Wall clock time and date at job start Tue Mar 31 2020 22:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00421 * 2 1 4 4 H 1.48504 * 109.46817 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46966 * 120.00007 * 3 2 1 6 6 H 1.48495 * 109.47010 * 240.00113 * 3 2 1 7 7 C 1.37882 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00115 * 186.40233 * 7 2 1 9 9 C 1.50703 * 119.99660 * 6.40261 * 7 2 1 10 10 H 1.08999 * 109.47051 * 33.08026 * 9 7 2 11 11 C 1.50698 * 109.46853 * 153.07817 * 9 7 2 12 12 O 1.21283 * 120.00286 * 119.99889 * 11 9 7 13 13 N 1.34781 * 120.00193 * 299.99923 * 11 9 7 14 14 C 1.46495 * 119.99947 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47301 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.46764 * 59.99982 * 15 14 13 17 17 O 1.42896 * 109.47031 * 300.00232 * 15 14 13 18 18 C 1.52994 * 109.47520 * 179.97438 * 15 14 13 19 19 C 1.50706 * 109.47164 * 184.99848 * 18 15 14 20 20 C 1.38229 * 120.00161 * 269.73157 * 19 18 15 21 21 C 1.38236 * 119.99857 * 179.76618 * 20 19 18 22 22 C 1.38240 * 119.99745 * 0.50848 * 21 20 19 23 23 C 1.38229 * 120.00084 * 359.74576 * 22 21 20 24 24 C 1.38236 * 119.99270 * 90.00351 * 19 18 15 25 25 C 1.50699 * 109.46841 * 273.07397 * 9 7 2 26 26 C 1.38227 * 120.00438 * 306.42918 * 25 9 7 27 27 C 1.38243 * 120.00156 * 179.78916 * 26 25 9 28 28 C 1.38236 * 119.99760 * 0.44252 * 27 26 25 29 29 C 1.38231 * 120.00026 * 359.80819 * 28 27 26 30 30 C 1.38241 * 120.00276 * 359.97438 * 29 28 27 31 31 H 0.96991 * 120.00213 * 175.60544 * 1 2 3 32 32 H 0.96994 * 119.99831 * 359.97438 * 13 11 9 33 33 H 1.08998 * 109.47550 * 299.99848 * 14 13 11 34 34 H 1.09001 * 109.47227 * 59.99932 * 14 13 11 35 35 H 0.96696 * 114.00144 * 299.99666 * 17 15 14 36 36 H 1.08992 * 109.47497 * 305.00499 * 18 15 14 37 37 H 1.09008 * 109.46741 * 65.00300 * 18 15 14 38 38 H 1.08004 * 120.00118 * 359.97438 * 20 19 18 39 39 H 1.07998 * 120.00046 * 180.22586 * 21 20 19 40 40 H 1.08000 * 119.99665 * 179.72547 * 22 21 20 41 41 H 1.08001 * 120.00102 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.00486 * 0.02562 * 24 19 18 43 43 H 1.08005 * 120.00127 * 359.97438 * 26 25 9 44 44 H 1.07993 * 119.99833 * 180.27661 * 27 26 25 45 45 H 1.07997 * 119.99703 * 179.83587 * 28 27 26 46 46 H 1.07996 * 120.00220 * 180.02562 * 29 28 27 47 47 H 1.07990 * 120.00228 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1971 0.1038 9 6 1.2580 -2.4950 -0.1467 10 1 0.3888 -2.3452 -0.7871 11 6 2.1649 -3.5280 -0.7643 12 8 2.4195 -4.5494 -0.1620 13 7 2.6933 -3.3167 -1.9861 14 6 3.5745 -4.3211 -2.5867 15 6 4.0327 -3.8391 -3.9646 16 1 4.5729 -2.8982 -3.8592 17 8 2.8930 -3.6425 -4.8038 18 6 4.9535 -4.8877 -4.5916 19 6 5.5023 -4.3609 -5.8926 20 6 4.8237 -4.5942 -7.0740 21 6 5.3246 -4.1068 -8.2667 22 6 6.5096 -3.3951 -8.2792 23 6 7.1909 -3.1663 -7.0984 24 6 6.6873 -3.6491 -5.9050 25 6 0.8064 -2.9701 1.2103 26 6 1.7227 -3.1018 2.2368 27 6 1.3076 -3.5334 3.4828 28 6 -0.0223 -3.8421 3.6996 29 6 -0.9378 -3.7154 2.6716 30 6 -0.5235 -3.2795 1.4269 31 1 -0.4850 -0.8375 -0.0644 32 1 2.4894 -2.5000 -2.4680 33 1 4.4437 -4.4714 -1.9464 34 1 3.0341 -5.2619 -2.6925 35 1 2.3640 -4.4400 -4.9420 36 1 5.7768 -5.1024 -3.9104 37 1 4.3892 -5.8014 -4.7788 38 1 3.9004 -5.1545 -7.0649 39 1 4.7925 -4.2860 -9.1893 40 1 6.9033 -3.0181 -9.2115 41 1 8.1170 -2.6106 -7.1082 42 1 7.2200 -3.4710 -4.9826 43 1 2.7624 -2.8646 2.0663 44 1 2.0227 -3.6320 4.2860 45 1 -0.3461 -4.1819 4.6723 46 1 -1.9768 -3.9562 2.8411 47 1 -1.2387 -3.1801 0.6239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433976660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:58 Heat of formation + Delta-G solvation = -75.174634 kcal Electronic energy + Delta-G solvation = -28316.050634 eV Core-core repulsion = 24426.730295 eV Total energy + Delta-G solvation = -3889.320339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.07438 -40.34581 -39.50427 -38.41310 -35.86480 -35.11850 -33.81326 -32.68359 -31.72464 -31.64540 -30.67066 -28.96338 -26.81390 -25.50947 -23.46571 -23.31908 -23.19696 -22.46783 -21.97413 -21.09933 -19.23733 -18.25972 -17.68100 -17.52286 -17.23536 -17.05158 -16.49303 -16.24259 -15.91493 -15.76934 -15.64954 -15.47849 -15.20989 -15.01316 -14.56663 -14.28560 -14.21362 -14.07204 -13.90850 -13.75415 -13.48431 -13.32841 -13.20614 -12.83956 -12.73686 -12.58618 -12.14548 -11.97658 -11.92209 -11.87988 -11.81043 -11.79692 -11.20676 -10.92321 -10.64240 -10.53671 -9.98457 -9.77040 -9.66185 -9.54272 -9.34646 -8.63286 -6.38721 0.47574 0.55230 0.64705 0.70658 1.55605 1.61599 1.80907 1.83461 2.38952 2.57293 2.92110 3.08527 3.21114 3.44497 3.58884 3.92698 4.03048 4.08494 4.11534 4.19528 4.20920 4.21031 4.30875 4.33730 4.38637 4.39572 4.43549 4.65732 4.67747 4.71257 4.75838 4.83377 4.86415 4.89992 5.05142 5.19975 5.22224 5.25253 5.31590 5.56839 5.61404 5.66490 5.68473 5.72099 5.74082 5.74800 6.04660 6.14165 6.17202 6.30489 6.52909 6.66014 6.78154 7.38941 7.42682 8.75835 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.002694 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.237217 B =10392.281303 C =11677.931423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 1.108 2.892 4 H -0.285 1.285 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.591 4.591 8 H 0.048 0.952 9 C 0.044 3.956 10 H 0.046 0.954 11 C 0.530 3.470 12 O -0.591 6.591 13 N -0.713 5.713 14 C 0.090 3.910 15 C 0.118 3.882 16 H 0.095 0.905 17 O -0.563 6.563 18 C -0.102 4.102 19 C -0.087 4.087 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.135 4.135 23 C -0.131 4.131 24 C -0.134 4.134 25 C -0.047 4.047 26 C -0.107 4.107 27 C -0.134 4.134 28 C -0.141 4.141 29 C -0.127 4.127 30 C -0.150 4.150 31 H 0.264 0.736 32 H 0.409 0.591 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.386 0.614 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.093 0.907 44 H 0.138 0.862 45 H 0.150 0.850 46 H 0.143 0.857 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.403 -8.906 -11.678 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.931 3.069 4 H -0.211 1.211 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.628 4.628 8 H 0.066 0.934 9 C 0.022 3.978 10 H 0.064 0.936 11 C 0.319 3.681 12 O -0.473 6.473 13 N -0.364 5.364 14 C -0.034 4.034 15 C 0.059 3.941 16 H 0.113 0.887 17 O -0.370 6.370 18 C -0.140 4.140 19 C -0.087 4.087 20 C -0.134 4.134 21 C -0.150 4.150 22 C -0.153 4.153 23 C -0.149 4.149 24 C -0.152 4.152 25 C -0.048 4.048 26 C -0.126 4.126 27 C -0.152 4.152 28 C -0.158 4.158 29 C -0.144 4.144 30 C -0.169 4.169 31 H 0.075 0.925 32 H 0.245 0.755 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.235 0.765 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.111 0.889 44 H 0.155 0.845 45 H 0.168 0.832 46 H 0.161 0.839 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.618 -7.403 -11.245 16.546 hybrid contribution -0.172 -1.694 -0.214 1.716 sum 9.446 -9.096 -11.460 17.416 Atomic orbital electron populations 1.70879 1.07691 1.30910 1.46026 1.27031 0.96386 1.05571 0.92108 0.83029 0.74270 0.71790 0.77847 1.21104 1.20464 1.18967 1.21631 0.94210 0.90429 1.56542 0.93404 1.18070 0.95151 0.93571 0.90969 0.93645 1.21052 0.80061 0.86195 0.80824 1.90552 1.63426 1.30181 1.63105 1.45741 1.49366 1.23344 1.17964 1.22121 0.94262 0.91951 0.95036 1.21959 0.86633 0.99412 0.86131 0.88692 1.86623 1.40373 1.40168 1.69868 1.21195 1.00211 0.98295 0.94311 1.19834 0.95163 0.98618 0.95046 1.21249 0.99760 1.00233 0.92197 1.21447 0.96611 0.98242 0.98666 1.21450 0.95784 0.99160 0.98905 1.21413 1.00757 1.00070 0.92698 1.21325 0.96393 0.98606 0.98922 1.20182 0.93656 0.94018 0.96900 1.20816 0.98598 0.99474 0.93673 1.21364 0.97231 1.00065 0.96522 1.21313 0.92870 1.01769 0.99886 1.21320 1.00545 0.99918 0.92666 1.21160 0.95340 1.01905 0.98455 0.92524 0.75503 0.91591 0.91324 0.76503 0.88804 0.88770 0.85096 0.84565 0.84471 0.84641 0.85367 0.88868 0.84453 0.83214 0.83945 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.64 13.63 21.45 0.29 -52.35 16 2 C -0.01 -0.50 5.45 84.66 0.46 -0.04 16 3 Si 1.11 47.85 29.91 68.60 2.05 49.90 16 4 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.59 -30.97 7.45 25.60 0.19 -30.78 16 8 H 0.05 2.54 7.82 -2.91 -0.02 2.52 16 9 C 0.04 2.17 1.94 -13.03 -0.03 2.15 16 10 H 0.05 2.38 6.63 -2.39 -0.02 2.36 16 11 C 0.53 24.20 7.04 87.66 0.62 24.82 16 12 O -0.59 -29.30 15.43 -3.04 -0.05 -29.35 16 13 N -0.71 -26.28 5.35 -463.06 -2.48 -28.76 16 14 C 0.09 2.51 5.34 86.38 0.46 2.97 16 15 C 0.12 2.59 3.04 30.59 0.09 2.69 16 16 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 17 O -0.56 -12.92 12.59 -148.98 -1.88 -14.80 16 18 C -0.10 -1.72 5.03 29.85 0.15 -1.57 16 19 C -0.09 -1.65 4.96 -19.87 -0.10 -1.75 16 20 C -0.12 -2.12 9.41 22.27 0.21 -1.91 16 21 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 22 C -0.14 -2.26 10.05 22.27 0.22 -2.04 16 23 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 24 C -0.13 -2.56 9.70 22.27 0.22 -2.34 16 25 C -0.05 -2.28 4.17 -19.87 -0.08 -2.36 16 26 C -0.11 -5.03 8.33 22.27 0.19 -4.85 16 27 C -0.13 -5.20 10.05 22.27 0.22 -4.97 16 28 C -0.14 -4.90 10.05 22.27 0.22 -4.67 16 29 C -0.13 -4.71 10.05 22.27 0.22 -4.49 16 30 C -0.15 -6.68 9.50 22.27 0.21 -6.47 16 31 H 0.26 15.18 6.49 -92.71 -0.60 14.58 16 32 H 0.41 15.16 8.23 -92.71 -0.76 14.40 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.39 6.27 9.05 -74.06 -0.67 5.61 16 36 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 37 H 0.09 1.30 8.08 -2.38 -0.02 1.28 16 38 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 40 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 43 H 0.09 4.56 7.88 -2.91 -0.02 4.54 16 44 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 45 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 46 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 47 H 0.11 4.63 7.96 -2.92 -0.02 4.60 16 Total: -1.00 -70.15 398.99 1.59 -68.55 By element: Atomic # 1 Polarization: 46.82 SS G_CDS: -0.28 Total: 46.54 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 3.93 Total: -39.73 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -2.18 Total: -81.11 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -1.92 Total: -44.14 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.05 Total: 49.90 kcal Total: -70.15 1.59 -68.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433976660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.623 kcal (2) G-P(sol) polarization free energy of solvation -70.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds