Wall clock time and date at job start Tue Mar 31 2020 22:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86807 * 119.99730 * 2 1 4 4 H 1.48497 * 109.46820 * 269.99348 * 3 2 1 5 5 H 1.48503 * 109.47173 * 29.99452 * 3 2 1 6 6 H 1.48496 * 109.47098 * 149.99910 * 3 2 1 7 7 C 1.38945 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99830 * 0.02562 * 7 2 1 9 9 N 1.37102 * 120.00250 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99770 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00107 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99677 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46968 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99985 * 176.46067 * 13 12 10 15 15 C 1.52993 * 112.85149 * 294.64636 * 14 13 12 16 16 N 1.46495 * 109.47209 * 311.60937 * 15 14 13 17 17 C 1.34775 * 120.00339 * 174.98261 * 16 15 14 18 18 O 1.21739 * 120.00201 * 0.02562 * 17 16 15 19 19 C 1.46375 * 120.00347 * 179.97438 * 17 16 15 20 20 C 1.33979 * 119.23339 * 0.02562 * 19 17 16 21 21 O 1.35003 * 121.69357 * 180.34238 * 20 19 17 22 22 C 1.43248 * 116.75850 * 342.81954 * 21 20 19 23 23 C 1.53544 * 108.09080 * 45.48769 * 22 21 20 24 24 O 1.36213 * 119.23651 * 179.72559 * 19 17 16 25 25 C 1.53777 * 113.61375 * 163.44600 * 14 13 12 26 26 C 1.53953 * 87.02386 * 220.05076 * 25 14 13 27 27 C 1.53784 * 113.61150 * 65.84251 * 14 13 12 28 28 H 0.97003 * 120.00161 * 0.02562 * 1 2 3 29 29 H 0.96994 * 119.99964 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47188 * 60.00480 * 12 10 9 31 31 H 1.09002 * 109.47459 * 300.00355 * 12 10 9 32 32 H 1.00899 * 111.00304 * 300.41271 * 13 12 10 33 33 H 1.09005 * 109.47048 * 71.60867 * 15 14 13 34 34 H 1.08996 * 109.47325 * 191.60769 * 15 14 13 35 35 H 0.97008 * 120.00154 * 354.98166 * 16 15 14 36 36 H 1.08007 * 119.15380 * 0.36302 * 20 19 17 37 37 H 1.09004 * 109.73462 * 165.13246 * 22 21 20 38 38 H 1.09000 * 109.73883 * 285.83333 * 22 21 20 39 39 H 1.09000 * 109.75842 * 61.47008 * 23 22 21 40 40 H 1.09003 * 109.75287 * 182.22054 * 23 22 21 41 41 H 1.08995 * 113.61776 * 334.56942 * 25 14 13 42 42 H 1.09006 * 113.61344 * 105.47352 * 25 14 13 43 43 H 1.09004 * 113.54015 * 270.81609 * 26 25 14 44 44 H 1.09002 * 113.67143 * 139.93454 * 26 25 14 45 45 H 1.09000 * 113.61239 * 254.52873 * 27 14 13 46 46 H 1.09002 * 113.61663 * 25.43463 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6528 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0001 12 6 5.5608 -2.3703 0.0011 13 7 6.0505 -3.7553 0.0004 14 6 7.5166 -3.7953 -0.0842 15 6 8.0502 -3.2497 -1.4102 16 7 7.3126 -3.8573 -2.5205 17 6 7.5422 -3.4507 -3.7848 18 8 8.3629 -2.5787 -4.0042 19 6 6.8057 -4.0582 -4.8943 20 6 5.9063 -5.0170 -4.6354 21 8 5.2042 -5.6156 -5.6210 22 6 5.1705 -4.9462 -6.8870 23 6 6.5975 -4.4899 -7.2232 24 8 7.0460 -3.6314 -6.1653 25 6 8.1195 -5.1538 0.3102 26 6 9.2308 -4.3628 1.0241 27 6 8.2211 -3.2098 1.1510 28 1 -0.4850 0.8401 -0.0004 29 1 3.8649 -0.3632 0.0014 30 1 5.9241 -1.8566 0.8911 31 1 5.9242 -1.8564 -0.8889 32 1 5.7215 -4.2556 0.8126 33 1 7.9202 -2.1677 -1.4366 34 1 9.1092 -3.4907 -1.5024 35 1 6.6589 -4.5524 -2.3458 36 1 5.7384 -5.3185 -3.6120 37 1 4.8122 -5.6308 -7.6559 38 1 4.5112 -4.0802 -6.8281 39 1 7.2528 -5.3573 -7.3018 40 1 6.5965 -3.9415 -8.1652 41 1 7.4901 -5.7307 0.9878 42 1 8.4744 -5.7372 -0.5394 43 1 10.0806 -4.1303 0.3823 44 1 9.5269 -4.7913 1.9816 45 1 8.6578 -2.2261 0.9792 46 1 7.6195 -3.2543 2.0589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570095845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:48 Heat of formation + Delta-G solvation = -88.036123 kcal Electronic energy + Delta-G solvation = -30226.510543 eV Core-core repulsion = 25925.783225 eV Total energy + Delta-G solvation = -4300.727318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24078 -40.35251 -38.94835 -38.19003 -37.08800 -34.54343 -34.16818 -33.31421 -32.23056 -31.65274 -29.45164 -27.57481 -26.71329 -25.88708 -25.43429 -24.12598 -22.51454 -21.79026 -19.72043 -19.40556 -19.30862 -18.44955 -18.35107 -18.07806 -16.75626 -16.56028 -15.89641 -15.80411 -15.51853 -15.05963 -14.99096 -14.85704 -14.81834 -14.54234 -14.34973 -14.14017 -14.07490 -13.41311 -13.22749 -13.13909 -12.82084 -12.55828 -12.47589 -12.35263 -12.25602 -12.00362 -11.47337 -11.24460 -11.21895 -11.08328 -10.89442 -10.79797 -10.59491 -10.46574 -9.98419 -9.95268 -9.57734 -9.14615 -8.64302 -8.33129 -8.21651 -8.17232 -6.32110 -3.83490 1.21108 2.49340 2.95896 3.02617 3.07937 3.15609 3.21724 3.58548 3.72649 4.01399 4.07225 4.10269 4.30899 4.39688 4.42574 4.58654 4.61022 4.65074 4.71883 4.82415 4.99555 5.07052 5.19342 5.22876 5.26072 5.38508 5.46733 5.51210 5.57665 5.64383 5.69621 5.70120 5.77354 5.80673 5.90101 5.93516 6.10342 6.31494 6.58298 6.99688 7.10434 7.46267 7.51261 7.57013 8.13179 8.16522 8.58476 8.93863 9.41628 9.81300 10.80898 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007714 B = 0.003901 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3628.755356 B = 7176.825544 C = 9452.087885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.043 3.957 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.450 3.550 11 O -0.565 6.565 12 C 0.047 3.953 13 N -0.653 5.653 14 C 0.078 3.922 15 C 0.155 3.845 16 N -0.706 5.706 17 C 0.576 3.424 18 O -0.533 6.533 19 C -0.076 4.076 20 C 0.017 3.983 21 O -0.298 6.298 22 C 0.012 3.988 23 C 0.019 3.981 24 O -0.287 6.287 25 C -0.128 4.128 26 C -0.140 4.140 27 C -0.166 4.166 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.356 0.644 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.410 0.590 36 H 0.182 0.818 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.339 -9.759 -6.732 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.160 4.160 3 Si 0.704 3.296 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.236 3.764 11 O -0.447 6.447 12 C -0.085 4.085 13 N -0.285 5.285 14 C -0.014 4.014 15 C 0.031 3.969 16 N -0.361 5.361 17 C 0.363 3.637 18 O -0.410 6.410 19 C -0.125 4.125 20 C -0.049 4.049 21 O -0.210 6.210 22 C -0.064 4.064 23 C -0.057 4.057 24 O -0.201 6.201 25 C -0.166 4.166 26 C -0.178 4.178 27 C -0.206 4.206 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.177 0.823 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.199 0.801 37 H 0.139 0.861 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.139 0.861 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.164 -9.812 -7.627 22.008 hybrid contribution 0.321 1.485 0.850 1.741 sum 18.484 -8.327 -6.777 21.376 Atomic orbital electron populations 1.69618 1.05636 1.27503 1.49333 1.25025 0.95472 0.97947 0.97593 0.86698 0.79760 0.84104 0.78999 1.19563 1.20155 1.19527 1.19418 0.79224 0.96594 1.48119 0.86274 1.42214 1.07546 1.06205 1.66966 1.19683 0.88109 0.84565 0.84040 1.90559 1.69443 1.30853 1.53851 1.21683 0.94998 0.90375 1.01472 1.59851 1.06032 1.13770 1.48817 1.22583 0.88060 0.97295 0.93501 1.21047 0.95122 0.98033 0.82714 1.45561 1.43777 1.42165 1.04620 1.17071 0.82246 0.82460 0.81913 1.90835 1.34883 1.30915 1.84405 1.20303 1.01908 1.03695 0.86581 1.23276 0.91385 0.96370 0.93909 1.86123 1.67587 1.47332 1.19921 1.23758 0.97679 0.99739 0.85182 1.23673 0.95115 0.96008 0.90884 1.86457 1.77675 1.44993 1.10955 1.23130 0.97309 0.95472 1.00670 1.22803 0.96842 0.97122 1.01009 1.23630 0.99057 0.99102 0.98832 0.91611 0.79726 0.93451 0.89584 0.82313 0.90859 0.90697 0.75213 0.80093 0.86070 0.89776 0.90536 0.86132 0.89297 0.90782 0.89952 0.91142 0.91007 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.71 13.96 55.50 0.77 -24.93 16 2 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 3 Si 0.88 19.57 27.74 -169.99 -4.72 14.85 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 7 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 9 N -0.59 -13.93 5.09 -10.96 -0.06 -13.99 16 10 C 0.45 9.86 7.83 -10.99 -0.09 9.78 16 11 O -0.57 -14.46 15.86 5.55 0.09 -14.37 16 12 C 0.05 0.74 5.80 -4.98 -0.03 0.71 16 13 N -0.65 -8.62 5.36 -100.39 -0.54 -9.16 16 14 C 0.08 0.79 0.77 -130.79 -0.10 0.69 16 15 C 0.15 1.74 4.49 -4.05 -0.02 1.72 16 16 N -0.71 -8.63 5.31 -61.72 -0.33 -8.95 16 17 C 0.58 8.61 7.73 -12.99 -0.10 8.51 16 18 O -0.53 -9.80 16.91 -10.06 -0.17 -9.97 16 19 C -0.08 -1.05 6.61 -37.81 -0.25 -1.30 16 20 C 0.02 0.21 10.57 29.23 0.31 0.52 16 21 O -0.30 -3.42 10.47 -30.83 -0.32 -3.75 16 22 C 0.01 0.10 7.29 37.44 0.27 0.37 16 23 C 0.02 0.17 7.32 37.44 0.27 0.44 16 24 O -0.29 -4.00 10.29 -45.75 -0.47 -4.47 16 25 C -0.13 -1.06 7.36 -25.83 -0.19 -1.25 16 26 C -0.14 -1.05 7.74 -25.83 -0.20 -1.25 16 27 C -0.17 -1.48 6.61 -25.91 -0.17 -1.65 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 30 H 0.05 0.66 7.62 -51.93 -0.40 0.27 16 31 H 0.09 1.32 6.85 -51.93 -0.36 0.96 16 32 H 0.36 4.84 8.38 -39.29 -0.33 4.51 16 33 H 0.07 0.92 7.33 -51.93 -0.38 0.54 16 34 H 0.07 0.77 7.35 -51.93 -0.38 0.39 16 35 H 0.41 4.62 5.95 -40.82 -0.24 4.38 16 36 H 0.18 1.86 6.08 -52.48 -0.32 1.54 16 37 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.73 8.01 -51.93 -0.42 0.31 16 42 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 43 H 0.08 0.58 7.66 -51.93 -0.40 0.18 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 379.22 15.07 5.71 5.71 Total: -1.00 -35.91 379.22 -6.95 -42.86 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -6.39 Total: 16.52 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -0.54 Total: 9.65 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.15 Total: -57.03 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.88 Total: -32.56 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.72 Total: 14.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.91 -6.95 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570095845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.175 kcal (2) G-P(sol) polarization free energy of solvation -35.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds