Wall clock time and date at job start Tue Mar 31 2020 22:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 110.99716 * 2 1 4 4 C 1.52999 * 109.47651 * 66.04393 * 3 2 1 5 5 N 1.46502 * 109.47466 * 179.97438 * 4 3 2 6 6 C 1.34771 * 120.00406 * 179.97438 * 5 4 3 7 7 O 1.21284 * 119.99478 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00321 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.47084 * 180.02562 * 8 6 5 10 10 C 1.76200 * 99.99757 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00123 * 0.02562 * 10 9 8 12 12 C 1.38801 * 119.99727 * 180.27137 * 10 9 8 13 13 N 1.31625 * 120.00325 * 359.72915 * 12 10 9 14 14 Si 1.86797 * 119.99905 * 179.72377 * 12 10 9 15 15 H 1.48502 * 109.47010 * 60.00567 * 14 12 10 16 16 H 1.48497 * 109.47275 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47635 * 300.00249 * 14 12 10 18 18 C 1.46898 * 111.00407 * 236.04187 * 2 1 3 19 19 C 1.52997 * 109.47100 * 199.78863 * 18 2 1 20 20 H 1.09002 * 110.21563 * 302.53642 * 19 18 2 21 21 C 1.54432 * 110.24427 * 180.61402 * 19 18 2 22 22 C 1.54808 * 101.56444 * 266.47423 * 21 19 18 23 23 C 1.51474 * 104.23233 * 335.02696 * 22 21 19 24 24 N 1.31163 * 141.93999 * 196.57549 * 23 22 21 25 25 C 1.33165 * 109.83865 * 179.76325 * 24 23 22 26 26 N 1.30654 * 108.94555 * 0.04154 * 25 24 23 27 27 N 1.34118 * 110.04995 * 16.46771 * 23 22 21 28 28 H 1.09004 * 109.46859 * 54.77664 * 1 2 3 29 29 H 1.09000 * 109.46816 * 174.76766 * 1 2 3 30 30 H 1.08997 * 109.47684 * 294.77741 * 1 2 3 31 31 H 1.09007 * 109.47380 * 306.03672 * 3 2 1 32 32 H 1.09009 * 109.47237 * 186.04394 * 3 2 1 33 33 H 1.08999 * 109.47316 * 59.99912 * 4 3 2 34 34 H 1.09002 * 109.46800 * 299.99596 * 4 3 2 35 35 H 0.97006 * 119.99469 * 0.02562 * 5 4 3 36 36 H 1.08999 * 109.46839 * 60.00462 * 8 6 5 37 37 H 1.09002 * 109.46952 * 300.00344 * 8 6 5 38 38 H 0.96993 * 120.00555 * 179.97438 * 13 12 10 39 39 H 1.09002 * 109.46992 * 319.78734 * 18 2 1 40 40 H 1.08997 * 109.47372 * 79.78598 * 18 2 1 41 41 H 1.09005 * 110.98254 * 24.59184 * 21 19 18 42 42 H 1.08998 * 110.98750 * 148.40111 * 21 19 18 43 43 H 1.08995 * 110.45970 * 216.34567 * 22 21 19 44 44 H 1.08999 * 110.48852 * 93.72544 * 22 21 19 45 45 H 1.07994 * 125.52643 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 7 2.1569 3.4251 1.3184 6 6 1.9556 4.2242 2.3848 7 8 1.3398 3.8110 3.3445 8 6 2.4966 5.6307 2.3852 9 16 2.0659 6.4424 3.9446 10 6 2.8005 8.0220 3.6805 11 1 3.3201 8.2281 2.7564 12 6 2.7158 8.9996 4.6621 13 7 2.0822 8.7485 5.7882 14 14 3.5013 10.6716 4.3853 15 1 2.8961 11.3109 3.1893 16 1 3.2715 11.5297 5.5753 17 1 4.9612 10.5035 4.1714 18 6 1.9956 -0.7660 -1.1375 19 6 3.4455 -1.1653 -0.8561 20 1 4.0501 -0.2786 -0.6656 21 6 4.0222 -1.9592 -2.0485 22 6 3.7417 -3.4185 -1.6145 23 6 3.6694 -3.3501 -0.1030 24 7 3.7114 -4.1058 0.9682 25 6 3.5827 -3.3520 2.0584 26 7 3.4555 -2.1027 1.6977 27 7 3.5073 -2.0788 0.2925 28 1 -0.3633 0.5928 -0.8396 29 1 -0.3633 -1.0234 -0.0937 30 1 -0.3634 0.4307 0.9330 31 1 1.5611 1.9273 -0.8310 32 1 3.0798 1.3444 -0.1082 33 1 2.0657 1.5017 2.1492 34 1 0.5471 2.0846 1.4263 35 1 2.6491 3.7556 0.5506 36 1 2.0634 6.1869 1.5539 37 1 3.5810 5.6029 2.2779 38 1 2.0233 9.4315 6.4743 39 1 1.3931 -1.6630 -1.2815 40 1 1.9557 -0.1532 -2.0379 41 1 3.4943 -1.7166 -2.9709 42 1 5.0923 -1.7818 -2.1547 43 1 4.5554 -4.0724 -1.9281 44 1 2.7935 -3.7636 -2.0265 45 1 3.5830 -3.7146 3.0757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567270612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:04 Heat of formation + Delta-G solvation = 48.818785 kcal Electronic energy + Delta-G solvation = -26218.535640 eV Core-core repulsion = 22398.788418 eV Total energy + Delta-G solvation = -3819.747222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.34676 -40.71702 -39.38806 -37.54411 -35.63938 -34.59444 -32.88994 -31.86016 -30.79352 -30.09970 -29.31455 -27.67647 -26.91779 -24.81986 -23.52757 -22.47410 -21.91720 -21.50166 -21.14972 -19.84595 -17.92957 -17.78123 -17.16392 -17.08207 -17.00333 -16.88624 -16.33167 -16.09363 -15.89117 -15.55425 -15.33795 -15.24456 -14.89564 -14.75918 -14.60487 -14.32304 -13.77770 -13.56330 -13.33192 -13.18339 -13.11382 -12.91978 -12.86829 -12.77794 -12.61295 -12.44168 -12.32548 -12.11628 -11.89510 -11.75726 -11.13699 -11.03701 -10.90017 -10.66291 -10.34654 -10.29349 -10.18271 -9.33328 -8.69013 -8.35182 -6.14245 0.76317 1.24541 1.33876 1.43630 1.45418 1.55139 1.57111 2.00247 2.12391 2.26786 2.69517 2.95950 2.98706 3.31390 3.46155 3.61236 3.70876 3.78476 3.92563 3.99911 4.04147 4.13120 4.28156 4.32829 4.38282 4.42426 4.44458 4.47873 4.48231 4.56523 4.71645 4.80883 4.85962 4.89922 4.98642 5.00537 5.08984 5.34066 5.40541 5.51257 5.59528 5.77948 5.93328 6.00981 6.18737 6.46350 7.05496 7.20908 7.24485 8.73871 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.022068 B = 0.001827 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.482652 B =15325.110082 C =15497.905292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.557 5.557 3 C 0.060 3.940 4 C 0.130 3.870 5 N -0.710 5.710 6 C 0.532 3.468 7 O -0.568 6.568 8 C -0.126 4.126 9 S -0.157 6.157 10 C -0.546 4.546 11 H 0.085 0.915 12 C 0.011 3.989 13 N -0.912 5.912 14 Si 1.001 2.999 15 H -0.260 1.260 16 H -0.280 1.280 17 H -0.262 1.262 18 C 0.049 3.951 19 C 0.142 3.858 20 H 0.098 0.902 21 C -0.108 4.108 22 C -0.044 4.044 23 C 0.233 3.767 24 N -0.572 5.572 25 C 0.179 3.821 26 N -0.319 5.319 27 N -0.378 5.378 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.418 0.582 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.271 0.729 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.148 0.852 42 H 0.106 0.894 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.846 -23.850 -27.404 36.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.281 5.281 3 C -0.068 4.068 4 C 0.006 3.994 5 N -0.365 5.365 6 C 0.318 3.682 7 O -0.447 6.447 8 C -0.278 4.278 9 S 0.070 5.930 10 C -0.694 4.694 11 H 0.103 0.897 12 C -0.194 4.194 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.185 1.185 16 H -0.205 1.205 17 H -0.186 1.186 18 C -0.079 4.079 19 C 0.040 3.960 20 H 0.116 0.884 21 C -0.147 4.147 22 C -0.084 4.084 23 C -0.044 4.044 24 N -0.302 5.302 25 C -0.124 4.124 26 N -0.146 5.146 27 N -0.168 5.168 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.255 0.745 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.166 0.834 42 H 0.124 0.876 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.836 -24.280 -24.651 34.716 hybrid contribution 0.720 1.867 -0.972 2.225 sum 3.555 -22.413 -25.623 34.227 Atomic orbital electron populations 1.22379 0.86300 1.02108 1.01173 1.61629 1.08709 1.13262 1.44545 1.22168 1.01360 0.88349 0.94893 1.21151 0.98318 0.80957 0.99010 1.45585 1.58167 1.13451 1.19292 1.20140 0.78854 0.86846 0.82362 1.90705 1.42048 1.75963 1.35942 1.23349 1.05306 0.95204 1.03906 1.85664 1.74369 1.12895 1.20032 1.23170 1.41143 0.98573 1.06487 0.89700 1.26178 0.95561 1.03709 0.93921 1.70182 1.41280 1.36163 1.07220 0.84973 0.78839 0.75855 0.78130 1.18471 1.20487 1.18620 1.22620 0.93561 0.99131 0.92590 1.22563 0.98582 0.93361 0.81531 0.88355 1.23055 1.04353 0.90568 0.96749 1.21180 1.06991 0.99685 0.80514 1.26217 0.95659 0.83421 0.99078 1.70034 1.27493 1.35540 0.97124 1.26522 0.99023 0.86595 1.00229 1.78088 1.26006 1.21906 0.88572 1.51622 1.51717 1.09879 1.03614 0.93545 0.91194 0.92929 0.91433 0.89257 0.93847 0.92887 0.74472 0.86800 0.87087 0.92000 0.89513 0.88426 0.83399 0.87593 0.86103 0.85694 0.75037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.23 127.69 1.18 1.59 16 2 N -0.56 -8.36 4.63 -922.45 -4.27 -12.63 16 3 C 0.06 0.87 4.90 86.30 0.42 1.29 16 4 C 0.13 3.21 5.60 86.38 0.48 3.69 16 5 N -0.71 -18.27 5.56 -463.06 -2.57 -20.84 16 6 C 0.53 20.35 7.85 87.66 0.69 21.04 16 7 O -0.57 -27.90 15.86 -3.04 -0.05 -27.94 16 8 C -0.13 -5.05 6.16 71.23 0.44 -4.61 16 9 S -0.16 -8.87 20.57 -56.49 -1.16 -10.03 16 10 C -0.55 -31.36 9.50 67.95 0.65 -30.72 16 11 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 12 C 0.01 0.63 5.49 84.86 0.47 1.10 16 13 N -0.91 -56.74 13.22 21.65 0.29 -56.45 16 14 Si 1.00 43.70 29.55 68.60 2.03 45.72 16 15 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 16 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 18 C 0.05 0.36 4.57 86.30 0.39 0.75 16 19 C 0.14 1.22 3.55 45.40 0.16 1.38 16 20 H 0.10 0.92 6.78 -2.39 -0.02 0.91 16 21 C -0.11 0.07 6.72 31.70 0.21 0.28 16 22 C -0.04 -0.17 6.86 30.71 0.21 0.04 16 23 C 0.23 4.01 8.66 138.47 1.20 5.21 16 24 N -0.57 -13.53 11.20 -191.10 -2.14 -15.67 16 25 C 0.18 4.32 13.03 180.81 2.36 6.67 16 26 N -0.32 -8.53 12.80 -61.33 -0.79 -9.32 16 27 N -0.38 -7.11 4.46 -314.10 -1.40 -8.51 16 28 H 0.05 0.51 8.07 -2.38 -0.02 0.50 16 29 H 0.07 0.95 7.85 -2.39 -0.02 0.94 16 30 H 0.05 1.03 6.73 -2.39 -0.02 1.01 16 31 H 0.07 0.67 8.07 -2.38 -0.02 0.65 16 32 H 0.09 1.10 6.63 -2.38 -0.02 1.09 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 1.46 6.67 -2.39 -0.02 1.44 16 35 H 0.42 7.14 8.47 -92.70 -0.79 6.35 16 36 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 37 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 38 H 0.27 15.68 8.31 -92.71 -0.77 14.90 16 39 H 0.09 0.61 7.75 -2.39 -0.02 0.60 16 40 H 0.10 0.08 8.00 -2.39 -0.02 0.06 16 41 H 0.15 -1.16 7.89 -2.38 -0.02 -1.18 16 42 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.23 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -93.27 387.20 -0.98 -94.25 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.22 Total: 13.71 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 8.86 Total: 7.71 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -10.88 Total: -123.42 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.05 Total: -27.94 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Total: -93.27 -0.98 -94.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567270612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.073 kcal (2) G-P(sol) polarization free energy of solvation -93.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds