Wall clock time and date at job start Tue Mar 31 2020 22:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99807 * 2 1 4 4 O 1.21282 * 119.99540 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99961 * 0.02562 * 3 2 1 6 6 S 1.81003 * 109.46786 * 179.97438 * 5 3 2 7 7 C 1.76199 * 99.99618 * 179.97438 * 6 5 3 8 8 H 1.07996 * 120.00364 * 0.02562 * 7 6 5 9 9 C 1.38805 * 120.00088 * 179.97438 * 7 6 5 10 10 N 1.31628 * 119.99525 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00205 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47317 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46980 * 119.99858 * 11 9 7 14 14 H 1.48493 * 109.47246 * 239.99909 * 11 9 7 15 15 C 1.46499 * 120.00076 * 180.02562 * 2 1 3 16 16 H 1.09004 * 109.47305 * 175.68277 * 15 2 1 17 17 C 1.52997 * 109.47342 * 55.67704 * 15 2 1 18 18 N 1.46903 * 109.46862 * 55.00169 * 17 15 2 19 19 C 1.46900 * 110.99743 * 180.02562 * 18 17 15 20 20 C 1.50697 * 109.47073 * 180.02562 * 19 18 17 21 21 C 1.35359 * 126.90903 * 264.68219 * 20 19 18 22 22 N 1.33771 * 106.49346 * 179.90399 * 21 20 19 23 23 N 1.28632 * 108.88929 * 0.36847 * 22 21 20 24 24 N 1.28720 * 110.17724 * 359.76628 * 23 22 21 25 25 H 0.96994 * 125.86489 * 180.02562 * 24 23 22 26 26 C 1.53003 * 109.47045 * 295.67882 * 15 2 1 27 27 C 1.53002 * 117.49803 * 253.27184 * 26 15 2 28 28 C 1.53004 * 117.49907 * 184.61092 * 26 15 2 29 29 H 1.08993 * 109.47272 * 275.38333 * 1 2 3 30 30 H 1.08994 * 109.46896 * 35.38671 * 1 2 3 31 31 H 1.09001 * 109.46956 * 155.38479 * 1 2 3 32 32 H 1.09000 * 109.46698 * 299.99741 * 5 3 2 33 33 H 1.08991 * 109.47249 * 59.99704 * 5 3 2 34 34 H 0.97004 * 119.99849 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47169 * 295.00146 * 17 15 2 36 36 H 1.09003 * 109.47053 * 174.99674 * 17 15 2 37 37 H 1.00897 * 111.00205 * 56.05041 * 18 17 15 38 38 H 1.09007 * 109.47283 * 299.99414 * 19 18 17 39 39 H 1.09001 * 109.47653 * 59.99835 * 19 18 17 40 40 H 1.08002 * 126.75059 * 0.04225 * 21 20 19 41 41 H 1.08996 * 115.55206 * 38.93742 * 26 15 2 42 42 H 1.09003 * 117.49996 * 359.97438 * 27 26 15 43 43 H 1.09001 * 117.49941 * 145.01996 * 27 26 15 44 44 H 1.09001 * 117.49639 * 214.97904 * 28 26 15 45 45 H 1.09002 * 117.49668 * 0.02562 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5616 3.8481 0.0012 7 6 1.4414 5.2082 0.0010 8 1 0.3762 5.0305 0.0011 9 6 1.9281 6.5081 0.0019 10 7 3.2264 6.7247 0.0034 11 14 0.7406 7.9500 0.0010 12 1 -0.6548 7.4421 0.0000 13 1 0.9650 8.7767 1.2140 14 1 0.9677 8.7775 -1.2109 15 6 2.1975 -1.2687 -0.0006 16 1 3.2667 -1.0710 -0.0778 17 6 1.7482 -2.1166 -1.1922 18 7 1.9121 -1.3450 -2.4316 19 6 1.4889 -2.1291 -3.5995 20 6 1.6717 -1.3071 -4.8493 21 6 0.7337 -0.5566 -5.4730 22 7 1.3332 -0.0035 -6.5333 23 7 2.5588 -0.3922 -6.5685 24 7 2.8048 -1.1755 -5.5770 25 1 3.6563 -1.5983 -5.3845 26 6 1.9112 -2.0235 1.2992 27 6 3.0264 -2.0772 2.3453 28 6 2.6711 -3.3295 1.5398 29 1 -0.3633 0.0964 1.0231 30 1 -0.3633 0.8378 -0.5951 31 1 -0.3633 -0.9343 -0.4281 32 1 0.7584 2.5302 -0.8892 33 1 0.7590 2.5298 0.8907 34 1 3.5666 7.6331 0.0044 35 1 0.6999 -2.3889 -1.0697 36 1 2.3549 -3.0207 -1.2442 37 1 2.8635 -1.0256 -2.5355 38 1 2.0935 -3.0336 -3.6685 39 1 0.4388 -2.4012 -3.4935 40 1 -0.2956 -0.4277 -5.1724 41 1 0.8846 -1.9646 1.6606 42 1 3.9643 -1.5752 2.1074 43 1 2.7335 -2.0541 3.3949 44 1 2.1444 -4.1297 2.0598 45 1 3.3753 -3.6508 0.7723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576730326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:27 Heat of formation + Delta-G solvation = 94.112592 kcal Electronic energy + Delta-G solvation = -27036.064604 eV Core-core repulsion = 23218.281469 eV Total energy + Delta-G solvation = -3817.783135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.45906 -39.93635 -37.76854 -36.50267 -34.81154 -33.48597 -32.38314 -32.05697 -30.04008 -28.16387 -26.75673 -25.63525 -25.34685 -23.28342 -23.00715 -22.29778 -22.01386 -20.60595 -19.24986 -18.45330 -17.64897 -16.99849 -16.47415 -16.26161 -16.00707 -15.48122 -15.07623 -14.78802 -14.75563 -14.62490 -14.30159 -14.00418 -13.78343 -13.39104 -13.03763 -12.88448 -12.72193 -12.45734 -12.23873 -12.13792 -11.80606 -11.77981 -11.64848 -11.31248 -11.07964 -11.03340 -10.96844 -10.76476 -10.74377 -10.63782 -10.25668 -9.74196 -9.48076 -9.27919 -9.02827 -8.82245 -8.40947 -8.16721 -6.44333 -6.17487 -3.87023 1.31121 2.40080 2.50852 2.93796 3.14104 3.25037 3.28706 3.34256 3.51551 3.72052 3.79425 4.19725 4.24969 4.31817 4.48119 4.63738 4.68619 4.76483 4.92056 4.97091 5.02568 5.07508 5.13379 5.16314 5.17874 5.18316 5.33040 5.40978 5.43088 5.55885 5.58638 5.71600 5.76613 5.81160 5.93247 5.95030 5.99829 6.05909 6.22766 6.44887 6.60296 6.71679 6.91425 7.62812 7.64991 8.27468 8.39987 8.65404 9.28272 10.90084 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007685 B = 0.003620 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3642.449639 B = 7733.345294 C =10493.357697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.600 5.600 3 C 0.541 3.459 4 O -0.524 6.524 5 C -0.147 4.147 6 S -0.064 6.064 7 C -0.532 4.532 8 H 0.072 0.928 9 C 0.073 3.927 10 N -0.868 5.868 11 Si 0.917 3.083 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.175 3.825 16 H 0.099 0.901 17 C 0.054 3.946 18 N -0.677 5.677 19 C 0.136 3.864 20 C -0.012 4.012 21 C -0.025 4.025 22 N -0.266 5.266 23 N -0.077 5.077 24 N -0.389 5.389 25 H 0.445 0.555 26 C -0.163 4.163 27 C -0.170 4.170 28 C -0.176 4.176 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.267 0.733 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.346 0.654 38 H 0.043 0.957 39 H 0.103 0.897 40 H 0.191 0.809 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 -25.883 -2.041 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.334 5.334 3 C 0.330 3.670 4 O -0.399 6.399 5 C -0.297 4.297 6 S 0.163 5.837 7 C -0.681 4.681 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.504 5.504 11 Si 0.744 3.256 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.070 3.930 16 H 0.117 0.883 17 C -0.076 4.076 18 N -0.309 5.309 19 C 0.005 3.995 20 C -0.146 4.146 21 C -0.183 4.183 22 N -0.133 5.133 23 N -0.058 5.058 24 N -0.110 5.110 25 H 0.290 0.710 26 C -0.182 4.182 27 C -0.207 4.207 28 C -0.213 4.213 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.165 0.835 38 H 0.061 0.939 39 H 0.122 0.878 40 H 0.208 0.792 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.868 -24.644 -3.291 25.162 hybrid contribution -1.434 -0.431 1.102 1.860 sum -5.303 -25.075 -2.189 25.723 Atomic orbital electron populations 1.21629 0.79919 1.03003 1.01020 1.47512 1.06474 1.04554 1.74880 1.20224 0.87784 0.84490 0.74525 1.90659 1.13871 1.86747 1.48664 1.23517 1.04442 0.97208 1.04577 1.85346 1.08252 0.93453 1.96682 1.22900 0.94339 0.92223 1.58597 0.90945 1.24982 0.95635 0.98361 0.94591 1.70031 1.11734 1.21471 1.47148 0.86134 0.80423 0.81191 0.77868 1.19590 1.20620 1.20563 1.20464 0.98349 0.83132 0.91069 0.88298 1.22295 1.02074 0.94353 0.88878 1.60341 1.30390 1.39692 1.00489 1.20331 1.02969 0.91758 0.84478 1.22113 0.87582 1.06143 0.98782 1.23420 1.01775 0.98712 0.94410 1.75140 0.99135 1.19732 1.19248 1.78321 1.12246 1.06951 1.08249 1.45111 1.12731 1.34050 1.19107 0.71003 1.22578 0.97985 1.00006 0.97667 1.23014 0.99849 1.00896 0.96979 1.22925 1.03567 0.91289 1.03568 0.93361 0.90965 0.91339 0.89248 0.89564 0.92314 0.90062 0.93998 0.83533 0.93905 0.87836 0.79217 0.87465 0.88337 0.88757 0.88748 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 9.28 59.85 0.56 1.43 16 2 N -0.60 -7.75 2.49 -173.93 -0.43 -8.18 16 3 C 0.54 9.99 7.69 -10.98 -0.08 9.91 16 4 O -0.52 -11.55 15.20 5.56 0.08 -11.46 16 5 C -0.15 -3.02 4.78 36.01 0.17 -2.85 16 6 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16 7 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 10 N -0.87 -26.55 13.22 55.49 0.73 -25.81 16 11 Si 0.92 21.77 29.55 -169.99 -5.02 16.74 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 15 C 0.17 1.81 2.46 -67.93 -0.17 1.64 16 16 H 0.10 1.28 6.71 -51.93 -0.35 0.94 16 17 C 0.05 0.39 4.67 -3.82 -0.02 0.37 16 18 N -0.68 -5.68 6.21 -115.05 -0.71 -6.40 16 19 C 0.14 0.82 6.25 -4.98 -0.03 0.79 16 20 C -0.01 -0.11 6.82 -82.09 -0.56 -0.67 16 21 C -0.03 -0.28 11.99 -17.73 -0.21 -0.49 16 22 N -0.27 -3.77 12.41 30.24 0.38 -3.40 16 23 N -0.08 -1.02 13.38 60.35 0.81 -0.21 16 24 N -0.39 -3.56 6.98 33.54 0.23 -3.33 16 25 H 0.45 2.45 8.96 -190.40 -1.71 0.74 16 26 C -0.16 -1.43 5.17 -90.62 -0.47 -1.90 16 27 C -0.17 -1.62 10.18 -26.69 -0.27 -1.89 16 28 C -0.18 -1.25 9.88 -26.69 -0.26 -1.51 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.79 6.66 -51.93 -0.35 0.44 16 31 H 0.07 0.51 6.31 -51.93 -0.33 0.18 16 32 H 0.09 1.75 7.41 -51.92 -0.38 1.37 16 33 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 34 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 35 H 0.08 0.51 6.74 -51.93 -0.35 0.16 16 36 H 0.04 0.24 7.79 -51.93 -0.40 -0.16 16 37 H 0.35 3.41 8.72 -39.29 -0.34 3.06 16 38 H 0.04 0.18 8.14 -51.92 -0.42 -0.24 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.19 1.58 8.06 -52.49 -0.42 1.15 16 41 H 0.11 0.90 7.69 -51.93 -0.40 0.50 16 42 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.60 7.96 -51.93 -0.41 0.19 16 LS Contribution 391.53 15.07 5.90 5.90 Total: -1.00 -37.41 391.53 -9.34 -46.75 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.94 Total: 1.59 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -1.15 Total: -8.23 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 1.00 Total: -47.32 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.41 -9.34 -46.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576730326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.863 kcal (2) G-P(sol) polarization free energy of solvation -37.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds