Wall clock time and date at job start Tue Mar 31 2020 22:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35315 * 125.87191 * 2 1 4 4 C 1.35344 * 106.17731 * 179.73450 * 3 2 1 5 5 C 1.50700 * 126.75152 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47204 * 95.00226 * 5 4 3 7 7 C 1.46896 * 111.00388 * 179.97438 * 6 5 4 8 8 H 1.08998 * 112.84836 * 336.19780 * 7 6 5 9 9 C 1.53780 * 113.61283 * 107.49948 * 7 6 5 10 10 C 1.53783 * 87.08218 * 139.98710 * 9 7 6 11 11 H 1.09000 * 113.69215 * 89.12402 * 10 9 7 12 12 C 1.53002 * 113.61662 * 220.02174 * 10 9 7 13 13 N 1.46494 * 109.47126 * 272.49419 * 12 10 9 14 14 C 1.34775 * 120.00373 * 179.97438 * 13 12 10 15 15 O 1.21279 * 119.99479 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00189 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.46965 * 180.02562 * 16 14 13 18 18 C 1.76207 * 99.99758 * 179.97438 * 17 16 14 19 19 H 1.07991 * 120.00318 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99670 * 179.97438 * 18 17 16 21 21 N 1.31636 * 120.00354 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00145 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46869 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47421 * 120.00189 * 22 20 18 25 25 H 1.48494 * 109.47213 * 240.00578 * 22 20 18 26 26 C 1.53775 * 113.61969 * 204.99789 * 7 6 5 27 27 N 1.33776 * 106.49718 * 359.97438 * 4 3 2 28 28 N 1.28633 * 108.88517 * 359.97438 * 27 4 3 29 29 H 1.08995 * 109.46919 * 89.99924 * 1 2 3 30 30 H 1.08994 * 109.47112 * 210.00563 * 1 2 3 31 31 H 1.08996 * 109.46711 * 330.00521 * 1 2 3 32 32 H 1.07998 * 126.90946 * 359.75328 * 3 2 1 33 33 H 1.09006 * 109.47160 * 215.00110 * 5 4 3 34 34 H 1.08999 * 109.46999 * 334.99845 * 5 4 3 35 35 H 1.00903 * 111.00353 * 56.04445 * 6 5 4 36 36 H 1.09002 * 113.61819 * 254.53249 * 9 7 6 37 37 H 1.09002 * 113.61540 * 25.43817 * 9 7 6 38 38 H 1.09001 * 109.46633 * 32.49103 * 12 10 9 39 39 H 1.08994 * 109.47081 * 152.48960 * 12 10 9 40 40 H 0.96998 * 119.99708 * 359.97438 * 13 12 10 41 41 H 1.09001 * 109.47247 * 299.99686 * 16 14 13 42 42 H 1.08994 * 109.47044 * 60.00316 * 16 14 13 43 43 H 0.96998 * 119.99858 * 179.97438 * 21 20 18 44 44 H 1.09002 * 113.61372 * 334.56899 * 26 7 6 45 45 H 1.09004 * 113.61448 * 105.46421 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5322 0.6404 0.0060 5 6 4.7881 1.4733 0.0090 6 7 5.2575 1.6465 1.3901 7 6 6.4833 2.4549 1.4321 8 1 7.0396 2.4292 0.4951 9 6 6.2667 3.8741 1.9833 10 6 7.6056 3.7070 2.7212 11 1 8.4698 4.0248 2.1378 12 6 7.6006 4.2839 4.1383 13 7 7.9658 5.7017 4.0897 14 6 8.0264 6.4215 5.2275 15 8 7.7791 5.8951 6.2918 16 6 8.4025 7.8799 5.1775 17 16 8.3965 8.5623 6.8540 18 6 8.8577 10.2274 6.5081 19 1 9.0450 10.5356 5.4902 20 6 8.9793 11.1432 7.5439 21 7 8.7506 10.7678 8.7847 22 14 9.4675 12.9086 7.1774 23 1 9.6672 13.0735 5.7151 24 1 8.3934 13.8250 7.6373 25 1 10.7309 13.2306 7.8882 26 6 7.3533 2.1909 2.6724 27 7 3.4576 -0.6953 0.0099 28 7 2.2192 -1.0431 0.0071 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3632 0.8900 0.5137 32 1 1.9382 2.1281 -0.0037 33 1 5.5585 0.9713 -0.5763 34 1 4.5778 2.4493 -0.4284 35 1 5.3979 0.7538 1.8390 36 1 6.2847 4.6480 1.2160 37 1 5.4083 3.9573 2.6499 38 1 6.6049 4.1797 4.5694 39 1 8.3210 3.7440 4.7528 40 1 8.1639 6.1226 3.2385 41 1 9.3985 7.9837 4.7470 42 1 7.6827 8.4198 4.5625 43 1 8.8360 11.4078 9.5086 44 1 6.7919 1.8139 3.5273 45 1 8.2484 1.6057 2.4613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488713576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:56 Heat of formation + Delta-G solvation = 51.987150 kcal Electronic energy + Delta-G solvation = -24944.705049 eV Core-core repulsion = 21125.095218 eV Total energy + Delta-G solvation = -3819.609831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.19604 -40.84989 -39.89294 -36.59496 -35.54200 -34.69214 -34.56395 -32.09165 -31.14451 -28.88242 -28.20589 -27.58006 -26.69553 -26.07912 -23.01682 -22.60240 -22.04744 -21.81361 -20.35572 -19.73501 -18.09923 -17.77933 -17.57765 -17.41603 -16.86805 -16.71838 -16.43241 -16.35491 -15.91192 -15.71022 -15.50080 -14.94286 -14.68489 -14.42579 -14.29215 -14.06226 -13.89243 -13.54837 -13.44927 -13.26214 -13.14302 -13.02575 -12.89703 -12.59775 -12.51010 -12.41825 -11.88343 -11.73581 -11.71776 -11.49570 -11.15199 -11.14237 -11.00502 -10.85812 -10.24948 -10.22393 -10.04637 -9.34436 -8.65156 -8.33268 -6.11361 0.65766 1.29275 1.42840 1.44987 1.49398 1.59232 1.60336 1.65529 2.28045 2.35310 3.01022 3.25025 3.34200 3.46971 3.64359 3.75031 3.77936 3.91946 4.00040 4.07750 4.12140 4.20287 4.33058 4.33573 4.35544 4.50081 4.53855 4.56044 4.64171 4.66209 4.78569 4.90752 4.93228 4.99655 5.02643 5.16388 5.18941 5.32712 5.43671 5.44513 5.58019 5.68930 6.18099 6.21682 6.36620 6.57333 7.08156 7.30244 7.49815 8.76283 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.001440 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.538810 B =19433.351539 C =19941.107562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.290 5.290 3 C -0.021 4.021 4 C -0.039 4.039 5 C 0.151 3.849 6 N -0.680 5.680 7 C 0.067 3.933 8 H 0.091 0.909 9 C -0.116 4.116 10 C -0.112 4.112 11 H 0.116 0.884 12 C 0.134 3.866 13 N -0.709 5.709 14 C 0.530 3.470 15 O -0.571 6.571 16 C -0.128 4.128 17 S -0.156 6.156 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.275 1.275 26 C -0.131 4.131 27 N -0.306 5.306 28 N -0.127 5.127 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.227 0.773 33 H 0.046 0.954 34 H 0.108 0.892 35 H 0.341 0.659 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.417 0.583 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.081 0.919 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.318 -18.662 -26.159 34.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.084 5.084 3 C -0.174 4.174 4 C -0.178 4.178 5 C 0.020 3.980 6 N -0.311 5.311 7 C -0.043 4.043 8 H 0.109 0.891 9 C -0.155 4.155 10 C -0.131 4.131 11 H 0.134 0.866 12 C 0.010 3.990 13 N -0.362 5.362 14 C 0.316 3.684 15 O -0.449 6.449 16 C -0.280 4.280 17 S 0.071 5.929 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.170 4.170 27 N -0.172 5.172 28 N -0.106 5.106 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.146 0.854 32 H 0.244 0.756 33 H 0.064 0.936 34 H 0.126 0.874 35 H 0.160 0.840 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.254 0.746 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.190 -20.573 -24.132 34.741 hybrid contribution 0.976 1.968 -1.375 2.592 sum -13.214 -18.604 -25.508 34.225 Atomic orbital electron populations 1.22723 0.69967 1.07637 1.06695 1.47664 1.11005 1.04382 1.45312 1.24001 0.90148 0.96012 1.07200 1.22263 0.96911 0.90632 1.08010 1.20173 0.89816 0.97771 0.90196 1.60660 1.32317 1.21864 1.16268 1.22985 0.89155 0.94452 0.97668 0.89133 1.23123 0.96087 0.96684 0.99559 1.22607 1.00122 0.96587 0.93832 0.86616 1.21364 0.99731 0.79896 0.98027 1.45739 1.70554 1.11171 1.08783 1.20109 0.76233 0.87921 0.84122 1.90690 1.50142 1.72688 1.31421 1.23370 1.06149 0.95194 1.03252 1.85614 1.90949 1.09883 1.06417 1.23248 1.53951 0.95251 0.96836 0.89810 1.26138 0.94507 1.04496 0.94041 1.70198 1.47330 1.37112 1.00241 0.84890 0.77897 0.75967 0.79091 1.17927 1.19951 1.20004 1.23182 1.00144 0.95285 0.98366 1.74975 1.10496 1.13871 1.17863 1.78225 0.96673 1.13714 1.22033 0.87235 0.87786 0.85392 0.75625 0.93571 0.87356 0.84002 0.90216 0.90640 0.92910 0.92863 0.74591 0.87147 0.87118 0.92026 0.90049 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.10 11.39 127.77 1.46 1.56 16 2 N -0.29 -3.54 3.74 -369.25 -1.38 -4.92 16 3 C -0.02 -0.23 11.55 83.49 0.96 0.74 16 4 C -0.04 -0.61 6.76 41.59 0.28 -0.33 16 5 C 0.15 1.77 6.09 85.56 0.52 2.29 16 6 N -0.68 -8.95 6.55 -492.87 -3.23 -12.17 16 7 C 0.07 0.73 4.14 45.44 0.19 0.92 16 8 H 0.09 0.77 7.87 -2.39 -0.02 0.75 16 9 C -0.12 -1.43 7.43 31.12 0.23 -1.20 16 10 C -0.11 -1.48 3.76 -10.27 -0.04 -1.52 16 11 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 12 C 0.13 2.94 5.51 86.38 0.48 3.41 16 13 N -0.71 -17.44 5.56 -463.08 -2.57 -20.01 16 14 C 0.53 19.67 7.85 87.66 0.69 20.36 16 15 O -0.57 -27.04 15.86 -3.03 -0.05 -27.08 16 16 C -0.13 -5.06 6.16 71.23 0.44 -4.62 16 17 S -0.16 -8.71 20.57 -56.49 -1.16 -9.87 16 18 C -0.55 -31.13 9.50 67.95 0.65 -30.48 16 19 H 0.08 4.43 7.80 -2.92 -0.02 4.40 16 20 C 0.01 0.73 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.23 13.22 21.65 0.29 -55.94 16 22 Si 1.00 43.47 29.55 68.60 2.03 45.49 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C -0.13 -1.62 7.21 31.12 0.22 -1.40 16 27 N -0.31 -6.89 12.41 -48.60 -0.60 -7.49 16 28 N -0.13 -2.65 13.17 37.02 0.49 -2.16 16 29 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H 0.23 0.55 8.06 -2.91 -0.02 0.53 16 33 H 0.05 0.56 8.13 -2.38 -0.02 0.54 16 34 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.34 5.22 8.54 -89.69 -0.77 4.46 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 1.24 7.90 -2.39 -0.02 1.22 16 38 H 0.05 1.35 7.84 -2.39 -0.02 1.33 16 39 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.42 7.10 8.47 -92.71 -0.79 6.32 16 41 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 42 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 43 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -87.07 397.21 -0.19 -87.26 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -0.54 Total: 16.00 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 6.54 Total: -9.10 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -7.01 Total: -102.70 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -87.07 -0.19 -87.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488713576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.248 kcal (2) G-P(sol) polarization free energy of solvation -87.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds