Wall clock time and date at job start Tue Mar 31 2020 22:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34779 * 119.99807 * 2 1 4 4 O 1.21282 * 119.99540 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99961 * 0.02562 * 3 2 1 6 6 S 1.81003 * 109.46786 * 179.97438 * 5 3 2 7 7 C 1.76199 * 99.99618 * 179.97438 * 6 5 3 8 8 H 1.07996 * 120.00364 * 0.02562 * 7 6 5 9 9 C 1.38805 * 120.00088 * 179.97438 * 7 6 5 10 10 N 1.31628 * 119.99525 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00205 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47317 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46980 * 119.99858 * 11 9 7 14 14 H 1.48493 * 109.47246 * 239.99909 * 11 9 7 15 15 C 1.46499 * 120.00076 * 180.02562 * 2 1 3 16 16 H 1.09004 * 109.47305 * 175.68277 * 15 2 1 17 17 C 1.52997 * 109.47342 * 55.67704 * 15 2 1 18 18 N 1.46903 * 109.46862 * 55.00169 * 17 15 2 19 19 C 1.46900 * 110.99743 * 180.02562 * 18 17 15 20 20 C 1.50697 * 109.47073 * 180.02562 * 19 18 17 21 21 C 1.35359 * 126.90903 * 264.68219 * 20 19 18 22 22 N 1.33771 * 106.49346 * 179.90399 * 21 20 19 23 23 N 1.28632 * 108.88929 * 0.36847 * 22 21 20 24 24 N 1.28720 * 110.17724 * 359.76628 * 23 22 21 25 25 H 0.96994 * 125.86489 * 180.02562 * 24 23 22 26 26 C 1.53003 * 109.47045 * 295.67882 * 15 2 1 27 27 C 1.53002 * 117.49803 * 253.27184 * 26 15 2 28 28 C 1.53004 * 117.49907 * 184.61092 * 26 15 2 29 29 H 1.08993 * 109.47272 * 275.38333 * 1 2 3 30 30 H 1.08994 * 109.46896 * 35.38671 * 1 2 3 31 31 H 1.09001 * 109.46956 * 155.38479 * 1 2 3 32 32 H 1.09000 * 109.46698 * 299.99741 * 5 3 2 33 33 H 1.08991 * 109.47249 * 59.99704 * 5 3 2 34 34 H 0.97004 * 119.99849 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47169 * 295.00146 * 17 15 2 36 36 H 1.09003 * 109.47053 * 174.99674 * 17 15 2 37 37 H 1.00897 * 111.00205 * 56.05041 * 18 17 15 38 38 H 1.09007 * 109.47283 * 299.99414 * 19 18 17 39 39 H 1.09001 * 109.47653 * 59.99835 * 19 18 17 40 40 H 1.08002 * 126.75059 * 0.04225 * 21 20 19 41 41 H 1.08996 * 115.55206 * 38.93742 * 26 15 2 42 42 H 1.09003 * 117.49996 * 359.97438 * 27 26 15 43 43 H 1.09001 * 117.49941 * 145.01996 * 27 26 15 44 44 H 1.09001 * 117.49639 * 214.97904 * 28 26 15 45 45 H 1.09002 * 117.49668 * 0.02562 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5616 3.8481 0.0012 7 6 1.4414 5.2082 0.0010 8 1 0.3762 5.0305 0.0011 9 6 1.9281 6.5081 0.0019 10 7 3.2264 6.7247 0.0034 11 14 0.7406 7.9500 0.0010 12 1 -0.6548 7.4421 0.0000 13 1 0.9650 8.7767 1.2140 14 1 0.9677 8.7775 -1.2109 15 6 2.1975 -1.2687 -0.0006 16 1 3.2667 -1.0710 -0.0778 17 6 1.7482 -2.1166 -1.1922 18 7 1.9121 -1.3450 -2.4316 19 6 1.4889 -2.1291 -3.5995 20 6 1.6717 -1.3071 -4.8493 21 6 0.7337 -0.5566 -5.4730 22 7 1.3332 -0.0035 -6.5333 23 7 2.5588 -0.3922 -6.5685 24 7 2.8048 -1.1755 -5.5770 25 1 3.6563 -1.5983 -5.3845 26 6 1.9112 -2.0235 1.2992 27 6 3.0264 -2.0772 2.3453 28 6 2.6711 -3.3295 1.5398 29 1 -0.3633 0.0964 1.0231 30 1 -0.3633 0.8378 -0.5951 31 1 -0.3633 -0.9343 -0.4281 32 1 0.7584 2.5302 -0.8892 33 1 0.7590 2.5298 0.8907 34 1 3.5666 7.6331 0.0044 35 1 0.6999 -2.3889 -1.0697 36 1 2.3549 -3.0207 -1.2442 37 1 2.8635 -1.0256 -2.5355 38 1 2.0935 -3.0336 -3.6685 39 1 0.4388 -2.4012 -3.4935 40 1 -0.2956 -0.4277 -5.1724 41 1 0.8846 -1.9646 1.6606 42 1 3.9643 -1.5752 2.1074 43 1 2.7335 -2.0541 3.3949 44 1 2.1444 -4.1297 2.0598 45 1 3.3753 -3.6508 0.7723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576730326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:26 Heat of formation + Delta-G solvation = 65.549567 kcal Electronic energy + Delta-G solvation = -27037.303190 eV Core-core repulsion = 23218.281469 eV Total energy + Delta-G solvation = -3819.021721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.27022 -41.05272 -38.78887 -37.11696 -35.89401 -34.58388 -34.32174 -32.86627 -31.24041 -29.28287 -27.70083 -27.60806 -26.28755 -24.08106 -23.72486 -22.98296 -22.70850 -21.60818 -20.34686 -19.56864 -19.21752 -18.23317 -17.29298 -17.19412 -16.91943 -16.88265 -16.51898 -16.16164 -15.74233 -15.53488 -15.28372 -15.05718 -14.70441 -14.50683 -14.26136 -14.16781 -13.72271 -13.49098 -13.30818 -13.15585 -13.00265 -12.91992 -12.71731 -12.58903 -12.54147 -12.38629 -12.08817 -11.85217 -11.70501 -11.61870 -11.35203 -11.15662 -10.95427 -10.71597 -10.26855 -10.24836 -9.52510 -9.34690 -8.65388 -8.34813 -6.11987 0.54790 1.27878 1.40634 1.47208 1.54816 1.58319 1.71433 1.87230 2.17385 2.28744 2.88930 2.99484 3.16602 3.31367 3.56412 3.69742 3.77008 3.90192 3.95996 4.05803 4.14746 4.23318 4.27000 4.33942 4.40075 4.41558 4.49718 4.52449 4.62991 4.69685 4.81919 4.82831 4.87079 4.93153 5.05917 5.09460 5.19670 5.27125 5.32408 5.41736 5.71091 5.91799 6.02601 6.19892 6.20188 6.42136 7.06753 7.29491 7.42838 8.74756 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.007685 B = 0.003620 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3642.449639 B = 7733.345294 C =10493.357697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.582 5.582 3 C 0.538 3.462 4 O -0.572 6.572 5 C -0.120 4.120 6 S -0.154 6.154 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.014 3.986 10 N -0.912 5.912 11 Si 0.997 3.003 12 H -0.256 1.256 13 H -0.272 1.272 14 H -0.275 1.275 15 C 0.172 3.828 16 H 0.066 0.934 17 C 0.064 3.936 18 N -0.697 5.697 19 C 0.142 3.858 20 C 0.005 3.995 21 C -0.044 4.044 22 N -0.309 5.309 23 N -0.117 5.117 24 N -0.376 5.376 25 H 0.459 0.541 26 C -0.163 4.163 27 C -0.199 4.199 28 C -0.144 4.144 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.270 0.730 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.334 0.666 38 H 0.071 0.929 39 H 0.127 0.873 40 H 0.211 0.789 41 H 0.121 0.879 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.117 0.883 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 -28.592 -1.401 29.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.313 5.313 3 C 0.325 3.675 4 O -0.452 6.452 5 C -0.271 4.271 6 S 0.073 5.927 7 C -0.692 4.692 8 H 0.099 0.901 9 C -0.191 4.191 10 N -0.549 5.549 11 Si 0.819 3.181 12 H -0.180 1.180 13 H -0.197 1.197 14 H -0.200 1.200 15 C 0.068 3.932 16 H 0.084 0.916 17 C -0.065 4.065 18 N -0.328 5.328 19 C 0.012 3.988 20 C -0.130 4.130 21 C -0.203 4.203 22 N -0.175 5.175 23 N -0.097 5.097 24 N -0.099 5.099 25 H 0.307 0.693 26 C -0.182 4.182 27 C -0.237 4.237 28 C -0.181 4.181 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.084 0.916 37 H 0.151 0.849 38 H 0.089 0.911 39 H 0.145 0.855 40 H 0.228 0.772 41 H 0.139 0.861 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.135 0.865 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.884 -27.417 -2.661 28.393 hybrid contribution -0.515 0.241 0.970 1.125 sum -7.399 -27.177 -1.691 28.217 Atomic orbital electron populations 1.21925 0.77541 1.04764 1.02109 1.47464 1.07853 1.03772 1.72254 1.19896 0.87103 0.85384 0.75100 1.90645 1.15686 1.87408 1.51418 1.23329 1.02575 0.95551 1.05656 1.85508 1.12822 0.97373 1.96975 1.23222 0.94575 0.92767 1.58615 0.90147 1.26115 0.97570 1.01654 0.93754 1.70194 1.14111 1.22341 1.48228 0.84928 0.78272 0.76814 0.78097 1.17951 1.19748 1.20034 1.20664 0.96414 0.82320 0.93827 0.91603 1.22261 1.03745 0.93907 0.86610 1.60356 1.29733 1.40980 1.01742 1.20501 1.04848 0.91531 0.81960 1.22577 0.86546 1.04933 0.98979 1.23935 1.03217 0.99051 0.94108 1.75070 0.99919 1.21301 1.21228 1.78244 1.12339 1.08882 1.10188 1.45158 1.13658 1.32886 1.18199 0.69300 1.22542 0.98272 1.01146 0.96252 1.23004 0.99343 1.03639 0.97675 1.23012 1.02304 0.90475 1.02329 0.92084 0.91740 0.87620 0.88178 0.88171 0.92057 0.87662 0.91604 0.84918 0.91059 0.85490 0.77224 0.86092 0.91080 0.88497 0.86503 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 9.28 127.77 1.19 2.49 16 2 N -0.58 -14.05 2.49 -822.60 -2.04 -16.09 16 3 C 0.54 20.04 7.69 87.66 0.67 20.71 16 4 O -0.57 -26.41 15.20 -3.03 -0.05 -26.46 16 5 C -0.12 -4.96 4.78 71.24 0.34 -4.62 16 6 S -0.15 -8.81 20.57 -56.49 -1.16 -9.97 16 7 C -0.54 -31.93 9.50 67.96 0.65 -31.29 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 C 0.01 0.79 5.49 84.86 0.47 1.26 16 10 N -0.91 -57.30 13.22 21.65 0.29 -57.02 16 11 Si 1.00 44.73 29.55 68.60 2.03 46.76 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 15 C 0.17 3.20 2.46 44.99 0.11 3.31 16 16 H 0.07 1.72 6.71 -2.38 -0.02 1.71 16 17 C 0.06 0.66 4.67 86.30 0.40 1.06 16 18 N -0.70 -9.61 6.21 -517.92 -3.22 -12.83 16 19 C 0.14 1.14 6.25 85.56 0.53 1.68 16 20 C 0.01 0.08 6.82 41.36 0.28 0.36 16 21 C -0.04 -0.93 11.99 83.73 1.00 0.08 16 22 N -0.31 -8.94 12.41 -58.25 -0.72 -9.66 16 23 N -0.12 -3.14 13.38 37.02 0.50 -2.64 16 24 N -0.38 -6.62 6.98 -47.79 -0.33 -6.95 16 25 H 0.46 4.64 8.96 -219.96 -1.97 2.67 16 26 C -0.16 -2.41 5.17 -10.79 -0.06 -2.46 16 27 C -0.20 -3.62 10.18 30.62 0.31 -3.31 16 28 C -0.14 -1.55 9.88 30.62 0.30 -1.24 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.21 6.66 -2.39 -0.02 1.20 16 31 H 0.11 1.00 6.31 -2.39 -0.02 0.99 16 32 H 0.10 3.89 7.41 -2.39 -0.02 3.87 16 33 H 0.10 3.82 8.11 -2.40 -0.02 3.80 16 34 H 0.27 15.73 8.31 -92.71 -0.77 14.95 16 35 H 0.11 0.64 6.74 -2.39 -0.02 0.63 16 36 H 0.07 0.43 7.79 -2.39 -0.02 0.41 16 37 H 0.33 6.10 8.72 -89.70 -0.78 5.32 16 38 H 0.07 0.24 8.14 -2.38 -0.02 0.22 16 39 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.21 3.13 8.06 -2.91 -0.02 3.11 16 41 H 0.12 1.51 7.69 -2.39 -0.02 1.49 16 42 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 43 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.10 0.94 7.96 -2.39 -0.02 0.92 16 Total: -1.00 -87.84 391.53 -0.24 -88.07 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -1.72 Total: 18.77 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 6.21 Total: -11.98 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -5.54 Total: -105.20 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.05 Total: -26.46 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.97 kcal Total: -87.84 -0.24 -88.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576730326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.620 kcal (2) G-P(sol) polarization free energy of solvation -87.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds