20880 0.98503 1.01579 0.93720 1.20966 0.95917 1.00782 0.96896 0.91517 0.75458 0.91361 0.92056 0.78118 0.89618 0.90306 0.86236 0.86255 0.86359 0.86207 0.86088 0.87044 0.87425 0.87529 0.87411 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.91 13.63 55.43 0.76 -24.16 16 2 C 0.03 0.84 5.45 -17.82 -0.10 0.75 16 3 Si 1.07 23.64 29.91 -169.99 -5.08 18.56 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.59 -15.14 7.45 -34.44 -0.26 -15.40 16 8 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.04 1.07 1.94 -94.08 -0.18 0.88 16 10 H 0.06 1.58 6.63 -51.93 -0.34 1.23 16 11 C 0.53 11.78 7.04 -10.98 -0.08 11.71 16 12 O -0.57 -13.72 15.43 5.56 0.09 -13.63 16 13 N -0.72 -13.08 5.35 -60.30 -0.32 -13.40 16 14 C 0.09 1.27 5.34 -4.04 -0.02 1.25 16 15 C 0.10 1.16 3.04 -26.73 -0.08 1.08 16 16 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 17 O -0.55 -6.52 12.59 -35.23 -0.44 -6.96 16 18 C -0.11 -1.02 5.03 -27.88 -0.14 -1.16 16 19 C -0.07 -0.73 4.96 -104.62 -0.52 -1.25 16 20 C -0.10 -1.01 9.41 -39.59 -0.37 -1.39 16 21 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 22 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 24 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 25 C -0.02 -0.44 4.17 -104.62 -0.44 -0.88 16 26 C -0.08 -1.81 8.33 -39.58 -0.33 -2.13 16 27 C -0.13 -2.68 10.05 -39.58 -0.40 -3.08 16 28 C -0.15 -2.77 10.05 -39.58 -0.40 -3.16 16 29 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 30 C -0.13 -2.80 9.50 -39.58 -0.38 -3.18 16 31 H 0.27 7.55 6.49 -40.82 -0.26 7.29 16 32 H 0.41 7.42 8.23 -40.82 -0.34 7.08 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.37 3.24 9.05 45.56 0.41 3.65 16 36 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.08 0.62 8.08 -51.92 -0.42 0.20 16 38 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.11 2.62 7.88 -52.48 -0.41 2.21 16 44 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 45 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 46 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 47 H 0.11 2.25 7.96 -52.49 -0.42 1.83 16 LS Contribution 398.99 15.07 6.01 6.01 Total: -1.00 -31.92 398.99 -10.72 -42.64 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -6.06 Total: 15.95 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -5.66 Total: -25.00 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.43 Total: -37.56 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.36 Total: -20.59 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.08 Total: 18.56 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.92 -10.72 -42.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433976660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.653 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds