Wall clock time and date at job start Tue Mar 31 2020 22:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 119.99833 * 2 1 4 4 O 1.21282 * 120.00056 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00185 * 359.97438 * 3 2 1 6 6 S 1.80998 * 109.47012 * 180.02562 * 5 3 2 7 7 C 1.76205 * 99.99900 * 179.97438 * 6 5 3 8 8 H 1.07997 * 120.00127 * 0.02562 * 7 6 5 9 9 C 1.38798 * 119.99993 * 179.97438 * 7 6 5 10 10 N 1.31629 * 120.00025 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00043 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46803 * 90.00141 * 11 9 7 13 13 H 1.48498 * 109.47420 * 210.00220 * 11 9 7 14 14 H 1.48495 * 109.46883 * 330.00378 * 11 9 7 15 15 C 1.46494 * 120.00199 * 179.97438 * 2 1 3 16 16 C 1.53099 * 109.52641 * 59.67724 * 15 2 1 17 17 C 1.53034 * 109.29509 * 182.43578 * 16 15 2 18 18 N 1.46847 * 109.51345 * 59.18740 * 17 16 15 19 19 C 1.46898 * 110.99897 * 174.16738 * 18 17 16 20 20 C 1.50704 * 109.46923 * 169.99458 * 19 18 17 21 21 C 1.35352 * 126.90743 * 95.00572 * 20 19 18 22 22 N 1.33772 * 106.49411 * 179.97438 * 21 20 19 23 23 N 1.28626 * 108.88772 * 359.97438 * 22 21 20 24 24 N 1.28722 * 110.17850 * 359.76246 * 23 22 21 25 25 H 0.96996 * 125.86880 * 180.24525 * 24 23 22 26 26 C 1.46854 * 111.19790 * 298.26320 * 18 17 16 27 27 C 1.53039 * 109.52227 * 61.74204 * 26 18 17 28 28 H 1.09012 * 109.47282 * 270.00123 * 1 2 3 29 29 H 1.08994 * 109.47196 * 29.99815 * 1 2 3 30 30 H 1.09001 * 109.47244 * 150.00506 * 1 2 3 31 31 H 1.08999 * 109.46702 * 299.99828 * 5 3 2 32 32 H 1.08996 * 109.47077 * 60.00427 * 5 3 2 33 33 H 0.97000 * 119.99959 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.57838 * 179.84262 * 15 2 1 35 35 H 1.09007 * 109.48839 * 62.49221 * 16 15 2 36 36 H 1.09009 * 109.50682 * 302.39007 * 16 15 2 37 37 H 1.09002 * 109.46271 * 299.17460 * 17 16 15 38 38 H 1.08994 * 109.46242 * 179.19760 * 17 16 15 39 39 H 1.08992 * 109.47195 * 289.99926 * 19 18 17 40 40 H 1.09001 * 109.47336 * 50.00240 * 19 18 17 41 41 H 1.07998 * 126.75534 * 359.97186 * 21 20 19 42 42 H 1.08993 * 109.46229 * 181.76227 * 26 18 17 43 43 H 1.09008 * 109.45803 * 301.73838 * 26 18 17 44 44 H 1.08994 * 109.50227 * 60.75933 * 27 26 18 45 45 H 1.08998 * 109.50241 * 180.83988 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4723 -0.0006 6 16 2.5615 3.8480 -0.0012 7 6 1.4414 5.2082 -0.0026 8 1 0.3762 5.0305 -0.0024 9 6 1.9281 6.5081 -0.0028 10 7 3.2265 6.7246 -0.0026 11 14 0.7407 7.9501 -0.0036 12 1 0.4257 8.3326 1.3964 13 1 1.3621 9.1028 -0.7038 14 1 -0.5098 7.5612 -0.7037 15 6 2.1975 -1.2686 0.0006 16 6 1.8225 -2.0766 -1.2446 17 6 2.5437 -3.4259 -1.2081 18 7 2.1568 -4.1561 0.0058 19 6 2.7217 -5.5122 0.0068 20 6 2.5151 -6.1413 1.3606 21 6 1.4989 -6.9542 1.7326 22 7 1.7174 -7.2739 3.0131 23 7 2.7975 -6.6976 3.4076 24 7 3.3116 -6.0123 2.4468 25 1 4.1282 -5.4910 2.4941 26 6 2.5495 -3.4215 1.2153 27 6 1.8284 -2.0721 1.2507 28 1 -0.3634 0.0000 1.0278 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7590 2.5298 -0.8909 32 1 0.7584 2.5303 0.8892 33 1 3.5666 7.6331 -0.0031 34 1 3.2695 -1.0714 -0.0023 35 1 2.1217 -1.5281 -2.1378 36 1 0.7449 -2.2403 -1.2614 37 1 3.6213 -3.2617 -1.2053 38 1 2.2675 -4.0092 -2.0864 39 1 2.2235 -6.1138 -0.7533 40 1 3.7884 -5.4616 -0.2112 41 1 0.6738 -7.2806 1.1169 42 1 2.2777 -4.0019 2.0969 43 1 3.6271 -3.2573 1.2066 44 1 0.7511 -2.2357 1.2732 45 1 2.1314 -1.5209 2.1409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576731655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:18 Heat of formation + Delta-G solvation = 71.877716 kcal Electronic energy + Delta-G solvation = -26784.797033 eV Core-core repulsion = 22966.049721 eV Total energy + Delta-G solvation = -3818.747312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.79366 -40.24722 -38.73053 -35.89539 -33.92117 -33.31998 -32.45297 -31.50549 -31.04597 -29.04795 -27.21128 -26.35298 -25.49758 -23.78628 -23.43810 -23.21128 -21.98917 -20.14029 -19.21277 -18.62780 -17.68207 -17.21893 -16.74033 -16.17484 -15.83193 -15.47905 -15.38356 -15.16890 -14.82700 -14.54868 -14.31380 -14.15776 -13.63187 -13.49042 -13.24003 -13.13613 -12.92305 -12.63624 -12.52619 -12.28972 -12.06997 -11.95585 -11.68874 -11.56510 -11.32476 -11.08905 -11.06359 -11.04879 -10.86976 -10.82758 -10.71910 -9.82778 -9.73767 -9.39556 -9.08934 -8.87708 -8.55780 -8.25832 -6.53117 -6.24097 -3.94912 1.05102 2.13480 2.25858 2.87253 2.99669 3.20507 3.23723 3.28327 3.37305 3.56728 3.87078 4.13883 4.17997 4.37190 4.44755 4.53970 4.64893 4.77258 4.89400 4.90428 4.94189 4.98608 5.04030 5.11076 5.16355 5.19643 5.26893 5.33272 5.36824 5.42452 5.54360 5.58564 5.67934 5.69609 5.75691 5.84722 5.92258 6.06768 6.10674 6.30877 6.41770 6.50287 6.63542 7.49517 7.57338 8.01538 8.32794 8.50877 9.21275 10.83313 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029488 B = 0.001944 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.321845 B =14397.997490 C =14518.013157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.619 5.619 3 C 0.534 3.466 4 O -0.519 6.519 5 C -0.149 4.149 6 S -0.063 6.063 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.073 3.927 10 N -0.868 5.868 11 Si 0.919 3.081 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.140 3.860 16 C -0.126 4.126 17 C 0.060 3.940 18 N -0.531 5.531 19 C 0.126 3.874 20 C -0.010 4.010 21 C -0.028 4.028 22 N -0.267 5.267 23 N -0.076 5.076 24 N -0.391 5.391 25 H 0.446 0.554 26 C 0.051 3.949 27 C -0.122 4.122 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.268 0.732 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.052 0.948 41 H 0.192 0.808 42 H 0.074 0.926 43 H 0.036 0.964 44 H 0.076 0.924 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.784 -26.577 -2.034 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.354 5.354 3 C 0.322 3.678 4 O -0.393 6.393 5 C -0.300 4.300 6 S 0.164 5.836 7 C -0.683 4.683 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.036 3.964 16 C -0.164 4.164 17 C -0.068 4.068 18 N -0.257 5.257 19 C -0.003 4.003 20 C -0.143 4.143 21 C -0.186 4.186 22 N -0.134 5.134 23 N -0.057 5.057 24 N -0.113 5.113 25 H 0.292 0.708 26 C -0.077 4.077 27 C -0.161 4.161 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.128 0.872 40 H 0.070 0.930 41 H 0.209 0.791 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.095 0.905 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.333 -26.991 -0.558 27.097 hybrid contribution -0.988 1.719 -1.026 2.233 sum -3.321 -25.271 -1.585 25.538 Atomic orbital electron populations 1.21757 0.79774 1.03178 1.01792 1.47866 1.06802 1.05220 1.75514 1.20379 0.87925 0.84625 0.74835 1.90678 1.13807 1.86754 1.48091 1.23553 1.04532 0.97162 1.04746 1.85384 1.08136 0.93406 1.96713 1.22853 0.94291 0.92175 1.58960 0.90933 1.24997 0.95688 0.98396 0.94529 1.70017 1.11746 1.21668 1.46855 0.86166 0.80261 0.80695 0.78371 1.20257 1.20743 1.19677 1.21011 0.98387 0.82893 0.94062 1.21952 1.01763 0.94270 0.98441 1.22085 0.98020 0.94631 0.92046 1.62141 1.59557 1.01194 1.02811 1.20622 0.99132 0.90207 0.90365 1.22095 0.95236 1.04593 0.92425 1.23447 1.00704 1.00829 0.93620 1.75150 1.08322 1.18613 1.11308 1.78342 1.06634 1.07421 1.13272 1.45295 1.22026 1.35558 1.08406 0.70791 1.22204 0.97620 0.95038 0.92837 1.21905 1.01719 0.93993 0.98485 0.92806 0.90648 0.91101 0.89214 0.89268 0.92183 0.88384 0.90570 0.90416 0.94141 0.89796 0.87189 0.93034 0.79054 0.90766 0.94622 0.90515 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.26 59.85 0.55 1.34 16 2 N -0.62 -8.26 2.77 -173.80 -0.48 -8.75 16 3 C 0.53 9.86 7.69 -10.99 -0.08 9.78 16 4 O -0.52 -11.52 15.19 5.56 0.08 -11.44 16 5 C -0.15 -2.99 4.71 36.01 0.17 -2.82 16 6 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 7 C -0.53 -15.10 9.50 30.94 0.29 -14.81 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 10 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 11 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 15 C 0.14 1.56 2.59 -67.82 -0.18 1.39 16 16 C -0.13 -1.06 5.39 -26.66 -0.14 -1.21 16 17 C 0.06 0.38 5.43 -3.84 -0.02 0.36 16 18 N -0.53 -3.32 4.80 -236.11 -1.13 -4.46 16 19 C 0.13 0.55 5.85 -4.98 -0.03 0.52 16 20 C -0.01 -0.06 5.20 -82.09 -0.43 -0.49 16 21 C -0.03 -0.21 11.99 -17.74 -0.21 -0.43 16 22 N -0.27 -2.84 12.41 30.24 0.38 -2.47 16 23 N -0.08 -0.76 13.38 60.35 0.81 0.05 16 24 N -0.39 -2.56 5.79 33.54 0.19 -2.37 16 25 H 0.45 1.68 8.96 -190.40 -1.71 -0.03 16 26 C 0.05 0.38 4.92 -3.83 -0.02 0.37 16 27 C -0.12 -1.15 5.41 -26.65 -0.14 -1.30 16 28 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 29 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 30 H 0.07 0.56 6.37 -51.93 -0.33 0.23 16 31 H 0.09 1.66 7.40 -51.92 -0.38 1.27 16 32 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.10 1.34 6.91 -51.93 -0.36 0.98 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.62 6.57 -51.92 -0.34 0.28 16 37 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.40 8.12 -51.93 -0.42 -0.02 16 39 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.05 0.18 8.08 -51.93 -0.42 -0.24 16 41 H 0.19 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.07 0.59 5.81 -51.93 -0.30 0.28 16 43 H 0.04 0.26 8.14 -51.92 -0.42 -0.17 16 44 H 0.08 0.71 7.60 -51.93 -0.39 0.32 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -36.15 375.83 -9.24 -45.39 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -7.92 Total: -3.37 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.33 Total: -5.31 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.50 Total: -43.26 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.15 -9.24 -45.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576731655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.272 kcal (2) G-P(sol) polarization free energy of solvation -36.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds