Wall clock time and date at job start Tue Mar 31 2020 22:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35315 * 125.87191 * 2 1 4 4 C 1.35344 * 106.17731 * 179.73450 * 3 2 1 5 5 C 1.50700 * 126.75152 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47204 * 95.00226 * 5 4 3 7 7 C 1.46896 * 111.00388 * 179.97438 * 6 5 4 8 8 H 1.08998 * 112.84836 * 336.19780 * 7 6 5 9 9 C 1.53780 * 113.61283 * 107.49948 * 7 6 5 10 10 C 1.53783 * 87.08218 * 139.98710 * 9 7 6 11 11 H 1.09000 * 113.69215 * 89.12402 * 10 9 7 12 12 C 1.53002 * 113.61662 * 220.02174 * 10 9 7 13 13 N 1.46494 * 109.47126 * 272.49419 * 12 10 9 14 14 C 1.34775 * 120.00373 * 179.97438 * 13 12 10 15 15 O 1.21279 * 119.99479 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00189 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.46965 * 180.02562 * 16 14 13 18 18 C 1.76207 * 99.99758 * 179.97438 * 17 16 14 19 19 H 1.07991 * 120.00318 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99670 * 179.97438 * 18 17 16 21 21 N 1.31636 * 120.00354 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00145 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46869 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47421 * 120.00189 * 22 20 18 25 25 H 1.48494 * 109.47213 * 240.00578 * 22 20 18 26 26 C 1.53775 * 113.61969 * 204.99789 * 7 6 5 27 27 N 1.33776 * 106.49718 * 359.97438 * 4 3 2 28 28 N 1.28633 * 108.88517 * 359.97438 * 27 4 3 29 29 H 1.08995 * 109.46919 * 89.99924 * 1 2 3 30 30 H 1.08994 * 109.47112 * 210.00563 * 1 2 3 31 31 H 1.08996 * 109.46711 * 330.00521 * 1 2 3 32 32 H 1.07998 * 126.90946 * 359.75328 * 3 2 1 33 33 H 1.09006 * 109.47160 * 215.00110 * 5 4 3 34 34 H 1.08999 * 109.46999 * 334.99845 * 5 4 3 35 35 H 1.00903 * 111.00353 * 56.04445 * 6 5 4 36 36 H 1.09002 * 113.61819 * 254.53249 * 9 7 6 37 37 H 1.09002 * 113.61540 * 25.43817 * 9 7 6 38 38 H 1.09001 * 109.46633 * 32.49103 * 12 10 9 39 39 H 1.08994 * 109.47081 * 152.48960 * 12 10 9 40 40 H 0.96998 * 119.99708 * 359.97438 * 13 12 10 41 41 H 1.09001 * 109.47247 * 299.99686 * 16 14 13 42 42 H 1.08994 * 109.47044 * 60.00316 * 16 14 13 43 43 H 0.96998 * 119.99858 * 179.97438 * 21 20 18 44 44 H 1.09002 * 113.61372 * 334.56899 * 26 7 6 45 45 H 1.09004 * 113.61448 * 105.46421 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5322 0.6404 0.0060 5 6 4.7881 1.4733 0.0090 6 7 5.2575 1.6465 1.3901 7 6 6.4833 2.4549 1.4321 8 1 7.0396 2.4292 0.4951 9 6 6.2667 3.8741 1.9833 10 6 7.6056 3.7070 2.7212 11 1 8.4698 4.0248 2.1378 12 6 7.6006 4.2839 4.1383 13 7 7.9658 5.7017 4.0897 14 6 8.0264 6.4215 5.2275 15 8 7.7791 5.8951 6.2918 16 6 8.4025 7.8799 5.1775 17 16 8.3965 8.5623 6.8540 18 6 8.8577 10.2274 6.5081 19 1 9.0450 10.5356 5.4902 20 6 8.9793 11.1432 7.5439 21 7 8.7506 10.7678 8.7847 22 14 9.4675 12.9086 7.1774 23 1 9.6672 13.0735 5.7151 24 1 8.3934 13.8250 7.6373 25 1 10.7309 13.2306 7.8882 26 6 7.3533 2.1909 2.6724 27 7 3.4576 -0.6953 0.0099 28 7 2.2192 -1.0431 0.0071 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3632 0.8900 0.5137 32 1 1.9382 2.1281 -0.0037 33 1 5.5585 0.9713 -0.5763 34 1 4.5778 2.4493 -0.4284 35 1 5.3979 0.7538 1.8390 36 1 6.2847 4.6480 1.2160 37 1 5.4083 3.9573 2.6499 38 1 6.6049 4.1797 4.5694 39 1 8.3210 3.7440 4.7528 40 1 8.1639 6.1226 3.2385 41 1 9.3985 7.9837 4.7470 42 1 7.6827 8.4198 4.5625 43 1 8.8360 11.4078 9.5086 44 1 6.7919 1.8139 3.5273 45 1 8.2484 1.6057 2.4613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488713576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:57 Heat of formation + Delta-G solvation = 81.917869 kcal Electronic energy + Delta-G solvation = -24943.407156 eV Core-core repulsion = 21125.095218 eV Total energy + Delta-G solvation = -3818.311938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.66099 -39.90918 -38.73281 -35.97135 -34.77313 -33.77797 -32.41177 -31.43005 -29.76047 -28.53598 -27.23104 -26.10690 -25.57767 -25.28476 -22.52081 -21.87919 -21.52500 -20.47436 -19.57981 -17.81293 -17.68279 -17.09049 -16.53519 -16.20911 -16.01575 -15.52447 -15.29909 -15.18884 -14.92263 -14.79093 -14.14205 -13.92640 -13.84657 -13.74391 -13.26955 -13.23263 -13.00124 -12.65876 -12.56649 -12.43626 -12.00296 -11.90227 -11.62853 -11.30025 -11.10329 -11.05846 -11.00103 -10.87425 -10.70464 -10.57234 -10.46827 -9.78420 -9.67538 -9.32969 -9.06175 -8.83934 -8.77421 -8.20358 -6.47634 -6.20175 -3.90349 1.15257 1.89613 2.05832 3.08039 3.16410 3.22504 3.29565 3.34667 3.71617 3.77911 3.97440 4.08136 4.21927 4.22301 4.37903 4.40307 4.46051 4.56302 4.59298 4.65427 4.68561 4.96080 5.01709 5.12626 5.15002 5.18620 5.24801 5.42978 5.48578 5.54401 5.62213 5.66792 5.70477 5.72046 5.91542 5.93283 5.99130 6.08698 6.14250 6.17460 6.67060 6.72655 6.95026 7.61461 7.78543 8.07491 8.37076 8.68301 9.25256 10.87324 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.001440 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.538810 B =19433.351539 C =19941.107562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.296 5.296 3 C -0.029 4.029 4 C -0.020 4.020 5 C 0.146 3.854 6 N -0.673 5.673 7 C 0.058 3.942 8 H 0.076 0.924 9 C -0.119 4.119 10 C -0.123 4.123 11 H 0.096 0.904 12 C 0.134 3.866 13 N -0.737 5.737 14 C 0.530 3.470 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.062 6.062 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.132 4.132 27 N -0.265 5.265 28 N -0.088 5.088 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.192 0.808 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.347 0.653 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.093 0.907 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.152 -20.120 -23.186 33.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.089 5.089 3 C -0.181 4.181 4 C -0.159 4.159 5 C 0.015 3.985 6 N -0.305 5.305 7 C -0.051 4.051 8 H 0.093 0.907 9 C -0.157 4.157 10 C -0.142 4.142 11 H 0.114 0.886 12 C 0.010 3.990 13 N -0.392 5.392 14 C 0.316 3.684 15 O -0.394 6.394 16 C -0.304 4.304 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.171 4.171 27 N -0.133 5.133 28 N -0.067 5.067 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.209 0.791 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.167 0.833 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.111 0.889 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.008 -21.991 -21.088 33.534 hybrid contribution 1.014 2.510 -2.230 3.508 sum -12.994 -19.480 -23.318 33.046 Atomic orbital electron populations 1.22295 0.72576 1.06158 1.05041 1.47264 1.09513 1.04980 1.47162 1.23429 0.90817 0.94754 1.09095 1.21862 0.95357 0.91196 1.07465 1.20129 0.90457 0.97231 0.90653 1.60657 1.31943 1.22122 1.15789 1.23031 0.89427 0.95262 0.97422 0.90658 1.23175 0.97238 0.95661 0.99657 1.22631 0.98953 0.96320 0.96294 0.88628 1.21243 1.01009 0.81292 0.95497 1.45989 1.72863 1.10736 1.09582 1.20298 0.76359 0.88267 0.83473 1.90700 1.47447 1.71983 1.29247 1.23527 1.04180 0.94391 1.08277 1.85408 1.90539 1.08366 0.99189 1.22916 1.53992 0.95201 0.96185 0.90887 1.24993 0.94882 0.99292 0.94437 1.70033 1.46089 1.35232 0.98948 0.86117 0.78252 0.82639 0.78485 1.19631 1.20584 1.20584 1.23195 0.99670 0.95836 0.98352 1.75048 1.09672 1.12118 1.16437 1.78316 0.96360 1.12127 1.19943 0.89024 0.87954 0.88095 0.79102 0.93247 0.89183 0.83348 0.91618 0.88892 0.91441 0.91715 0.76919 0.89289 0.89277 0.92258 0.88899 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.13 11.39 59.85 0.68 0.81 16 2 N -0.30 -1.97 3.74 -68.06 -0.25 -2.22 16 3 C -0.03 -0.18 11.55 -17.05 -0.20 -0.38 16 4 C -0.02 -0.17 6.76 -82.78 -0.56 -0.73 16 5 C 0.15 0.97 6.09 -4.98 -0.03 0.94 16 6 N -0.67 -4.88 6.55 -107.14 -0.70 -5.58 16 7 C 0.06 0.38 4.14 -66.91 -0.28 0.11 16 8 H 0.08 0.45 7.87 -51.93 -0.41 0.04 16 9 C -0.12 -0.89 7.43 -25.92 -0.19 -1.08 16 10 C -0.12 -0.96 3.76 -89.80 -0.34 -1.29 16 11 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 12 C 0.13 1.54 5.51 -4.04 -0.02 1.52 16 13 N -0.74 -9.79 5.56 -60.30 -0.33 -10.12 16 14 C 0.53 10.00 7.85 -10.99 -0.09 9.92 16 15 O -0.52 -12.03 15.86 5.56 0.09 -11.94 16 16 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 18 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 22 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C -0.13 -0.93 7.21 -25.92 -0.19 -1.11 16 27 N -0.27 -2.93 12.41 33.29 0.41 -2.52 16 28 N -0.09 -0.90 13.17 60.35 0.79 -0.11 16 29 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.10 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.10 -0.05 8.14 -51.93 -0.42 -0.48 16 32 H 0.19 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.05 0.33 8.13 -51.93 -0.42 -0.09 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.35 2.72 8.54 -39.29 -0.34 2.38 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.84 7.90 -51.93 -0.41 0.43 16 38 H 0.07 0.86 7.84 -51.93 -0.41 0.46 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.40 4.06 8.47 -40.82 -0.35 3.72 16 41 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.09 0.72 8.10 -51.93 -0.42 0.29 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -38.15 397.21 -8.24 -46.39 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.94 Total: 0.33 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.79 Total: -7.20 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.65 Total: -46.08 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.15 -8.24 -46.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488713576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.311 kcal (2) G-P(sol) polarization free energy of solvation -38.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds