Wall clock time and date at job start Tue Mar 31 2020 22:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00135 * 2 1 4 4 O 1.20822 * 119.99704 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99852 * 180.27736 * 3 2 1 6 6 C 1.53972 * 113.58375 * 278.95083 * 5 3 2 7 7 C 1.52950 * 86.71546 * 220.75351 * 6 5 3 8 8 C 1.52771 * 88.14933 * 24.80382 * 7 6 5 9 9 C 1.53470 * 115.62922 * 142.46210 * 7 6 5 10 10 N 1.48373 * 104.36433 * 106.26728 * 9 7 6 11 11 C 1.34776 * 127.75310 * 218.65921 * 10 9 7 12 12 O 1.21279 * 119.99829 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00315 * 180.02562 * 11 10 9 14 14 C 1.52999 * 109.47175 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47175 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99820 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00261 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00324 * 179.97438 * 17 15 14 19 19 Si 1.86809 * 119.99800 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46702 * 90.00081 * 19 17 15 21 21 H 1.48499 * 109.47034 * 209.99783 * 19 17 15 22 22 H 1.48493 * 109.47176 * 330.00252 * 19 17 15 23 23 C 1.48233 * 104.49652 * 38.68072 * 10 9 7 24 24 C 1.53363 * 115.57880 * 267.08362 * 7 6 5 25 25 H 1.09000 * 110.41939 * 349.00307 * 24 7 6 26 26 C 1.50705 * 110.41902 * 111.45875 * 24 7 6 27 27 O 1.20823 * 119.99902 * 84.95491 * 26 24 7 28 28 O 1.34225 * 119.99796 * 264.96307 * 26 24 7 29 29 H 1.08996 * 109.46932 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46882 * 300.00114 * 1 2 3 31 31 H 1.08999 * 109.47222 * 60.00058 * 1 2 3 32 32 H 1.08998 * 112.82929 * 50.05592 * 5 3 2 33 33 H 1.09002 * 113.66234 * 335.19552 * 6 5 3 34 34 H 1.09000 * 113.65877 * 106.25103 * 6 5 3 35 35 H 1.08997 * 113.66676 * 220.72928 * 8 7 6 36 36 H 1.08997 * 113.75208 * 89.67999 * 8 7 6 37 37 H 1.09005 * 110.45133 * 224.98590 * 9 7 6 38 38 H 1.08996 * 110.45130 * 347.54322 * 9 7 6 39 39 H 1.08996 * 109.46841 * 299.99631 * 13 11 10 40 40 H 1.08999 * 109.47292 * 59.99891 * 13 11 10 41 41 H 1.09005 * 109.46758 * 299.99774 * 14 13 11 42 42 H 1.08999 * 109.47055 * 59.99800 * 14 13 11 43 43 H 0.97000 * 120.00006 * 179.97438 * 18 17 15 44 44 H 1.09002 * 110.39081 * 202.19611 * 23 10 9 45 45 H 1.08993 * 110.49855 * 79.84081 * 23 10 9 46 46 H 0.96701 * 116.99545 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0063 6 6 4.1990 1.0847 1.3845 7 6 5.1651 2.2069 1.0014 8 6 4.1078 2.7158 0.0231 9 6 5.5422 3.1731 2.1325 10 7 6.9361 2.8043 2.4823 11 6 7.4944 2.7569 3.7081 12 8 6.8345 3.0378 4.6861 13 6 8.9388 2.3562 3.8634 14 6 9.3194 2.3841 5.3450 15 6 10.7636 1.9828 5.5003 16 1 11.3511 1.7323 4.6294 17 6 11.3349 1.9352 6.7542 18 7 12.5951 1.5845 6.8899 19 14 10.3188 2.3691 8.2606 20 1 9.6633 1.1442 8.7849 21 1 11.2037 2.9431 9.3059 22 1 9.2820 3.3647 7.8883 23 6 7.5772 2.5000 1.1808 24 6 6.4891 1.7550 0.3731 25 1 6.6105 0.6767 0.4762 26 6 6.5458 2.1551 -1.0787 27 8 6.9217 3.2615 -1.3862 28 8 6.1785 1.2825 -2.0302 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0190 0.6545 -0.7798 33 1 3.5324 1.3432 2.2073 34 1 4.6819 0.1165 1.5167 35 1 4.5180 3.0485 -0.9304 36 1 3.4149 3.4347 0.4603 37 1 5.4974 4.2047 1.7830 38 1 4.8841 3.0314 2.9897 39 1 9.0807 1.3495 3.4704 40 1 9.5705 3.0535 3.3131 41 1 9.1775 3.3911 5.7376 42 1 8.6877 1.6871 5.8956 43 1 12.9971 1.5514 7.7720 44 1 8.4473 1.8599 1.3265 45 1 7.8644 3.4203 0.6724 46 1 6.2315 1.5849 -2.9472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593820359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:20 Heat of formation + Delta-G solvation = -211.990171 kcal Electronic energy + Delta-G solvation = -30074.501310 eV Core-core repulsion = 25736.106190 eV Total energy + Delta-G solvation = -4338.395120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.82796 -41.41493 -40.64797 -39.69958 -37.66886 -37.17763 -36.60884 -35.54913 -33.35379 -32.08122 -30.34101 -28.94689 -27.73629 -27.13431 -25.95828 -25.26404 -23.04719 -22.46250 -21.42134 -20.58106 -19.58902 -19.09220 -18.92398 -18.79928 -17.88312 -17.81638 -17.71868 -17.34375 -16.92453 -16.62779 -16.35268 -16.20310 -15.48265 -15.39563 -15.13715 -14.76358 -14.44791 -14.41620 -14.18190 -14.00989 -13.90436 -13.50429 -13.48811 -13.24743 -13.06375 -12.94850 -12.87321 -12.48679 -12.46767 -12.25446 -12.06184 -11.97187 -11.91922 -11.81691 -11.75794 -11.61721 -11.40933 -11.37407 -11.32359 -10.81039 -10.76398 -9.83098 -8.29845 -6.32484 1.07910 1.12650 1.34284 1.36732 1.51497 1.59199 1.67941 1.75415 2.18449 2.36349 3.04200 3.05976 3.14072 3.19193 3.43322 3.51474 3.77076 3.92073 4.06139 4.12576 4.20245 4.29626 4.31624 4.36279 4.42056 4.45164 4.50836 4.54818 4.58512 4.65541 4.70193 4.72450 4.82801 4.87781 4.89936 4.96433 5.12481 5.21950 5.35021 5.37272 5.45073 5.61872 5.63287 6.24939 6.42566 6.67212 6.73830 7.00859 7.14962 7.32884 8.85624 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.002590 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.323489 B =10807.198138 C =11931.630997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.100 4.100 6 C -0.097 4.097 7 C -0.077 4.077 8 C -0.105 4.105 9 C 0.115 3.885 10 N -0.623 5.623 11 C 0.538 3.462 12 O -0.581 6.581 13 C -0.111 4.111 14 C 0.005 3.995 15 C -0.527 4.527 16 H 0.052 0.948 17 C 0.014 3.986 18 N -0.943 5.943 19 Si 0.936 3.064 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.263 1.263 23 C 0.106 3.894 24 C -0.075 4.075 25 H 0.150 0.850 26 C 0.504 3.496 27 O -0.538 6.538 28 O -0.503 6.503 29 H 0.130 0.870 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.157 0.843 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.007 0.993 42 H 0.011 0.989 43 H 0.267 0.733 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.677 -5.257 -23.070 32.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.119 4.119 6 C -0.134 4.134 7 C -0.078 4.078 8 C -0.142 4.142 9 C -0.007 4.007 10 N -0.356 5.356 11 C 0.330 3.670 12 O -0.461 6.461 13 C -0.151 4.151 14 C -0.033 4.033 15 C -0.565 4.565 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.583 5.583 19 Si 0.761 3.239 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.187 1.187 23 C -0.016 4.016 24 C -0.095 4.095 25 H 0.168 0.832 26 C 0.347 3.653 27 O -0.428 6.428 28 O -0.317 6.317 29 H 0.148 0.852 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.174 0.826 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.117 0.883 41 H 0.026 0.974 42 H 0.030 0.970 43 H 0.076 0.924 44 H 0.129 0.871 45 H 0.106 0.894 46 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -22.992 -4.693 -22.003 32.168 hybrid contribution -0.279 0.758 0.313 0.866 sum -23.271 -3.936 -21.690 32.054 Atomic orbital electron populations 1.23542 0.75066 1.05671 1.02396 1.86525 1.24751 1.32871 1.83444 1.23959 0.92391 0.81085 0.70921 1.90665 1.67850 1.37506 1.46787 1.22711 0.86125 1.00413 1.02647 1.22969 0.96264 0.99822 0.94392 1.21861 0.92760 0.97450 0.95759 1.22945 0.96475 0.95440 0.99350 1.22248 0.83071 0.98428 0.96964 1.48974 1.13143 1.67994 1.05519 1.20883 0.89941 0.75532 0.80657 1.90655 1.65270 1.51239 1.38940 1.21491 0.90079 1.04078 0.99408 1.19234 0.94442 0.96274 0.93352 1.21407 0.95872 1.45322 0.93862 0.92934 1.25779 0.95774 0.94657 1.02151 1.70018 1.13703 1.50057 1.24562 0.85858 0.79061 0.79592 0.79384 1.19193 1.20540 1.18727 1.22587 0.95698 1.01390 0.81946 1.21699 0.95381 1.05299 0.87075 0.83244 1.22743 0.71786 0.81953 0.88826 1.90770 1.44707 1.23607 1.83718 1.84476 1.79125 1.46362 1.21699 0.85155 0.92314 0.91865 0.82555 0.89195 0.87007 0.89998 0.88450 0.90330 0.90285 0.87366 0.88312 0.97430 0.97037 0.92411 0.87086 0.89358 0.70673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.33 10.57 -51.43 -0.54 -5.87 16 3 C 0.47 7.95 7.48 71.23 0.53 8.48 16 4 O -0.54 -12.44 15.65 21.98 0.34 -12.10 16 5 C -0.10 -1.18 4.05 -10.89 -0.04 -1.22 16 6 C -0.10 -1.20 6.87 30.91 0.21 -0.98 16 7 C -0.08 -1.12 1.13 -52.00 -0.06 -1.18 16 8 C -0.10 -1.48 6.25 30.85 0.19 -1.28 16 9 C 0.12 2.48 6.45 86.18 0.56 3.04 16 10 N -0.62 -15.93 3.33 -808.43 -2.69 -18.62 16 11 C 0.54 19.04 7.91 87.66 0.69 19.73 16 12 O -0.58 -25.61 16.26 -3.03 -0.05 -25.66 16 13 C -0.11 -4.11 4.62 29.85 0.14 -3.97 16 14 C 0.00 0.24 3.33 29.85 0.10 0.34 16 15 C -0.53 -29.97 9.66 25.60 0.25 -29.73 16 16 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 17 C 0.01 0.83 5.47 84.65 0.46 1.30 16 18 N -0.94 -58.60 13.96 21.45 0.30 -58.30 16 19 Si 0.94 46.53 27.47 68.60 1.88 48.42 16 20 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 22 H -0.26 -13.06 6.54 99.48 0.65 -12.41 16 23 C 0.11 1.95 6.43 86.60 0.56 2.51 16 24 C -0.07 -0.96 3.16 -10.86 -0.03 -0.99 16 25 H 0.15 1.18 7.77 -2.39 -0.02 1.16 16 26 C 0.50 6.47 5.11 71.24 0.36 6.84 16 27 O -0.54 -10.71 16.29 21.97 0.36 -10.36 16 28 O -0.50 -3.22 12.81 -51.37 -0.66 -3.87 16 29 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.67 8.13 -2.38 -0.02 0.65 16 31 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 32 H 0.16 1.14 7.52 -2.39 -0.02 1.13 16 33 H 0.09 1.30 7.93 -2.39 -0.02 1.28 16 34 H 0.11 1.01 7.88 -2.39 -0.02 1.00 16 35 H 0.08 1.13 6.06 -2.39 -0.01 1.12 16 36 H 0.10 1.67 7.44 -2.39 -0.02 1.65 16 37 H 0.08 1.68 8.12 -2.38 -0.02 1.66 16 38 H 0.08 1.91 7.60 -2.39 -0.02 1.90 16 39 H 0.11 3.51 7.95 -2.39 -0.02 3.49 16 40 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 41 H 0.01 0.38 7.15 -2.38 -0.02 0.37 16 42 H 0.01 0.57 7.53 -2.39 -0.02 0.55 16 43 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.11 1.76 7.31 -2.39 -0.02 1.74 16 45 H 0.09 1.77 6.91 -2.39 -0.02 1.75 16 46 H 0.43 -0.34 9.10 -74.06 -0.67 -1.01 16 Total: -1.00 -82.70 380.68 4.35 -78.35 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 0.29 Total: 3.66 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 5.12 Total: 4.34 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -2.39 Total: -76.92 kcal Atomic # 8 Polarization: -57.31 SS G_CDS: -0.55 Total: -57.86 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.88 Total: 48.42 kcal Total: -82.70 4.35 -78.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593820359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.635 kcal (2) G-P(sol) polarization free energy of solvation -82.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds