Wall clock time and date at job start Tue Mar 31 2020 22:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40453 * 126.82051 * 2 1 4 4 C 1.30714 * 106.79165 * 180.26233 * 3 2 1 5 5 N 1.33247 * 108.94618 * 359.75033 * 4 3 2 6 6 C 1.30831 * 109.82743 * 0.02562 * 5 4 3 7 7 C 1.50706 * 125.95717 * 180.02562 * 6 5 4 8 8 N 1.46893 * 109.47176 * 90.02712 * 7 6 5 9 9 C 1.46903 * 110.99924 * 179.97438 * 8 7 6 10 10 C 1.53780 * 113.61423 * 254.13361 * 9 8 7 11 11 C 1.53961 * 87.01922 * 220.04830 * 10 9 8 12 12 C 1.52999 * 113.53563 * 270.80966 * 11 10 9 13 13 N 1.46496 * 109.47303 * 272.49521 * 12 11 10 14 14 C 1.34777 * 120.00432 * 179.97438 * 13 12 11 15 15 O 1.21283 * 119.99302 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00517 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47154 * 180.02562 * 16 14 13 18 18 C 1.76205 * 99.99752 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00464 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99683 * 180.02562 * 18 17 16 21 21 N 1.31638 * 119.99860 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00288 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47340 * 89.99846 * 22 20 18 24 24 H 1.48500 * 109.47349 * 210.00038 * 22 20 18 25 25 H 1.48507 * 109.47101 * 330.00107 * 22 20 18 26 26 C 1.53779 * 113.61309 * 156.52704 * 9 8 7 27 27 H 1.09006 * 109.47064 * 270.16837 * 1 2 3 28 28 H 1.08998 * 109.47663 * 30.16967 * 1 2 3 29 29 H 1.08997 * 109.47002 * 150.17752 * 1 2 3 30 30 H 1.07994 * 125.53055 * 179.78674 * 4 3 2 31 31 H 1.09001 * 109.46953 * 210.02172 * 7 6 5 32 32 H 1.09000 * 109.47318 * 330.01769 * 7 6 5 33 33 H 1.00904 * 110.99720 * 303.94906 * 8 7 6 34 34 H 1.09001 * 112.84709 * 25.32876 * 9 8 7 35 35 H 1.09006 * 113.61359 * 334.56449 * 10 9 8 36 36 H 1.08998 * 113.61291 * 105.47168 * 10 9 8 37 37 H 1.08995 * 113.73912 * 139.94606 * 11 10 9 38 38 H 1.09005 * 109.46858 * 32.49550 * 12 11 10 39 39 H 1.08997 * 109.46760 * 152.49363 * 12 11 10 40 40 H 0.97008 * 119.99812 * 0.02562 * 13 12 11 41 41 H 1.09003 * 109.46673 * 300.00259 * 16 14 13 42 42 H 1.09001 * 109.46989 * 59.99965 * 16 14 13 43 43 H 0.97001 * 119.99710 * 180.02562 * 21 20 18 44 44 H 1.08999 * 113.61637 * 254.52456 * 26 9 8 45 45 H 1.08998 * 113.61678 * 25.34590 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1244 0.0000 4 6 3.5348 0.6767 -0.0057 5 7 3.5096 -0.6556 -0.0038 6 6 2.2707 -1.0760 0.0026 7 6 1.8248 -2.5156 0.0072 8 7 1.6856 -2.9806 1.3936 9 6 1.2507 -4.3831 1.4373 10 6 -0.2215 -4.5591 1.8454 11 6 0.2373 -5.7715 2.6760 12 6 0.2312 -7.0860 1.8930 13 7 -1.0945 -7.7027 1.9843 14 6 -1.3360 -8.8760 1.3667 15 8 -0.4555 -9.4215 0.7356 16 6 -2.6998 -9.5102 1.4601 17 16 -2.7068 -11.0652 0.5340 18 6 -4.3712 -11.5758 0.8062 19 1 -5.0334 -10.9640 1.4006 20 6 -4.8311 -12.7644 0.2566 21 7 -6.0746 -13.1457 0.4595 22 14 -3.6855 -13.8232 -0.7711 23 1 -2.9831 -14.7911 0.1093 24 1 -4.4746 -14.5623 -1.7891 25 1 -2.6880 -12.9578 -1.4505 26 6 1.6200 -5.1022 2.7454 27 1 -0.3633 0.0030 1.0277 28 1 -0.3634 0.8884 -0.5164 29 1 -0.3633 -0.8916 -0.5111 30 1 4.4254 1.2874 -0.0106 31 1 0.8650 -2.6002 -0.5024 32 1 2.5652 -3.1270 -0.5086 33 1 2.5453 -2.8522 1.9061 34 1 1.5247 -4.9393 0.5408 35 1 -0.6085 -3.7378 2.4487 36 1 -0.8767 -4.8206 1.0144 37 1 -0.2575 -5.8530 3.6437 38 1 0.4683 -6.8874 0.8478 39 1 0.9762 -7.7621 2.3125 40 1 -1.7988 -7.2662 2.4888 41 1 -2.9371 -9.7090 2.5053 42 1 -3.4445 -8.8337 1.0408 43 1 -6.3959 -13.9766 0.0756 44 1 2.4493 -5.8016 2.6401 45 1 1.7389 -4.4296 3.5949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479754747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:15 Heat of formation + Delta-G solvation = 48.079638 kcal Electronic energy + Delta-G solvation = -25410.800939 eV Core-core repulsion = 21591.021665 eV Total energy + Delta-G solvation = -3819.779274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.10969 -40.98609 -39.95792 -36.43319 -35.16877 -34.75744 -34.65380 -32.24196 -31.21843 -28.64733 -27.96989 -27.68852 -26.73369 -26.11266 -23.41525 -23.01970 -21.78160 -21.44502 -20.14292 -19.49749 -18.15007 -17.78054 -17.62561 -17.14504 -17.00138 -16.81726 -16.46091 -16.14943 -15.90112 -15.57941 -15.47315 -15.01722 -14.91183 -14.70987 -14.60149 -14.05364 -14.00043 -13.79516 -13.49677 -13.33230 -13.15022 -13.04886 -13.00094 -12.73791 -12.69482 -12.48177 -11.90633 -11.81005 -11.39163 -11.18224 -11.16057 -11.10336 -10.94983 -10.77676 -10.59857 -10.51829 -10.08610 -9.52864 -8.98107 -8.50581 -6.21176 0.53807 1.01040 1.32311 1.39083 1.47997 1.57670 1.59897 1.86150 2.24411 2.28995 2.73616 2.87827 2.94166 3.36652 3.57131 3.58671 3.73207 3.79868 3.80680 3.91599 3.99354 4.19599 4.25883 4.33461 4.37617 4.46090 4.50046 4.55597 4.63242 4.70327 4.77140 4.86069 4.97282 5.05238 5.18999 5.25568 5.27966 5.35555 5.42922 5.51616 5.71703 5.78575 5.98067 6.12537 6.23971 6.51699 6.94851 7.05771 7.23537 8.61686 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.024731 B = 0.001587 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.923418 B =17642.258137 C =17894.948740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.370 5.370 3 N -0.352 5.352 4 C 0.192 3.808 5 N -0.571 5.571 6 C 0.278 3.722 7 C 0.139 3.861 8 N -0.669 5.669 9 C 0.059 3.941 10 C -0.114 4.114 11 C -0.117 4.117 12 C 0.138 3.862 13 N -0.709 5.709 14 C 0.534 3.466 15 O -0.566 6.566 16 C -0.112 4.112 17 S -0.178 6.178 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.263 1.263 24 H -0.260 1.260 25 H -0.237 1.237 26 C -0.123 4.123 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.242 0.758 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.349 0.651 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.417 0.583 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.277 0.723 44 H 0.072 0.928 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.872 28.415 3.698 32.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.161 5.161 3 N -0.180 5.180 4 C -0.110 4.110 5 N -0.300 5.300 6 C 0.001 3.999 7 C 0.007 3.993 8 N -0.301 5.301 9 C -0.051 4.051 10 C -0.152 4.152 11 C -0.136 4.136 12 C 0.014 3.986 13 N -0.362 5.362 14 C 0.319 3.681 15 O -0.444 6.444 16 C -0.262 4.262 17 S 0.048 5.952 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.188 1.188 24 H -0.184 1.184 25 H -0.160 1.160 26 C -0.162 4.162 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.132 0.868 30 H 0.258 0.742 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.168 0.832 34 H 0.094 0.906 35 H 0.117 0.883 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.254 0.746 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.534 28.240 2.695 32.835 hybrid contribution -0.703 -0.366 0.301 0.848 sum 15.831 27.874 2.996 32.196 Atomic orbital electron populations 1.22274 0.71574 1.06065 1.05217 1.50439 1.09243 1.03342 1.53037 1.78006 1.02844 1.09620 1.27578 1.26525 0.96498 0.90445 0.97579 1.70476 1.20772 1.12344 1.26404 1.24521 0.86004 0.93312 0.96027 1.20501 1.02456 0.83914 0.92403 1.60658 1.38261 1.20084 1.11123 1.23155 0.97330 0.86546 0.98046 1.23119 0.95518 0.96971 0.99575 1.22332 0.99170 0.92079 1.00009 1.21217 0.83594 0.93431 1.00311 1.45716 1.15291 1.21579 1.53646 1.19940 0.88498 0.81256 0.78369 1.90692 1.47367 1.63619 1.42768 1.23277 0.98281 0.99248 1.05439 1.84725 1.16135 1.25233 1.69059 1.22472 0.96152 1.10800 1.38231 0.91898 1.25555 0.96274 0.97798 0.96306 1.70020 1.16475 1.23969 1.45020 0.85873 0.80095 0.80367 0.80073 1.18765 1.18404 1.16048 1.23151 0.96279 0.98906 0.97835 0.88981 0.88580 0.86790 0.74172 0.87006 0.91062 0.83162 0.90551 0.88327 0.91582 0.88162 0.92091 0.92257 0.74565 0.86868 0.86726 0.91404 0.90932 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 11.33 127.77 1.45 2.07 16 2 N -0.37 -5.54 4.04 -359.87 -1.45 -6.99 16 3 N -0.35 -6.66 12.70 -61.24 -0.78 -7.43 16 4 C 0.19 3.23 13.03 180.76 2.36 5.59 16 5 N -0.57 -10.69 11.19 -191.77 -2.15 -12.84 16 6 C 0.28 4.22 7.50 138.23 1.04 5.26 16 7 C 0.14 1.35 5.86 85.56 0.50 1.85 16 8 N -0.67 -6.01 6.54 -492.85 -3.22 -9.24 16 9 C 0.06 0.51 3.77 45.44 0.17 0.68 16 10 C -0.11 -0.97 7.42 31.18 0.23 -0.74 16 11 C -0.12 -1.14 3.95 -10.21 -0.04 -1.18 16 12 C 0.14 2.36 5.35 86.38 0.46 2.82 16 13 N -0.71 -14.57 5.56 -463.07 -2.57 -17.14 16 14 C 0.53 17.21 7.85 87.66 0.69 17.90 16 15 O -0.57 -23.27 15.86 -3.04 -0.05 -23.32 16 16 C -0.11 -4.00 6.16 71.23 0.44 -3.56 16 17 S -0.18 -8.82 18.55 -56.49 -1.05 -9.87 16 18 C -0.53 -30.37 10.04 67.95 0.68 -29.68 16 19 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 20 C 0.05 2.68 5.50 84.86 0.47 3.14 16 21 N -0.92 -55.29 13.97 21.65 0.30 -54.98 16 22 Si 0.91 44.54 27.74 68.60 1.90 46.44 16 23 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.24 -11.50 6.74 99.48 0.67 -10.83 16 26 C -0.12 -1.02 7.26 31.12 0.23 -0.79 16 27 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.11 0.28 7.10 -2.39 -0.02 0.26 16 30 H 0.24 2.23 8.06 -2.91 -0.02 2.20 16 31 H 0.11 0.71 7.12 -2.39 -0.02 0.70 16 32 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 33 H 0.35 3.52 8.56 -89.69 -0.77 2.75 16 34 H 0.08 0.76 7.46 -2.39 -0.02 0.75 16 35 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.07 0.66 8.10 -2.39 -0.02 0.64 16 37 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 1.16 7.39 -2.38 -0.02 1.15 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.42 5.89 8.47 -92.70 -0.79 5.11 16 41 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 42 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 43 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.07 0.66 8.10 -2.39 -0.02 0.64 16 45 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -79.68 392.06 -0.97 -80.65 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -0.57 Total: 11.39 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 8.67 Total: 3.34 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -9.87 Total: -108.62 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.90 Total: 46.44 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.05 Total: -9.87 kcal Total: -79.68 -0.97 -80.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479754747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.725 kcal (2) G-P(sol) polarization free energy of solvation -79.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds