Wall clock time and date at job start Tue Mar 31 2020 22:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35314 * 125.86880 * 2 1 4 4 C 1.35353 * 106.16959 * 180.11672 * 3 2 1 5 5 C 1.50702 * 126.74789 * 179.84960 * 4 3 2 6 6 N 1.46906 * 109.47041 * 94.71410 * 5 4 3 7 7 C 1.47845 * 110.99707 * 295.32194 * 6 5 4 8 8 C 1.54910 * 104.89181 * 213.58013 * 7 6 5 9 9 C 1.55435 * 101.52019 * 37.06243 * 8 7 6 10 10 C 1.47436 * 110.99772 * 174.47732 * 6 5 4 11 11 H 1.09003 * 109.88565 * 242.65725 * 10 6 5 12 12 C 1.53003 * 109.89361 * 3.85156 * 10 6 5 13 13 N 1.46500 * 109.46973 * 182.94100 * 12 10 6 14 14 C 1.34774 * 119.99499 * 185.22265 * 13 12 10 15 15 O 1.21284 * 120.00277 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00000 * 180.02562 * 14 13 12 17 17 S 1.80997 * 109.47418 * 180.02562 * 16 14 13 18 18 C 1.76194 * 99.99911 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00282 * 0.02562 * 18 17 16 20 20 C 1.38804 * 119.99852 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99977 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00052 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47203 * 89.99602 * 22 20 18 24 24 H 1.48499 * 109.47229 * 210.00075 * 22 20 18 25 25 H 1.48507 * 109.46615 * 330.00114 * 22 20 18 26 26 N 1.33771 * 106.49965 * 359.59273 * 4 3 2 27 27 N 1.28637 * 108.88599 * 0.26027 * 26 4 3 28 28 H 1.09003 * 109.47200 * 270.32654 * 1 2 3 29 29 H 1.09006 * 109.46965 * 30.32538 * 1 2 3 30 30 H 1.08995 * 109.47510 * 150.32767 * 1 2 3 31 31 H 1.07997 * 126.91384 * 359.97116 * 3 2 1 32 32 H 1.08999 * 109.47553 * 334.71831 * 5 4 3 33 33 H 1.08994 * 109.47541 * 214.71501 * 5 4 3 34 34 H 1.08999 * 110.37636 * 332.46043 * 7 6 5 35 35 H 1.09000 * 110.37806 * 94.69397 * 7 6 5 36 36 H 1.08994 * 110.99512 * 155.21692 * 8 7 6 37 37 H 1.09001 * 110.99172 * 279.03715 * 8 7 6 38 38 H 1.09003 * 110.69423 * 205.97353 * 9 8 7 39 39 H 1.09002 * 110.68939 * 82.76038 * 9 8 7 40 40 H 1.08999 * 109.46580 * 302.93967 * 12 10 6 41 41 H 1.08996 * 109.46718 * 62.94417 * 12 10 6 42 42 H 0.96993 * 120.00128 * 5.22639 * 13 12 10 43 43 H 1.08996 * 109.46969 * 300.00673 * 16 14 13 44 44 H 1.09009 * 109.46756 * 60.00048 * 16 14 13 45 45 H 0.97001 * 119.99935 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6403 -0.0026 5 6 4.7881 1.4732 -0.0069 6 7 5.2625 1.6508 1.3720 7 6 4.2922 2.4303 2.1699 8 6 5.1577 3.2503 3.1590 9 6 6.3855 3.6069 2.2751 10 6 6.5607 2.3492 1.3983 11 1 7.3225 1.6998 1.8296 12 6 6.9618 2.7560 -0.0211 13 7 8.2841 3.3861 0.0068 14 6 8.7990 3.9219 -1.1176 15 8 8.1675 3.8828 -2.1524 16 6 10.1594 4.5696 -1.0892 17 16 10.5672 5.1895 -2.7401 18 6 12.1597 5.8745 -2.4250 19 1 12.5830 5.8229 -1.4327 20 6 12.8701 6.4804 -3.4520 21 7 14.0595 6.9926 -3.2165 22 14 12.1382 6.5689 -5.1684 23 1 11.3525 7.8213 -5.3075 24 1 13.2311 6.5559 -6.1738 25 1 11.2492 5.3998 -5.3883 26 7 3.4575 -0.6953 0.0050 27 7 2.2191 -1.0431 0.0064 28 1 -0.3634 0.0059 1.0277 29 1 -0.3633 0.8871 -0.5189 30 1 -0.3634 -0.8928 -0.5087 31 1 1.9382 2.1281 -0.0004 32 1 4.5762 2.4479 -0.4465 33 1 5.5563 0.9694 -0.5934 34 1 3.7189 3.0964 1.5252 35 1 3.6244 1.7622 2.7138 36 1 4.6338 4.1490 3.4841 37 1 5.4552 2.6429 4.0139 38 1 7.2689 3.7730 2.8918 39 1 6.1752 4.4806 1.6582 40 1 6.9942 1.8713 -0.6570 41 1 6.2314 3.4616 -0.4169 42 1 8.7889 3.4177 0.8343 43 1 10.1523 5.3987 -0.3817 44 1 10.9047 3.8360 -0.7818 45 1 14.5562 7.4157 -3.9343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493080734.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:03 Heat of formation + Delta-G solvation = 48.013003 kcal Electronic energy + Delta-G solvation = -26358.617454 eV Core-core repulsion = 22538.835290 eV Total energy + Delta-G solvation = -3819.782163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.22156 -41.12274 -39.98057 -35.92079 -35.57338 -34.65988 -33.98198 -32.13239 -31.28944 -29.86687 -28.81627 -27.84981 -26.89453 -25.86363 -23.04852 -22.89917 -21.92488 -21.66054 -20.75012 -19.80126 -18.22926 -17.98428 -17.55872 -17.48791 -17.09582 -16.86804 -16.51662 -16.32335 -15.97350 -15.58708 -15.27026 -15.06272 -14.91379 -14.72632 -14.41339 -14.08482 -13.85650 -13.69160 -13.53625 -13.34609 -13.27108 -13.00129 -12.82398 -12.64405 -12.59368 -12.36623 -12.03086 -11.93033 -11.85418 -11.73386 -11.57268 -11.16066 -11.04738 -10.99423 -10.52092 -10.26505 -10.11151 -9.30476 -8.98091 -8.50482 -6.20966 0.63391 1.00100 1.31820 1.43304 1.48060 1.56908 1.57802 1.58447 2.20676 2.26568 2.72383 2.87763 3.05433 3.31160 3.53771 3.71095 3.77794 3.79542 3.91887 4.05031 4.10821 4.20998 4.26448 4.29050 4.33735 4.42414 4.44795 4.49687 4.61564 4.63530 4.64145 4.75528 4.91851 4.94531 5.02007 5.08402 5.14054 5.18746 5.32525 5.41684 5.68249 5.71868 5.95540 5.98983 6.12781 6.46699 6.94824 7.19856 7.52077 8.61787 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.019710 B = 0.002042 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.266238 B =13706.796512 C =14679.257383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.287 5.287 3 C -0.030 4.030 4 C -0.028 4.028 5 C 0.130 3.870 6 N -0.523 5.523 7 C 0.043 3.957 8 C -0.122 4.122 9 C -0.137 4.137 10 C 0.073 3.927 11 H 0.098 0.902 12 C 0.107 3.893 13 N -0.707 5.707 14 C 0.536 3.464 15 O -0.563 6.563 16 C -0.111 4.111 17 S -0.177 6.177 18 C -0.528 4.528 19 H 0.063 0.937 20 C 0.045 3.955 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.261 1.261 24 H -0.260 1.260 25 H -0.237 1.237 26 N -0.298 5.298 27 N -0.125 5.125 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.227 0.773 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.417 0.583 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.519 -9.145 14.890 35.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.080 5.080 3 C -0.183 4.183 4 C -0.168 4.168 5 C 0.001 3.999 6 N -0.248 5.248 7 C -0.084 4.084 8 C -0.160 4.160 9 C -0.175 4.175 10 C -0.036 4.036 11 H 0.116 0.884 12 C -0.018 4.018 13 N -0.361 5.361 14 C 0.322 3.678 15 O -0.441 6.441 16 C -0.262 4.262 17 S 0.050 5.950 18 C -0.676 4.676 19 H 0.081 0.919 20 C -0.160 4.160 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.186 1.186 24 H -0.185 1.185 25 H -0.161 1.161 26 N -0.164 5.164 27 N -0.105 5.105 28 H 0.127 0.873 29 H 0.148 0.852 30 H 0.123 0.877 31 H 0.244 0.756 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.254 0.746 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -31.398 -11.220 13.355 35.918 hybrid contribution 1.124 1.980 0.368 2.306 sum -30.274 -9.240 13.723 34.500 Atomic orbital electron populations 1.22746 0.69819 1.07737 1.06730 1.47661 1.10998 1.04202 1.45181 1.23924 0.89936 0.96045 1.08350 1.22020 0.96042 0.90935 1.07841 1.20520 0.91710 0.96922 0.90784 1.63750 1.02582 1.47489 1.10931 1.23112 0.94755 0.95068 0.95482 1.22723 0.95520 1.00192 0.97591 1.22960 1.00164 0.96301 0.98073 1.22626 0.92597 0.95371 0.92985 0.88373 1.22080 0.84011 0.97346 0.98352 1.45602 1.19817 1.59031 1.11645 1.19939 0.86628 0.77642 0.83637 1.90693 1.62061 1.58871 1.32506 1.23269 0.97439 1.04318 1.01171 1.84717 1.21625 1.75255 1.13441 1.22466 1.02509 1.42877 0.99730 0.91880 1.25565 0.94478 0.93308 1.02689 1.70016 1.12786 1.37568 1.35086 0.85870 0.79657 0.81144 0.79722 1.18605 1.18466 1.16133 1.75017 1.10251 1.13885 1.17203 1.78254 0.96631 1.13699 1.21877 0.87284 0.85178 0.87693 0.75622 0.90969 0.89944 0.92144 0.91132 0.89143 0.90581 0.89007 0.91137 0.91989 0.91545 0.74551 0.86594 0.86866 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.13 11.39 127.77 1.46 1.59 16 2 N -0.29 -3.91 3.74 -369.23 -1.38 -5.29 16 3 C -0.03 -0.37 11.26 83.49 0.94 0.57 16 4 C -0.03 -0.57 6.17 41.60 0.26 -0.31 16 5 C 0.13 2.37 4.24 85.56 0.36 2.73 16 6 N -0.52 -8.71 5.19 -865.06 -4.49 -13.20 16 7 C 0.04 0.52 5.79 86.77 0.50 1.02 16 8 C -0.12 -1.19 7.10 32.08 0.23 -0.97 16 9 C -0.14 -1.55 6.13 31.88 0.20 -1.35 16 10 C 0.07 1.09 3.50 45.26 0.16 1.25 16 11 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 12 C 0.11 2.14 3.75 86.38 0.32 2.46 16 13 N -0.71 -15.66 5.34 -463.06 -2.47 -18.13 16 14 C 0.54 17.78 7.85 87.66 0.69 18.47 16 15 O -0.56 -23.53 15.86 -3.04 -0.05 -23.58 16 16 C -0.11 -4.06 6.16 71.24 0.44 -3.62 16 17 S -0.18 -8.86 18.55 -56.49 -1.05 -9.91 16 18 C -0.53 -30.58 10.04 67.96 0.68 -29.90 16 19 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 20 C 0.04 2.64 5.50 84.86 0.47 3.10 16 21 N -0.92 -55.69 13.97 21.65 0.30 -55.39 16 22 Si 0.91 44.95 27.74 68.60 1.90 46.85 16 23 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 25 H -0.24 -11.69 6.74 99.48 0.67 -11.01 16 26 N -0.30 -8.00 12.41 -48.60 -0.60 -8.60 16 27 N -0.13 -2.92 13.17 37.02 0.49 -2.44 16 28 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.13 -0.54 8.14 -2.38 -0.02 -0.56 16 30 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.23 0.74 8.06 -2.91 -0.02 0.72 16 32 H 0.07 1.10 6.78 -2.39 -0.02 1.09 16 33 H 0.08 1.81 6.28 -2.39 -0.02 1.80 16 34 H 0.06 0.57 7.70 -2.39 -0.02 0.55 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.89 7.80 -2.39 -0.02 0.88 16 40 H 0.06 1.45 6.25 -2.39 -0.01 1.44 16 41 H 0.07 1.42 6.97 -2.39 -0.02 1.40 16 42 H 0.42 6.55 8.36 -92.71 -0.77 5.77 16 43 H 0.12 3.82 8.14 -2.40 -0.02 3.80 16 44 H 0.11 3.82 8.14 -2.39 -0.02 3.81 16 45 H 0.28 15.55 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -84.45 381.72 -0.45 -84.90 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.20 Total: 9.74 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 6.70 Total: -4.97 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -8.15 Total: -103.04 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.90 Total: 46.85 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.91 kcal Total: -84.45 -0.45 -84.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493080734.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.912 kcal (2) G-P(sol) polarization free energy of solvation -84.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds