Wall clock time and date at job start Tue Mar 31 2020 22:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86807 * 119.99730 * 2 1 4 4 H 1.48497 * 109.46820 * 269.99348 * 3 2 1 5 5 H 1.48503 * 109.47173 * 29.99452 * 3 2 1 6 6 H 1.48496 * 109.47098 * 149.99910 * 3 2 1 7 7 C 1.38945 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99830 * 0.02562 * 7 2 1 9 9 N 1.37102 * 120.00250 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99770 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00107 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99677 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46968 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99985 * 176.46067 * 13 12 10 15 15 C 1.52993 * 112.85149 * 294.64636 * 14 13 12 16 16 N 1.46495 * 109.47209 * 311.60937 * 15 14 13 17 17 C 1.34775 * 120.00339 * 174.98261 * 16 15 14 18 18 O 1.21739 * 120.00201 * 0.02562 * 17 16 15 19 19 C 1.46375 * 120.00347 * 179.97438 * 17 16 15 20 20 C 1.33979 * 119.23339 * 0.02562 * 19 17 16 21 21 O 1.35003 * 121.69357 * 180.34238 * 20 19 17 22 22 C 1.43248 * 116.75850 * 342.81954 * 21 20 19 23 23 C 1.53544 * 108.09080 * 45.48769 * 22 21 20 24 24 O 1.36213 * 119.23651 * 179.72559 * 19 17 16 25 25 C 1.53777 * 113.61375 * 163.44600 * 14 13 12 26 26 C 1.53953 * 87.02386 * 220.05076 * 25 14 13 27 27 C 1.53784 * 113.61150 * 65.84251 * 14 13 12 28 28 H 0.97003 * 120.00161 * 0.02562 * 1 2 3 29 29 H 0.96994 * 119.99964 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47188 * 60.00480 * 12 10 9 31 31 H 1.09002 * 109.47459 * 300.00355 * 12 10 9 32 32 H 1.00899 * 111.00304 * 300.41271 * 13 12 10 33 33 H 1.09005 * 109.47048 * 71.60867 * 15 14 13 34 34 H 1.08996 * 109.47325 * 191.60769 * 15 14 13 35 35 H 0.97008 * 120.00154 * 354.98166 * 16 15 14 36 36 H 1.08007 * 119.15380 * 0.36302 * 20 19 17 37 37 H 1.09004 * 109.73462 * 165.13246 * 22 21 20 38 38 H 1.09000 * 109.73883 * 285.83333 * 22 21 20 39 39 H 1.09000 * 109.75842 * 61.47008 * 23 22 21 40 40 H 1.09003 * 109.75287 * 182.22054 * 23 22 21 41 41 H 1.08995 * 113.61776 * 334.56942 * 25 14 13 42 42 H 1.09006 * 113.61344 * 105.47352 * 25 14 13 43 43 H 1.09004 * 113.54015 * 270.81609 * 26 25 14 44 44 H 1.09002 * 113.67143 * 139.93454 * 26 25 14 45 45 H 1.09000 * 113.61239 * 254.52873 * 27 14 13 46 46 H 1.09002 * 113.61663 * 25.43463 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6528 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0001 12 6 5.5608 -2.3703 0.0011 13 7 6.0505 -3.7553 0.0004 14 6 7.5166 -3.7953 -0.0842 15 6 8.0502 -3.2497 -1.4102 16 7 7.3126 -3.8573 -2.5205 17 6 7.5422 -3.4507 -3.7848 18 8 8.3629 -2.5787 -4.0042 19 6 6.8057 -4.0582 -4.8943 20 6 5.9063 -5.0170 -4.6354 21 8 5.2042 -5.6156 -5.6210 22 6 5.1705 -4.9462 -6.8870 23 6 6.5975 -4.4899 -7.2232 24 8 7.0460 -3.6314 -6.1653 25 6 8.1195 -5.1538 0.3102 26 6 9.2308 -4.3628 1.0241 27 6 8.2211 -3.2098 1.1510 28 1 -0.4850 0.8401 -0.0004 29 1 3.8649 -0.3632 0.0014 30 1 5.9241 -1.8566 0.8911 31 1 5.9242 -1.8564 -0.8889 32 1 5.7215 -4.2556 0.8126 33 1 7.9202 -2.1677 -1.4366 34 1 9.1092 -3.4907 -1.5024 35 1 6.6589 -4.5524 -2.3458 36 1 5.7384 -5.3185 -3.6120 37 1 4.8122 -5.6308 -7.6559 38 1 4.5112 -4.0802 -6.8281 39 1 7.2528 -5.3573 -7.3018 40 1 6.5965 -3.9415 -8.1652 41 1 7.4901 -5.7307 0.9878 42 1 8.4744 -5.7372 -0.5394 43 1 10.0806 -4.1303 0.3823 44 1 9.5269 -4.7913 1.9816 45 1 8.6578 -2.2261 0.9792 46 1 7.6195 -3.2543 2.0589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570095845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:47 Heat of formation + Delta-G solvation = -117.515776 kcal Electronic energy + Delta-G solvation = -30227.788877 eV Core-core repulsion = 25925.783225 eV Total energy + Delta-G solvation = -4302.005652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.15067 -41.26334 -40.19592 -39.74226 -37.99744 -36.06949 -35.58199 -34.57804 -33.71083 -33.09096 -30.29881 -28.85028 -27.83053 -26.70282 -26.30987 -25.71918 -23.42685 -22.72093 -21.25647 -20.65178 -20.29021 -20.13984 -19.34084 -19.00110 -17.97920 -17.45520 -17.07245 -16.96189 -16.78590 -16.54155 -16.03246 -15.89645 -15.77784 -15.67230 -15.55836 -15.24123 -15.04769 -14.90057 -14.42267 -14.31296 -14.17288 -13.99659 -13.77498 -13.22945 -13.20443 -13.11783 -12.99202 -12.44533 -12.38165 -12.01958 -12.00396 -11.92270 -11.72885 -11.52337 -11.49205 -11.19994 -11.04095 -10.42005 -10.24204 -10.19756 -9.29951 -9.27746 -8.41922 -6.01715 0.21115 1.28010 1.33370 1.41126 1.58835 1.95980 2.04109 2.20842 2.23924 2.61773 2.80803 3.14803 3.36468 3.37826 3.53507 3.62498 3.70677 3.77750 3.94104 3.95625 3.97571 4.14203 4.23687 4.40463 4.42719 4.44799 4.50494 4.60525 4.60918 4.66644 4.82852 4.86360 4.90570 5.11421 5.14142 5.17272 5.30918 5.46460 5.53156 5.74272 5.90639 6.02809 6.18385 6.40576 6.52120 6.59326 6.88240 7.09805 7.40182 7.95829 8.75516 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007714 B = 0.003901 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3628.755356 B = 7176.825544 C = 9452.087885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.957 3.043 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.325 4.325 8 H 0.059 0.941 9 N -0.595 5.595 10 C 0.452 3.548 11 O -0.606 6.606 12 C 0.064 3.936 13 N -0.661 5.661 14 C 0.078 3.922 15 C 0.152 3.848 16 N -0.695 5.695 17 C 0.572 3.428 18 O -0.576 6.576 19 C -0.100 4.100 20 C 0.034 3.966 21 O -0.308 6.308 22 C 0.007 3.993 23 C 0.014 3.986 24 O -0.319 6.319 25 C -0.123 4.123 26 C -0.130 4.130 27 C -0.164 4.164 28 H 0.278 0.722 29 H 0.387 0.613 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.355 0.645 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.414 0.586 36 H 0.194 0.806 37 H 0.158 0.842 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.147 0.853 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.926 -9.357 -6.638 23.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.210 4.210 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.454 4.454 8 H 0.078 0.922 9 N -0.236 5.236 10 C 0.240 3.760 11 O -0.489 6.489 12 C -0.068 4.068 13 N -0.293 5.293 14 C -0.014 4.014 15 C 0.028 3.972 16 N -0.349 5.349 17 C 0.361 3.639 18 O -0.458 6.458 19 C -0.149 4.149 20 C -0.033 4.033 21 O -0.220 6.220 22 C -0.068 4.068 23 C -0.061 4.061 24 O -0.234 6.234 25 C -0.161 4.161 26 C -0.168 4.168 27 C -0.204 4.204 28 H 0.088 0.912 29 H 0.222 0.778 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.176 0.824 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.253 0.747 36 H 0.210 0.790 37 H 0.176 0.824 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.165 0.835 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 20.770 -9.452 -7.515 24.025 hybrid contribution -0.559 1.158 0.758 1.492 sum 20.211 -8.295 -6.757 22.868 Atomic orbital electron populations 1.69789 1.07963 1.29109 1.50514 1.26006 0.96381 1.02372 0.96280 0.85467 0.79598 0.77422 0.79714 1.18731 1.19816 1.15640 1.19007 0.81418 0.94934 1.50026 0.92241 1.42082 1.05888 1.07657 1.67995 1.20894 0.90766 0.83310 0.81038 1.90539 1.71249 1.32379 1.54775 1.21499 0.89681 0.92456 1.03154 1.59808 1.08239 1.12239 1.49053 1.22659 0.85962 0.99215 0.93549 1.21170 0.95822 0.97406 0.82757 1.45546 1.43394 1.41692 1.04218 1.17357 0.81798 0.81982 0.82808 1.90796 1.36908 1.32976 1.85085 1.20257 1.03116 1.04835 0.86665 1.23457 0.90207 0.95018 0.94652 1.86110 1.67191 1.47769 1.20925 1.24065 0.97648 1.00414 0.84653 1.24016 0.95115 0.96397 0.90525 1.86390 1.78490 1.46865 1.11651 1.23133 0.97373 0.94564 1.00989 1.22777 0.96458 0.95947 1.01591 1.23617 0.99177 0.99873 0.97697 0.91202 0.77847 0.90634 0.88649 0.82432 0.91983 0.89453 0.74674 0.78979 0.82411 0.90480 0.89398 0.83488 0.89037 0.90259 0.89204 0.90016 0.90572 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.24 13.96 21.66 0.30 -55.94 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 3 Si 0.96 39.56 27.74 68.60 1.90 41.47 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.23 -8.17 6.52 99.48 0.65 -7.53 16 7 C -0.32 -18.90 10.16 84.04 0.85 -18.05 16 8 H 0.06 4.09 7.39 -2.91 -0.02 4.07 16 9 N -0.59 -27.95 5.09 -306.98 -1.56 -29.51 16 10 C 0.45 19.73 7.83 87.66 0.69 20.41 16 11 O -0.61 -31.77 15.86 -3.06 -0.05 -31.82 16 12 C 0.06 1.89 5.80 85.56 0.50 2.39 16 13 N -0.66 -16.36 5.36 -471.54 -2.53 -18.89 16 14 C 0.08 1.39 0.77 4.05 0.00 1.39 16 15 C 0.15 3.16 4.49 86.38 0.39 3.55 16 16 N -0.69 -16.36 5.31 -467.38 -2.48 -18.84 16 17 C 0.57 17.09 7.73 86.36 0.67 17.76 16 18 O -0.58 -21.46 16.91 10.08 0.17 -21.29 16 19 C -0.10 -2.76 6.61 23.42 0.15 -2.61 16 20 C 0.03 0.79 10.57 66.85 0.71 1.50 16 21 O -0.31 -6.74 10.47 -69.25 -0.73 -7.46 16 22 C 0.01 0.10 7.29 72.16 0.53 0.63 16 23 C 0.01 0.23 7.32 72.16 0.53 0.76 16 24 O -0.32 -8.87 10.29 -71.76 -0.74 -9.61 16 25 C -0.12 -1.70 7.36 31.18 0.23 -1.47 16 26 C -0.13 -1.52 7.74 31.18 0.24 -1.28 16 27 C -0.16 -2.41 6.61 31.12 0.21 -2.20 16 28 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.39 15.46 5.76 -92.71 -0.53 14.93 16 30 H 0.08 1.85 7.62 -2.39 -0.02 1.83 16 31 H 0.10 2.71 6.85 -2.39 -0.02 2.69 16 32 H 0.35 9.13 8.38 -89.69 -0.75 8.38 16 33 H 0.06 1.46 7.33 -2.38 -0.02 1.44 16 34 H 0.09 1.63 7.35 -2.39 -0.02 1.61 16 35 H 0.41 8.93 5.95 -92.70 -0.55 8.38 16 36 H 0.19 3.82 6.08 -2.91 -0.02 3.80 16 37 H 0.16 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.09 1.27 8.01 -2.39 -0.02 1.25 16 42 H 0.08 1.04 8.10 -2.38 -0.02 1.02 16 43 H 0.09 0.96 7.66 -2.39 -0.02 0.94 16 44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 1.08 8.10 -2.39 -0.02 1.07 16 46 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -83.34 379.22 -0.40 -83.74 By element: Atomic # 1 Polarization: 46.40 SS G_CDS: -0.85 Total: 45.55 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 6.15 Total: 22.60 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -6.27 Total: -123.19 kcal Atomic # 8 Polarization: -68.83 SS G_CDS: -1.34 Total: -70.18 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 1.90 Total: 41.47 kcal Total: -83.34 -0.40 -83.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570095845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.775 kcal (2) G-P(sol) polarization free energy of solvation -83.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds