Wall clock time and date at job start Tue Mar 31 2020 22:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40448 * 126.82720 * 2 1 4 4 C 1.30704 * 106.79625 * 180.26275 * 3 2 1 5 5 N 1.33240 * 108.94682 * 359.74690 * 4 3 2 6 6 C 1.30828 * 109.82961 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.96310 * 179.97438 * 6 5 4 8 8 N 1.46907 * 109.47045 * 83.37261 * 7 6 5 9 9 C 1.47841 * 110.99843 * 52.70838 * 8 7 6 10 10 C 1.54905 * 104.79797 * 146.36308 * 9 8 7 11 11 C 1.55150 * 101.65025 * 322.93078 * 10 9 8 12 12 C 1.47442 * 110.99764 * 173.55170 * 8 7 6 13 13 H 1.08994 * 109.88904 * 117.17850 * 12 8 7 14 14 C 1.53001 * 109.89167 * 356.14513 * 12 8 7 15 15 N 1.46499 * 109.46924 * 64.35565 * 14 12 8 16 16 C 1.34778 * 120.00482 * 185.79137 * 15 14 12 17 17 O 1.21285 * 119.99240 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00520 * 179.97438 * 16 15 14 19 19 S 1.80992 * 109.47090 * 180.02562 * 18 16 15 20 20 C 1.76208 * 99.99805 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00133 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99711 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00231 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99739 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46912 * 89.99773 * 24 22 20 26 26 H 1.48500 * 109.47197 * 210.00088 * 24 22 20 27 27 H 1.48507 * 109.47112 * 329.99989 * 24 22 20 28 28 H 1.09001 * 109.46789 * 275.27156 * 1 2 3 29 29 H 1.08990 * 109.47270 * 35.27351 * 1 2 3 30 30 H 1.09003 * 109.46837 * 155.27855 * 1 2 3 31 31 H 1.07998 * 125.52743 * 179.79381 * 4 3 2 32 32 H 1.09002 * 109.47310 * 323.37602 * 7 6 5 33 33 H 1.08995 * 109.47555 * 203.37154 * 7 6 5 34 34 H 1.09002 * 110.37561 * 265.19429 * 9 8 7 35 35 H 1.09003 * 110.37813 * 27.42512 * 9 8 7 36 36 H 1.09005 * 110.99229 * 81.01749 * 10 9 8 37 37 H 1.09002 * 110.99671 * 204.84156 * 10 9 8 38 38 H 1.09002 * 110.70033 * 277.26486 * 11 10 9 39 39 H 1.08998 * 110.70494 * 154.03631 * 11 10 9 40 40 H 1.08993 * 109.47406 * 304.35764 * 14 12 8 41 41 H 1.08998 * 109.47023 * 184.35256 * 14 12 8 42 42 H 0.97008 * 120.00013 * 5.78998 * 15 14 12 43 43 H 1.09004 * 109.46910 * 59.99835 * 18 16 15 44 44 H 1.09002 * 109.47315 * 300.00509 * 18 16 15 45 45 H 0.97001 * 120.00083 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1242 0.0000 4 6 3.5348 0.6765 -0.0057 5 7 3.5096 -0.6556 -0.0037 6 6 2.2707 -1.0761 0.0027 7 6 1.8247 -2.5155 0.0063 8 7 1.8391 -3.0292 1.3826 9 6 1.0686 -2.1477 2.2852 10 6 0.4389 -3.1034 3.3291 11 6 0.0974 -4.3397 2.4561 12 6 1.2636 -4.3852 1.4465 13 1 2.0205 -5.0938 1.7824 14 6 0.7425 -4.7950 0.0676 15 7 1.8635 -4.8846 -0.8713 16 6 1.6311 -5.1172 -2.1783 17 8 0.4937 -5.2519 -2.5773 18 6 2.7842 -5.2087 -3.1442 19 16 2.1520 -5.5248 -4.8103 20 6 3.6679 -5.5836 -5.7067 21 1 4.6060 -5.4409 -5.1911 22 6 3.6562 -5.8124 -7.0757 23 7 2.5127 -5.9849 -7.7044 24 14 5.2632 -5.8740 -8.0261 25 1 5.7719 -7.2689 -8.0482 26 1 5.0336 -5.4087 -9.4175 27 1 6.2616 -4.9934 -7.3680 28 1 -0.3633 0.0944 1.0233 29 1 -0.3633 0.8389 -0.5934 30 1 -0.3633 -0.9335 -0.4298 31 1 4.4254 1.2873 -0.0105 32 1 2.5019 -3.1074 -0.6095 33 1 0.8141 -2.5839 -0.3963 34 1 1.7309 -1.4339 2.7751 35 1 0.2905 -1.6232 1.7305 36 1 1.1581 -3.3611 4.1065 37 1 -0.4628 -2.6698 3.7617 38 1 -0.8528 -4.1972 1.9413 39 1 0.0766 -5.2455 3.0620 40 1 0.0298 -4.0507 -0.2875 41 1 0.2499 -5.7648 0.1388 42 1 2.7732 -4.7764 -0.5522 43 1 3.4448 -6.0226 -2.8452 44 1 3.3386 -4.2702 -3.1382 45 1 2.5045 -6.1451 -8.6611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493079860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:41 Heat of formation + Delta-G solvation = 60.346541 kcal Electronic energy + Delta-G solvation = -27624.483276 eV Core-core repulsion = 23805.235935 eV Total energy + Delta-G solvation = -3819.247341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.24261 -41.38781 -39.87391 -35.81813 -35.22324 -34.58456 -34.08887 -32.04287 -31.48457 -29.99738 -28.51303 -27.67900 -26.98888 -25.82448 -23.10935 -22.73665 -21.95798 -21.39896 -20.65704 -19.72597 -18.48074 -17.96270 -17.48848 -17.29726 -16.99728 -16.87669 -16.48841 -16.26488 -15.82778 -15.71056 -15.43876 -14.83088 -14.72559 -14.50861 -14.31093 -14.24284 -14.04118 -13.68451 -13.59422 -13.25958 -13.16326 -12.96913 -12.87999 -12.67927 -12.59623 -12.49742 -12.25740 -12.04904 -11.72625 -11.60132 -11.14280 -11.07857 -10.96404 -10.79175 -10.65026 -10.28513 -10.01111 -9.42055 -8.65604 -8.35140 -6.12207 0.48831 1.26627 1.29467 1.41852 1.46276 1.57249 1.58931 1.86327 2.23006 2.28380 2.82307 2.99180 3.02665 3.30894 3.47400 3.49245 3.66126 3.74742 3.83137 3.95335 4.01878 4.09742 4.18411 4.24954 4.31139 4.38784 4.48850 4.50648 4.54623 4.56950 4.58923 4.67358 4.85504 5.00815 5.01963 5.16192 5.23960 5.33691 5.35504 5.41503 5.42336 5.68798 5.79021 5.86098 6.19844 6.40488 7.05590 7.06824 7.18667 8.73903 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.003003 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.327974 B = 9320.486125 C =10701.953118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.379 5.379 3 N -0.344 5.344 4 C 0.191 3.809 5 N -0.556 5.556 6 C 0.277 3.723 7 C 0.117 3.883 8 N -0.515 5.515 9 C 0.033 3.967 10 C -0.118 4.118 11 C -0.128 4.128 12 C 0.070 3.930 13 H 0.112 0.888 14 C 0.100 3.900 15 N -0.714 5.714 16 C 0.536 3.464 17 O -0.559 6.559 18 C -0.134 4.134 19 S -0.144 6.144 20 C -0.548 4.548 21 H 0.080 0.920 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.995 3.005 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.260 1.260 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.244 0.756 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.417 0.583 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.885 8.456 26.052 27.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.170 5.170 3 N -0.173 5.173 4 C -0.111 4.111 5 N -0.284 5.284 6 C 0.000 4.000 7 C -0.013 4.013 8 N -0.240 5.240 9 C -0.095 4.095 10 C -0.156 4.156 11 C -0.167 4.167 12 C -0.038 4.038 13 H 0.130 0.870 14 C -0.024 4.024 15 N -0.370 5.370 16 C 0.322 3.678 17 O -0.437 6.437 18 C -0.285 4.285 19 S 0.083 5.917 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.184 1.184 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.260 0.740 32 H 0.135 0.865 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.257 0.743 43 H 0.128 0.872 44 H 0.121 0.879 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.350 8.757 25.406 27.400 hybrid contribution 1.533 0.268 -0.803 1.751 sum -3.817 9.024 24.603 26.482 Atomic orbital electron populations 1.22341 0.72253 1.05900 1.05414 1.50489 1.08933 1.03536 1.54089 1.77964 1.02697 1.09065 1.27562 1.26587 0.96553 0.90470 0.97515 1.70471 1.20540 1.12102 1.25305 1.24486 0.86409 0.92926 0.96168 1.21359 1.01675 0.84988 0.93260 1.63902 1.52856 1.02439 1.04843 1.23221 0.95595 0.96063 0.94574 1.22658 1.01374 0.94532 0.97024 1.22804 0.97064 1.00192 0.96653 1.22861 0.97667 0.90202 0.93080 0.87025 1.21977 0.89165 1.02760 0.88472 1.46223 1.11544 1.72966 1.06302 1.19942 0.89265 0.75341 0.83209 1.90697 1.24485 1.50017 1.78457 1.23401 1.00505 1.06386 0.98201 1.85451 1.13850 1.94003 0.98396 1.23211 0.93324 1.56872 0.96142 0.90139 1.26079 1.01369 0.93796 0.97718 1.70168 1.27636 1.46584 1.10273 0.84999 0.77162 0.79067 0.77063 1.19161 1.20286 1.18429 0.87923 0.88175 0.88020 0.74028 0.86540 0.91447 0.92143 0.93011 0.90145 0.88920 0.90217 0.88240 0.91446 0.90154 0.74323 0.87231 0.87862 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 9.84 127.77 1.26 2.36 16 2 N -0.38 -8.35 3.97 -359.89 -1.43 -9.78 16 3 N -0.34 -8.69 12.70 -61.25 -0.78 -9.47 16 4 C 0.19 4.60 13.03 180.77 2.36 6.96 16 5 N -0.56 -15.23 11.19 -191.79 -2.15 -17.37 16 6 C 0.28 6.66 6.34 138.23 0.88 7.54 16 7 C 0.12 2.34 3.98 85.56 0.34 2.68 16 8 N -0.51 -8.09 5.28 -865.07 -4.57 -12.66 16 9 C 0.03 0.43 5.67 86.77 0.49 0.92 16 10 C -0.12 -0.96 7.08 31.98 0.23 -0.73 16 11 C -0.13 -1.00 6.47 31.78 0.21 -0.80 16 12 C 0.07 0.84 3.50 45.26 0.16 1.00 16 13 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 14 C 0.10 1.74 4.27 86.38 0.37 2.11 16 15 N -0.71 -15.94 3.26 -463.07 -1.51 -17.45 16 16 C 0.54 18.34 7.85 87.66 0.69 19.03 16 17 O -0.56 -23.90 15.85 -3.05 -0.05 -23.95 16 18 C -0.13 -5.21 6.16 71.23 0.44 -4.77 16 19 S -0.14 -7.91 20.57 -56.49 -1.16 -9.07 16 20 C -0.55 -31.40 9.50 67.96 0.65 -30.75 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 22 C 0.02 0.87 5.49 84.86 0.47 1.34 16 23 N -0.91 -55.82 13.22 21.65 0.29 -55.53 16 24 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 27 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 28 H 0.10 0.91 7.26 -2.39 -0.02 0.90 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 1.15 6.85 -2.39 -0.02 1.14 16 31 H 0.24 3.92 8.06 -2.91 -0.02 3.89 16 32 H 0.12 2.61 5.00 -2.39 -0.01 2.60 16 33 H 0.07 1.30 4.69 -2.39 -0.01 1.28 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 0.62 4.91 -2.39 -0.01 0.61 16 36 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 0.59 7.85 -2.39 -0.02 0.57 16 39 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 1.28 6.31 -2.39 -0.02 1.27 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.42 7.67 7.24 -92.70 -0.67 7.00 16 43 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 44 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 45 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -81.64 373.66 -0.45 -82.10 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.36 Total: 20.31 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 8.52 Total: 6.89 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -10.14 Total: -122.26 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.05 Total: -23.95 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.07 kcal Total: -81.64 -0.45 -82.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493079860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.443 kcal (2) G-P(sol) polarization free energy of solvation -81.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds