Wall clock time and date at job start Tue Mar 31 2020 22:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 110.99716 * 2 1 4 4 C 1.52999 * 109.47651 * 66.04393 * 3 2 1 5 5 N 1.46502 * 109.47466 * 179.97438 * 4 3 2 6 6 C 1.34771 * 120.00406 * 179.97438 * 5 4 3 7 7 O 1.21284 * 119.99478 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00321 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.47084 * 180.02562 * 8 6 5 10 10 C 1.76200 * 99.99757 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00123 * 0.02562 * 10 9 8 12 12 C 1.38801 * 119.99727 * 180.27137 * 10 9 8 13 13 N 1.31625 * 120.00325 * 359.72915 * 12 10 9 14 14 Si 1.86797 * 119.99905 * 179.72377 * 12 10 9 15 15 H 1.48502 * 109.47010 * 60.00567 * 14 12 10 16 16 H 1.48497 * 109.47275 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47635 * 300.00249 * 14 12 10 18 18 C 1.46898 * 111.00407 * 236.04187 * 2 1 3 19 19 C 1.52997 * 109.47100 * 199.78863 * 18 2 1 20 20 H 1.09002 * 110.21563 * 302.53642 * 19 18 2 21 21 C 1.54432 * 110.24427 * 180.61402 * 19 18 2 22 22 C 1.54808 * 101.56444 * 266.47423 * 21 19 18 23 23 C 1.51474 * 104.23233 * 335.02696 * 22 21 19 24 24 N 1.31163 * 141.93999 * 196.57549 * 23 22 21 25 25 C 1.33165 * 109.83865 * 179.76325 * 24 23 22 26 26 N 1.30654 * 108.94555 * 0.04154 * 25 24 23 27 27 N 1.34118 * 110.04995 * 16.46771 * 23 22 21 28 28 H 1.09004 * 109.46859 * 54.77664 * 1 2 3 29 29 H 1.09000 * 109.46816 * 174.76766 * 1 2 3 30 30 H 1.08997 * 109.47684 * 294.77741 * 1 2 3 31 31 H 1.09007 * 109.47380 * 306.03672 * 3 2 1 32 32 H 1.09009 * 109.47237 * 186.04394 * 3 2 1 33 33 H 1.08999 * 109.47316 * 59.99912 * 4 3 2 34 34 H 1.09002 * 109.46800 * 299.99596 * 4 3 2 35 35 H 0.97006 * 119.99469 * 0.02562 * 5 4 3 36 36 H 1.08999 * 109.46839 * 60.00462 * 8 6 5 37 37 H 1.09002 * 109.46952 * 300.00344 * 8 6 5 38 38 H 0.96993 * 120.00555 * 179.97438 * 13 12 10 39 39 H 1.09002 * 109.46992 * 319.78734 * 18 2 1 40 40 H 1.08997 * 109.47372 * 79.78598 * 18 2 1 41 41 H 1.09005 * 110.98254 * 24.59184 * 21 19 18 42 42 H 1.08998 * 110.98750 * 148.40111 * 21 19 18 43 43 H 1.08995 * 110.45970 * 216.34567 * 22 21 19 44 44 H 1.08999 * 110.48852 * 93.72544 * 22 21 19 45 45 H 1.07994 * 125.52643 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 7 2.1569 3.4251 1.3184 6 6 1.9556 4.2242 2.3848 7 8 1.3398 3.8110 3.3445 8 6 2.4966 5.6307 2.3852 9 16 2.0659 6.4424 3.9446 10 6 2.8005 8.0220 3.6805 11 1 3.3201 8.2281 2.7564 12 6 2.7158 8.9996 4.6621 13 7 2.0822 8.7485 5.7882 14 14 3.5013 10.6716 4.3853 15 1 2.8961 11.3109 3.1893 16 1 3.2715 11.5297 5.5753 17 1 4.9612 10.5035 4.1714 18 6 1.9956 -0.7660 -1.1375 19 6 3.4455 -1.1653 -0.8561 20 1 4.0501 -0.2786 -0.6656 21 6 4.0222 -1.9592 -2.0485 22 6 3.7417 -3.4185 -1.6145 23 6 3.6694 -3.3501 -0.1030 24 7 3.7114 -4.1058 0.9682 25 6 3.5827 -3.3520 2.0584 26 7 3.4555 -2.1027 1.6977 27 7 3.5073 -2.0788 0.2925 28 1 -0.3633 0.5928 -0.8396 29 1 -0.3633 -1.0234 -0.0937 30 1 -0.3634 0.4307 0.9330 31 1 1.5611 1.9273 -0.8310 32 1 3.0798 1.3444 -0.1082 33 1 2.0657 1.5017 2.1492 34 1 0.5471 2.0846 1.4263 35 1 2.6491 3.7556 0.5506 36 1 2.0634 6.1869 1.5539 37 1 3.5810 5.6029 2.2779 38 1 2.0233 9.4315 6.4743 39 1 1.3931 -1.6630 -1.2815 40 1 1.9557 -0.1532 -2.0379 41 1 3.4943 -1.7166 -2.9709 42 1 5.0923 -1.7818 -2.1547 43 1 4.5554 -4.0724 -1.9281 44 1 2.7935 -3.7636 -2.0265 45 1 3.5830 -3.7146 3.0757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567270612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:04 Heat of formation + Delta-G solvation = 78.774296 kcal Electronic energy + Delta-G solvation = -26217.236671 eV Core-core repulsion = 22398.788418 eV Total energy + Delta-G solvation = -3818.448254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.69934 -39.38327 -38.64801 -36.91933 -34.40399 -32.42485 -32.24757 -30.67435 -30.07516 -29.49728 -28.20997 -26.38290 -25.48549 -24.06066 -22.95989 -21.76183 -21.00972 -20.68411 -20.26525 -17.85116 -17.13654 -16.71537 -16.28127 -16.17465 -15.91020 -15.43725 -15.18172 -14.87140 -14.80129 -14.71885 -14.68940 -14.37622 -13.92237 -13.76154 -13.20771 -13.08986 -12.98154 -12.73922 -12.52888 -12.38538 -12.18232 -11.99396 -11.83069 -11.69055 -11.57289 -11.24845 -11.04218 -11.03651 -10.76822 -10.12571 -9.94419 -9.82250 -9.67211 -9.40761 -9.05990 -8.86965 -8.79718 -8.23064 -6.49370 -6.20845 -3.91593 1.44239 1.86472 2.75964 2.87024 3.11975 3.13725 3.23459 3.26422 3.29181 3.44264 3.73245 3.82243 3.97153 4.13663 4.20885 4.39809 4.46621 4.51664 4.72797 4.76178 4.82301 4.90562 4.92743 5.03638 5.12495 5.12803 5.13956 5.15838 5.17044 5.21054 5.26003 5.55844 5.64695 5.75689 5.89632 5.95548 6.13392 6.22934 6.26709 6.36794 6.46424 6.51711 6.66545 7.59467 7.70031 7.96921 8.35392 8.62861 9.24001 10.86518 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.022068 B = 0.001827 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.482652 B =15325.110082 C =15497.905292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.531 5.531 3 C 0.046 3.954 4 C 0.126 3.874 5 N -0.740 5.740 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.153 4.153 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.046 3.954 19 C 0.155 3.845 20 H 0.103 0.897 21 C -0.126 4.126 22 C -0.046 4.046 23 C 0.238 3.762 24 N -0.536 5.536 25 C 0.189 3.811 26 N -0.268 5.268 27 N -0.372 5.372 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.396 0.604 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.521 -24.239 -22.688 33.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.254 5.254 3 C -0.082 4.082 4 C 0.002 3.998 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.389 6.389 8 C -0.303 4.303 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.083 4.083 19 C 0.052 3.948 20 H 0.121 0.879 21 C -0.166 4.166 22 C -0.086 4.086 23 C -0.039 4.039 24 N -0.265 5.265 25 C -0.114 4.114 26 N -0.095 5.095 27 N -0.163 5.163 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.229 0.771 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.486 -24.656 -19.844 31.684 hybrid contribution 1.142 2.118 -2.354 3.366 sum 2.628 -22.537 -22.198 31.743 Atomic orbital electron populations 1.22471 0.86215 1.01842 1.01883 1.61722 1.08532 1.13153 1.42037 1.22323 1.00539 0.88164 0.97168 1.21144 0.99371 0.82036 0.97283 1.45911 1.59587 1.13685 1.20325 1.20285 0.79283 0.86822 0.81809 1.90714 1.39426 1.75120 1.33602 1.23524 1.03908 0.95007 1.07887 1.85427 1.73204 1.10951 1.13708 1.22825 1.41180 0.98612 1.05849 0.90995 1.24996 0.95191 0.98982 0.94446 1.70003 1.39644 1.34576 1.06018 0.86220 0.79548 0.81863 0.77837 1.19959 1.20803 1.19949 1.22524 0.94153 0.98997 0.92632 1.22065 0.97988 0.93223 0.81538 0.87913 1.22945 1.03396 0.92984 0.97254 1.20832 1.05225 0.97989 0.84510 1.25128 0.97731 0.83898 0.97167 1.70062 1.25842 1.34350 0.96214 1.26144 0.99330 0.86682 0.99221 1.78243 1.24287 1.20968 0.85955 1.51338 1.52124 1.08563 1.04238 0.95194 0.91502 0.90337 0.93940 0.90396 0.90524 0.91701 0.77095 0.89284 0.89241 0.92114 0.89802 0.91932 0.87264 0.88553 0.87674 0.87785 0.76439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.23 60.07 0.55 0.74 16 2 N -0.53 -4.42 4.63 -242.92 -1.12 -5.55 16 3 C 0.05 0.39 4.90 -3.83 -0.02 0.37 16 4 C 0.13 1.57 5.60 -4.04 -0.02 1.55 16 5 N -0.74 -10.04 5.56 -60.29 -0.33 -10.37 16 6 C 0.53 10.19 7.85 -10.99 -0.09 10.10 16 7 O -0.51 -12.14 15.86 5.55 0.09 -12.05 16 8 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 11 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 14 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 C 0.05 0.25 4.57 -3.83 -0.02 0.23 16 19 C 0.16 0.89 3.55 -66.97 -0.24 0.65 16 20 H 0.10 0.62 6.78 -51.93 -0.35 0.27 16 21 C -0.13 -0.24 6.72 -25.03 -0.17 -0.41 16 22 C -0.05 -0.16 6.86 -26.55 -0.18 -0.35 16 23 C 0.24 2.17 8.66 -155.31 -1.34 0.82 16 24 N -0.54 -6.22 11.20 -11.75 -0.13 -6.35 16 25 C 0.19 2.14 13.03 -91.93 -1.20 0.95 16 26 N -0.27 -3.44 12.80 29.26 0.37 -3.06 16 27 N -0.37 -3.64 4.46 -50.63 -0.23 -3.86 16 28 H 0.03 0.20 8.07 -51.93 -0.42 -0.22 16 29 H 0.07 0.49 7.85 -51.93 -0.41 0.08 16 30 H 0.08 0.73 6.73 -51.93 -0.35 0.39 16 31 H 0.04 0.30 8.07 -51.93 -0.42 -0.12 16 32 H 0.08 0.60 6.63 -51.92 -0.34 0.25 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.87 6.67 -51.93 -0.35 0.52 16 35 H 0.40 4.01 8.47 -40.82 -0.35 3.66 16 36 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 37 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.08 0.44 7.75 -51.93 -0.40 0.04 16 40 H 0.06 0.20 8.00 -51.93 -0.42 -0.22 16 41 H 0.11 -0.08 7.89 -51.93 -0.41 -0.49 16 42 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.22 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 387.20 15.07 5.84 5.84 Total: -1.00 -39.65 387.20 -11.04 -50.69 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.71 Total: -0.93 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.30 Total: -1.34 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.71 Total: -54.83 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.65 -11.04 -50.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567270612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.465 kcal (2) G-P(sol) polarization free energy of solvation -39.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds