Wall clock time and date at job start Tue Mar 31 2020 22:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00135 * 2 1 4 4 O 1.20822 * 119.99704 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99852 * 180.27736 * 3 2 1 6 6 C 1.53972 * 113.58375 * 278.95083 * 5 3 2 7 7 C 1.52950 * 86.71546 * 220.75351 * 6 5 3 8 8 C 1.52771 * 88.14933 * 24.80382 * 7 6 5 9 9 C 1.53470 * 115.62922 * 142.46210 * 7 6 5 10 10 N 1.48373 * 104.36433 * 106.26728 * 9 7 6 11 11 C 1.34776 * 127.75310 * 218.65921 * 10 9 7 12 12 O 1.21279 * 119.99829 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00315 * 180.02562 * 11 10 9 14 14 C 1.52999 * 109.47175 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47175 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99820 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00261 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00324 * 179.97438 * 17 15 14 19 19 Si 1.86809 * 119.99800 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46702 * 90.00081 * 19 17 15 21 21 H 1.48499 * 109.47034 * 209.99783 * 19 17 15 22 22 H 1.48493 * 109.47176 * 330.00252 * 19 17 15 23 23 C 1.48233 * 104.49652 * 38.68072 * 10 9 7 24 24 C 1.53363 * 115.57880 * 267.08362 * 7 6 5 25 25 H 1.09000 * 110.41939 * 349.00307 * 24 7 6 26 26 C 1.50705 * 110.41902 * 111.45875 * 24 7 6 27 27 O 1.20823 * 119.99902 * 84.95491 * 26 24 7 28 28 O 1.34225 * 119.99796 * 264.96307 * 26 24 7 29 29 H 1.08996 * 109.46932 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46882 * 300.00114 * 1 2 3 31 31 H 1.08999 * 109.47222 * 60.00058 * 1 2 3 32 32 H 1.08998 * 112.82929 * 50.05592 * 5 3 2 33 33 H 1.09002 * 113.66234 * 335.19552 * 6 5 3 34 34 H 1.09000 * 113.65877 * 106.25103 * 6 5 3 35 35 H 1.08997 * 113.66676 * 220.72928 * 8 7 6 36 36 H 1.08997 * 113.75208 * 89.67999 * 8 7 6 37 37 H 1.09005 * 110.45133 * 224.98590 * 9 7 6 38 38 H 1.08996 * 110.45130 * 347.54322 * 9 7 6 39 39 H 1.08996 * 109.46841 * 299.99631 * 13 11 10 40 40 H 1.08999 * 109.47292 * 59.99891 * 13 11 10 41 41 H 1.09005 * 109.46758 * 299.99774 * 14 13 11 42 42 H 1.08999 * 109.47055 * 59.99800 * 14 13 11 43 43 H 0.97000 * 120.00006 * 179.97438 * 18 17 15 44 44 H 1.09002 * 110.39081 * 202.19611 * 23 10 9 45 45 H 1.08993 * 110.49855 * 79.84081 * 23 10 9 46 46 H 0.96701 * 116.99545 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0063 6 6 4.1990 1.0847 1.3845 7 6 5.1651 2.2069 1.0014 8 6 4.1078 2.7158 0.0231 9 6 5.5422 3.1731 2.1325 10 7 6.9361 2.8043 2.4823 11 6 7.4944 2.7569 3.7081 12 8 6.8345 3.0378 4.6861 13 6 8.9388 2.3562 3.8634 14 6 9.3194 2.3841 5.3450 15 6 10.7636 1.9828 5.5003 16 1 11.3511 1.7323 4.6294 17 6 11.3349 1.9352 6.7542 18 7 12.5951 1.5845 6.8899 19 14 10.3188 2.3691 8.2606 20 1 9.6633 1.1442 8.7849 21 1 11.2037 2.9431 9.3059 22 1 9.2820 3.3647 7.8883 23 6 7.5772 2.5000 1.1808 24 6 6.4891 1.7550 0.3731 25 1 6.6105 0.6767 0.4762 26 6 6.5458 2.1551 -1.0787 27 8 6.9217 3.2615 -1.3862 28 8 6.1785 1.2825 -2.0302 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0190 0.6545 -0.7798 33 1 3.5324 1.3432 2.2073 34 1 4.6819 0.1165 1.5167 35 1 4.5180 3.0485 -0.9304 36 1 3.4149 3.4347 0.4603 37 1 5.4974 4.2047 1.7830 38 1 4.8841 3.0314 2.9897 39 1 9.0807 1.3495 3.4704 40 1 9.5705 3.0535 3.3131 41 1 9.1775 3.3911 5.7376 42 1 8.6877 1.6871 5.8956 43 1 12.9971 1.5514 7.7720 44 1 8.4473 1.8599 1.3265 45 1 7.8644 3.4203 0.6724 46 1 6.2315 1.5849 -2.9472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593820359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:21 Heat of formation + Delta-G solvation = -185.939523 kcal Electronic energy + Delta-G solvation = -30073.371669 eV Core-core repulsion = 25736.106190 eV Total energy + Delta-G solvation = -4337.265479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.12281 -40.72637 -39.68191 -38.70001 -36.92620 -36.56993 -35.68412 -33.52082 -31.49953 -31.09444 -29.47538 -28.12448 -26.53133 -26.27889 -24.94086 -24.41860 -21.97530 -21.14683 -20.64766 -19.56227 -18.55242 -18.41811 -18.12545 -17.26334 -17.17714 -17.05879 -16.69475 -16.45724 -16.07289 -15.46182 -15.10821 -14.85211 -14.49518 -14.30224 -14.05778 -13.72741 -13.50546 -13.37787 -13.11422 -12.87953 -12.68791 -12.60351 -12.48748 -12.32524 -12.13893 -11.87121 -11.76160 -11.55965 -11.35687 -11.26451 -11.21171 -10.99246 -10.94303 -10.73478 -10.62944 -10.18399 -10.06562 -9.79865 -9.32197 -9.18937 -8.70432 -8.51386 -6.03808 -4.02789 1.73768 1.77049 2.29215 2.43455 2.98284 3.12281 3.37464 3.44301 3.55128 3.76584 3.78543 3.86910 4.06001 4.20549 4.49811 4.50264 4.67085 4.70193 4.76203 4.78245 4.84396 4.97624 5.08506 5.12525 5.15533 5.25838 5.31528 5.33351 5.36700 5.45444 5.56830 5.62236 5.64664 5.78202 5.97185 5.98494 6.05481 6.08145 6.22122 6.64817 7.33806 7.33906 7.41154 7.46482 7.63817 7.78173 8.44915 8.55204 8.98817 9.59115 11.08909 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.002590 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.323489 B =10807.198138 C =11931.630997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.505 6.505 5 C -0.112 4.112 6 C -0.100 4.100 7 C -0.085 4.085 8 C -0.107 4.107 9 C 0.120 3.880 10 N -0.630 5.630 11 C 0.535 3.465 12 O -0.533 6.533 13 C -0.118 4.118 14 C 0.001 3.999 15 C -0.525 4.525 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.903 5.903 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.261 1.261 23 C 0.113 3.887 24 C -0.081 4.081 25 H 0.122 0.878 26 C 0.494 3.506 27 O -0.504 6.504 28 O -0.515 6.515 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.024 0.976 42 H 0.019 0.981 43 H 0.263 0.737 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.447 -3.881 -21.456 30.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.315 3.685 4 O -0.393 6.393 5 C -0.131 4.131 6 C -0.137 4.137 7 C -0.086 4.086 8 C -0.144 4.144 9 C -0.003 4.003 10 N -0.367 5.367 11 C 0.327 3.673 12 O -0.408 6.408 13 C -0.157 4.157 14 C -0.037 4.037 15 C -0.563 4.563 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.542 5.542 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.185 1.185 23 C -0.011 4.011 24 C -0.101 4.101 25 H 0.140 0.860 26 C 0.335 3.665 27 O -0.391 6.391 28 O -0.327 6.327 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.152 0.848 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.042 0.958 42 H 0.038 0.962 43 H 0.073 0.927 44 H 0.116 0.884 45 H 0.110 0.890 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -21.744 -3.283 -20.306 29.932 hybrid contribution -0.630 0.347 -0.038 0.720 sum -22.374 -2.936 -20.344 30.383 Atomic orbital electron populations 1.23294 0.76282 1.03821 1.02591 1.86532 1.23466 1.33418 1.83875 1.23591 0.91671 0.81332 0.71922 1.90674 1.66992 1.36448 1.45150 1.22694 0.87363 1.00882 1.02174 1.22957 0.96775 0.99474 0.94527 1.21955 0.92228 0.97678 0.96729 1.23008 0.96892 0.94955 0.99561 1.22095 0.84613 0.97325 0.96277 1.49169 1.11969 1.69801 1.05722 1.21302 0.90589 0.75587 0.79840 1.90676 1.64471 1.48700 1.37000 1.21686 0.88784 1.02259 1.03015 1.19390 0.96934 0.97844 0.89507 1.21089 0.94261 1.46364 0.94565 0.90903 1.24968 0.94782 0.94417 0.99052 1.69910 1.12149 1.48471 1.23645 0.86801 0.80551 0.79615 0.82621 1.20233 1.21443 1.18523 1.22384 0.94439 1.00763 0.83472 1.21742 0.97019 1.04148 0.87167 0.85980 1.22919 0.72562 0.82435 0.88554 1.90763 1.43015 1.22129 1.83209 1.84534 1.80062 1.47401 1.20695 0.87982 0.91805 0.91901 0.84849 0.88384 0.88831 0.90279 0.87200 0.90474 0.89098 0.89534 0.89469 0.95772 0.96219 0.92704 0.88439 0.88967 0.72875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.99 10.57 -39.26 -0.41 -3.40 16 3 C 0.47 4.34 7.48 36.00 0.27 4.61 16 4 O -0.51 -5.98 15.65 -18.75 -0.29 -6.28 16 5 C -0.11 -0.80 4.05 -90.77 -0.37 -1.17 16 6 C -0.10 -0.74 6.87 -26.25 -0.18 -0.92 16 7 C -0.08 -0.70 1.13 -154.23 -0.17 -0.88 16 8 C -0.11 -0.84 6.25 -26.34 -0.16 -1.01 16 9 C 0.12 1.34 6.45 -2.77 -0.02 1.32 16 10 N -0.63 -8.46 3.33 -169.46 -0.56 -9.02 16 11 C 0.54 9.63 7.91 -10.99 -0.09 9.54 16 12 O -0.53 -11.66 16.26 5.56 0.09 -11.57 16 13 C -0.12 -2.24 4.62 -27.88 -0.13 -2.36 16 14 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 15 C -0.52 -14.83 9.66 -34.44 -0.33 -15.17 16 16 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 18 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 19 Si 0.88 22.45 27.47 -169.99 -4.67 17.78 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 23 C 0.11 1.16 6.43 -2.23 -0.01 1.15 16 24 C -0.08 -0.64 3.16 -90.72 -0.29 -0.93 16 25 H 0.12 0.77 7.77 -51.93 -0.40 0.36 16 26 C 0.49 3.91 5.11 36.01 0.18 4.09 16 27 O -0.50 -5.52 16.29 -18.75 -0.31 -5.83 16 28 O -0.51 -2.65 12.81 -39.24 -0.50 -3.15 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.13 0.76 7.52 -51.93 -0.39 0.37 16 33 H 0.10 0.77 7.93 -51.93 -0.41 0.36 16 34 H 0.09 0.60 7.88 -51.93 -0.41 0.19 16 35 H 0.08 0.63 6.06 -51.93 -0.31 0.32 16 36 H 0.11 0.97 7.44 -51.93 -0.39 0.58 16 37 H 0.08 0.84 8.12 -51.93 -0.42 0.41 16 38 H 0.09 1.10 7.60 -51.93 -0.39 0.70 16 39 H 0.09 1.48 7.95 -51.93 -0.41 1.07 16 40 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.02 0.62 7.15 -51.93 -0.37 0.25 16 42 H 0.02 0.50 7.53 -51.93 -0.39 0.10 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.10 0.91 7.31 -51.93 -0.38 0.53 16 45 H 0.09 1.00 6.91 -51.93 -0.36 0.64 16 46 H 0.41 0.60 9.10 45.56 0.41 1.02 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -37.69 380.68 -6.48 -44.17 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -5.91 Total: -2.83 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.43 Total: 1.42 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.21 Total: -36.04 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -1.43 Total: -30.24 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.69 -6.48 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593820359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.770 kcal (2) G-P(sol) polarization free energy of solvation -37.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds