Wall clock time and date at job start Tue Mar 31 2020 22:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40453 * 126.82051 * 2 1 4 4 C 1.30714 * 106.79165 * 180.26233 * 3 2 1 5 5 N 1.33247 * 108.94618 * 359.75033 * 4 3 2 6 6 C 1.30831 * 109.82743 * 0.02562 * 5 4 3 7 7 C 1.50706 * 125.95717 * 180.02562 * 6 5 4 8 8 N 1.46893 * 109.47176 * 90.02712 * 7 6 5 9 9 C 1.46903 * 110.99924 * 179.97438 * 8 7 6 10 10 C 1.53780 * 113.61423 * 254.13361 * 9 8 7 11 11 C 1.53961 * 87.01922 * 220.04830 * 10 9 8 12 12 C 1.52999 * 113.53563 * 270.80966 * 11 10 9 13 13 N 1.46496 * 109.47303 * 272.49521 * 12 11 10 14 14 C 1.34777 * 120.00432 * 179.97438 * 13 12 11 15 15 O 1.21283 * 119.99302 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00517 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47154 * 180.02562 * 16 14 13 18 18 C 1.76205 * 99.99752 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99683 * 180.02562 * 18 17 16 21 21 N 1.31638 * 119.99860 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00288 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47340 * 89.99846 * 22 20 18 24 24 H 1.48500 * 109.47349 * 210.00038 * 22 20 18 25 25 H 1.48507 * 109.47101 * 330.00107 * 22 20 18 26 26 C 1.53779 * 113.61309 * 156.52704 * 9 8 7 27 27 H 1.09006 * 109.47064 * 270.16837 * 1 2 3 28 28 H 1.08998 * 109.47663 * 30.16967 * 1 2 3 29 29 H 1.08997 * 109.47002 * 150.17752 * 1 2 3 30 30 H 1.07994 * 125.53055 * 179.78674 * 4 3 2 31 31 H 1.09001 * 109.46953 * 210.02172 * 7 6 5 32 32 H 1.09000 * 109.47318 * 330.01769 * 7 6 5 33 33 H 1.00904 * 110.99720 * 303.94906 * 8 7 6 34 34 H 1.09001 * 112.84709 * 25.32876 * 9 8 7 35 35 H 1.09006 * 113.61359 * 334.56449 * 10 9 8 36 36 H 1.08998 * 113.61291 * 105.47168 * 10 9 8 37 37 H 1.08995 * 113.73912 * 139.94606 * 11 10 9 38 38 H 1.09005 * 109.46858 * 32.49550 * 12 11 10 39 39 H 1.08997 * 109.46760 * 152.49363 * 12 11 10 40 40 H 0.97008 * 119.99812 * 0.02562 * 13 12 11 41 41 H 1.09003 * 109.46673 * 300.00259 * 16 14 13 42 42 H 1.09001 * 109.46989 * 59.99965 * 16 14 13 43 43 H 0.97001 * 119.99710 * 180.02562 * 21 20 18 44 44 H 1.08999 * 113.61637 * 254.52456 * 26 9 8 45 45 H 1.08998 * 113.61678 * 25.34590 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1244 0.0000 4 6 3.5348 0.6767 -0.0057 5 7 3.5096 -0.6556 -0.0038 6 6 2.2707 -1.0760 0.0026 7 6 1.8248 -2.5156 0.0072 8 7 1.6856 -2.9806 1.3936 9 6 1.2507 -4.3831 1.4373 10 6 -0.2215 -4.5591 1.8454 11 6 0.2373 -5.7715 2.6760 12 6 0.2312 -7.0860 1.8930 13 7 -1.0945 -7.7027 1.9843 14 6 -1.3360 -8.8760 1.3667 15 8 -0.4555 -9.4215 0.7356 16 6 -2.6998 -9.5102 1.4601 17 16 -2.7068 -11.0652 0.5340 18 6 -4.3712 -11.5758 0.8062 19 1 -5.0334 -10.9640 1.4006 20 6 -4.8311 -12.7644 0.2566 21 7 -6.0746 -13.1457 0.4595 22 14 -3.6855 -13.8232 -0.7711 23 1 -2.9831 -14.7911 0.1093 24 1 -4.4746 -14.5623 -1.7891 25 1 -2.6880 -12.9578 -1.4505 26 6 1.6200 -5.1022 2.7454 27 1 -0.3633 0.0030 1.0277 28 1 -0.3634 0.8884 -0.5164 29 1 -0.3633 -0.8916 -0.5111 30 1 4.4254 1.2874 -0.0106 31 1 0.8650 -2.6002 -0.5024 32 1 2.5652 -3.1270 -0.5086 33 1 2.5453 -2.8522 1.9061 34 1 1.5247 -4.9393 0.5408 35 1 -0.6085 -3.7378 2.4487 36 1 -0.8767 -4.8206 1.0144 37 1 -0.2575 -5.8530 3.6437 38 1 0.4683 -6.8874 0.8478 39 1 0.9762 -7.7621 2.3125 40 1 -1.7988 -7.2662 2.4888 41 1 -2.9371 -9.7090 2.5053 42 1 -3.4445 -8.8337 1.0408 43 1 -6.3959 -13.9766 0.0756 44 1 2.4493 -5.8016 2.6401 45 1 1.7389 -4.4296 3.5949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479754747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:16 Heat of formation + Delta-G solvation = 74.544666 kcal Electronic energy + Delta-G solvation = -25409.653329 eV Core-core repulsion = 21591.021665 eV Total energy + Delta-G solvation = -3818.631664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.52986 -40.20173 -38.90800 -35.79761 -34.47018 -33.94334 -32.45381 -31.59348 -29.91552 -28.08423 -27.14631 -26.25443 -25.70318 -25.41260 -22.86620 -22.44223 -20.91666 -20.50337 -19.26063 -17.82417 -17.62487 -17.00102 -16.40263 -16.39146 -16.01229 -15.50840 -15.42289 -15.18384 -15.00072 -14.95226 -14.42054 -13.88921 -13.85251 -13.65790 -13.50429 -13.44808 -13.07940 -12.81246 -12.73397 -12.57527 -12.25448 -12.16782 -11.81681 -11.32296 -11.25364 -11.02278 -10.89030 -10.67160 -10.61311 -10.47019 -10.17764 -10.04566 -9.87242 -9.54998 -9.12200 -9.02935 -8.96315 -8.51934 -6.93648 -6.30547 -4.02440 1.11541 1.85868 2.46613 2.74358 2.95226 3.27994 3.32565 3.42310 3.49052 3.62387 3.82963 4.03034 4.05953 4.26603 4.29215 4.32021 4.37066 4.40806 4.56023 4.67241 4.72911 4.83417 4.90878 4.98233 5.08563 5.10879 5.12929 5.26466 5.35977 5.37492 5.50516 5.64649 5.66776 5.74234 5.79935 5.81317 5.92524 5.99357 5.99518 6.27705 6.42709 6.50963 6.69395 7.58798 7.65111 7.92491 8.39931 8.46712 9.15676 10.78638 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.001587 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.923418 B =17642.258137 C =17894.948740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.367 5.367 3 N -0.322 5.322 4 C 0.199 3.801 5 N -0.543 5.543 6 C 0.282 3.718 7 C 0.135 3.865 8 N -0.672 5.672 9 C 0.057 3.943 10 C -0.121 4.121 11 C -0.124 4.124 12 C 0.138 3.862 13 N -0.735 5.735 14 C 0.530 3.470 15 O -0.521 6.521 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.130 4.130 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.218 0.782 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.351 0.649 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.074 0.926 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.258 27.309 3.282 31.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.157 5.157 3 N -0.150 5.150 4 C -0.104 4.104 5 N -0.271 5.271 6 C 0.005 3.995 7 C 0.003 3.997 8 N -0.305 5.305 9 C -0.053 4.053 10 C -0.159 4.159 11 C -0.143 4.143 12 C 0.014 3.986 13 N -0.390 5.390 14 C 0.316 3.684 15 O -0.395 6.395 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.168 4.168 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.234 0.766 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.171 0.829 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.954 27.085 2.245 31.514 hybrid contribution -0.503 -0.178 0.334 0.629 sum 15.451 26.907 2.579 31.135 Atomic orbital electron populations 1.21987 0.73395 1.04753 1.04360 1.50206 1.08176 1.03811 1.53556 1.78074 1.02183 1.08297 1.26456 1.25958 0.95824 0.90340 0.98303 1.70481 1.19628 1.11740 1.25286 1.24146 0.86172 0.92487 0.96739 1.20431 1.01763 0.85309 0.92185 1.60654 1.38389 1.20185 1.11318 1.23186 0.97367 0.86636 0.98090 1.23161 0.95624 0.97289 0.99864 1.22454 0.98105 0.93731 1.00003 1.21088 0.85278 0.92194 1.00000 1.45935 1.13885 1.23571 1.55570 1.20282 0.89894 0.80088 0.78150 1.90702 1.46477 1.62005 1.40366 1.23277 0.96201 1.02398 1.05604 1.84794 1.18759 1.20860 1.67198 1.22318 0.94666 1.10977 1.38990 0.89386 1.24713 0.94903 0.96506 0.95164 1.69942 1.14913 1.23089 1.43728 0.86734 0.81872 0.81996 0.81242 1.19203 1.19937 1.15936 1.23170 0.97007 0.99064 0.97588 0.89681 0.89063 0.88846 0.76600 0.88578 0.90929 0.82945 0.90116 0.89042 0.91126 0.89307 0.91540 0.91352 0.76599 0.88498 0.88470 0.91940 0.90765 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.42 11.33 59.85 0.68 1.09 16 2 N -0.37 -2.94 4.04 -65.10 -0.26 -3.20 16 3 N -0.32 -3.13 12.70 29.29 0.37 -2.75 16 4 C 0.20 1.72 13.03 -91.81 -1.20 0.52 16 5 N -0.54 -5.24 11.19 -11.97 -0.13 -5.37 16 6 C 0.28 2.28 7.50 -155.70 -1.17 1.12 16 7 C 0.13 0.77 5.86 -4.98 -0.03 0.74 16 8 N -0.67 -3.71 6.54 -107.13 -0.70 -4.41 16 9 C 0.06 0.31 3.77 -66.90 -0.25 0.06 16 10 C -0.12 -0.70 7.42 -25.82 -0.19 -0.89 16 11 C -0.12 -0.78 3.95 -89.71 -0.35 -1.14 16 12 C 0.14 1.33 5.35 -4.04 -0.02 1.31 16 13 N -0.74 -8.48 5.56 -60.30 -0.33 -8.81 16 14 C 0.53 8.98 7.85 -10.99 -0.09 8.90 16 15 O -0.52 -10.92 15.86 5.56 0.09 -10.83 16 16 C -0.12 -2.32 6.16 36.00 0.22 -2.10 16 17 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 18 C -0.52 -14.88 10.04 30.94 0.31 -14.56 16 19 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 20 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 21 N -0.88 -26.33 13.97 55.49 0.78 -25.56 16 22 Si 0.86 21.59 27.74 -169.99 -4.71 16.88 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 26 C -0.13 -0.70 7.26 -25.92 -0.19 -0.89 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.23 7.10 -51.93 -0.37 -0.14 16 30 H 0.22 1.07 8.06 -52.49 -0.42 0.64 16 31 H 0.10 0.42 7.12 -51.93 -0.37 0.05 16 32 H 0.07 0.42 8.13 -51.93 -0.42 -0.01 16 33 H 0.35 2.07 8.56 -39.29 -0.34 1.73 16 34 H 0.08 0.48 7.46 -51.93 -0.39 0.10 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.69 7.39 -51.93 -0.38 0.31 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.40 3.50 8.47 -40.82 -0.35 3.15 16 41 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 42 H 0.10 1.68 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -36.59 392.06 -10.21 -46.80 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.84 Total: 0.07 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.37 Total: -3.16 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.29 Total: -50.11 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.59 -10.21 -46.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479754747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.342 kcal (2) G-P(sol) polarization free energy of solvation -36.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds