Wall clock time and date at job start Tue Mar 31 2020 22:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46488 * 1 3 3 C 1.46503 * 120.00318 * 2 1 4 4 C 1.53005 * 109.46912 * 266.09703 * 3 2 1 5 5 N 1.46498 * 109.46998 * 179.97438 * 4 3 2 6 6 C 1.35494 * 126.98163 * 269.68448 * 5 4 3 7 7 N 1.30527 * 107.30370 * 179.83553 * 6 5 4 8 8 N 1.28590 * 109.67332 * 0.44256 * 7 6 5 9 9 C 1.30519 * 109.67817 * 359.71679 * 8 7 6 10 10 C 1.34779 * 120.00064 * 179.97438 * 2 1 3 11 11 O 1.21667 * 120.00039 * 179.82303 * 10 2 1 12 12 C 1.46892 * 119.99989 * 359.81733 * 10 2 1 13 13 C 1.36118 * 125.43419 * 339.97218 * 12 10 2 14 14 C 1.41698 * 107.74535 * 180.02562 * 13 12 10 15 15 C 1.40023 * 133.34799 * 179.97438 * 14 13 12 16 16 C 1.36577 * 119.82947 * 180.02562 * 15 14 13 17 17 C 1.38855 * 120.60102 * 0.02562 * 16 15 14 18 18 C 1.37841 * 120.63314 * 0.22162 * 17 16 15 19 19 C 1.39082 * 119.81390 * 359.55575 * 18 17 16 20 20 N 1.37840 * 133.16868 * 180.12754 * 19 18 17 21 21 C 1.36893 * 125.61388 * 0.28397 * 20 19 18 22 22 H 1.08001 * 119.99610 * 217.99289 * 21 20 19 23 23 C 1.39003 * 120.00127 * 37.99725 * 21 20 19 24 24 N 1.31349 * 120.00273 * 18.42903 * 23 21 20 25 25 Si 1.86803 * 120.00141 * 198.43078 * 23 21 20 26 26 H 1.48502 * 109.46840 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47189 * 119.99809 * 25 23 21 28 28 H 1.48504 * 109.47147 * 239.99957 * 25 23 21 29 29 H 1.09007 * 109.47263 * 262.17572 * 1 2 3 30 30 H 1.09006 * 109.47500 * 22.17147 * 1 2 3 31 31 H 1.08996 * 109.47480 * 142.17813 * 1 2 3 32 32 H 1.09001 * 109.46851 * 26.09281 * 3 2 1 33 33 H 1.08990 * 109.47596 * 146.09640 * 3 2 1 34 34 H 1.09001 * 109.47018 * 299.99476 * 4 3 2 35 35 H 1.09003 * 109.46820 * 59.99706 * 4 3 2 36 36 H 1.07998 * 126.34589 * 359.97438 * 6 5 4 37 37 H 1.07997 * 126.35395 * 179.97438 * 9 8 7 38 38 H 1.07993 * 126.13096 * 0.03446 * 13 12 10 39 39 H 1.08002 * 120.08335 * 0.02562 * 15 14 13 40 40 H 1.08001 * 119.69963 * 180.02562 * 16 15 14 41 41 H 1.07999 * 119.67999 * 179.97438 * 17 16 15 42 42 H 1.07997 * 120.09176 * 179.68183 * 18 17 16 43 43 H 0.96998 * 120.00490 * 184.93137 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5375 1.6612 -1.4392 5 7 3.2695 2.9302 -1.4393 6 6 2.7418 4.1756 -1.5191 7 7 3.7354 5.0213 -1.4832 8 7 4.8466 4.3802 -1.3955 9 6 4.6123 3.0966 -1.3654 10 6 2.1388 -1.1672 0.0005 11 8 3.3555 -1.1672 -0.0027 12 6 1.4043 -2.4393 0.0051 13 6 0.1084 -2.6010 0.3889 14 6 -0.2165 -3.9728 0.2457 15 6 -1.3798 -4.7149 0.4833 16 6 -1.3885 -6.0596 0.2447 17 6 -0.2525 -6.7002 -0.2319 18 6 0.9061 -5.9920 -0.4686 19 6 0.9378 -4.6208 -0.2375 20 7 1.9194 -3.6634 -0.3777 21 6 3.1941 -3.8878 -0.8235 22 1 4.0230 -3.3571 -0.3788 23 6 3.4216 -4.7986 -1.8486 24 7 2.4324 -5.1699 -2.6289 25 14 5.1343 -5.4947 -2.1167 26 1 6.0647 -4.9205 -1.1118 27 1 5.0967 -6.9719 -1.9701 28 1 5.6029 -5.1444 -3.4816 29 1 -0.3634 -0.1399 1.0181 30 1 -0.3634 0.9517 -0.3878 31 1 -0.3634 -0.8117 -0.6301 32 1 1.5799 2.0448 0.4520 33 1 3.1177 1.1569 0.5732 34 1 3.1551 0.8851 -1.8912 35 1 1.6171 1.7730 -2.0124 36 1 1.6933 4.4228 -1.5957 37 1 5.3514 2.3123 -1.2953 38 1 -0.5536 -1.8232 0.7395 39 1 -2.2680 -4.2251 0.8544 40 1 -2.2871 -6.6299 0.4283 41 1 -0.2757 -7.7643 -0.4151 42 1 1.7862 -6.5000 -0.8344 43 1 2.5741 -5.8580 -3.2976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594100858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:31 Heat of formation + Delta-G solvation = 130.844196 kcal Electronic energy + Delta-G solvation = -28878.595426 eV Core-core repulsion = 24926.961142 eV Total energy + Delta-G solvation = -3951.634285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.17584 -40.71993 -39.10446 -36.35203 -35.77458 -34.87974 -33.67798 -31.01879 -30.65492 -30.12719 -29.07952 -27.87926 -26.81708 -25.02802 -24.56703 -22.53219 -22.36269 -21.82421 -20.93445 -20.03863 -19.17238 -17.88273 -17.70098 -16.47362 -16.35500 -15.90427 -15.54566 -15.26795 -15.07367 -14.93313 -14.78461 -14.56724 -14.10102 -13.63492 -13.61556 -13.37075 -12.99949 -12.87741 -12.82285 -12.60604 -12.35594 -11.92825 -11.63298 -11.56375 -11.38977 -11.37175 -11.17618 -10.82306 -10.57338 -10.51658 -10.48311 -10.31952 -9.87707 -9.51931 -9.41601 -9.20041 -8.72609 -8.65264 -7.28999 -6.95715 -6.64379 -4.52849 1.68376 1.73674 2.23348 2.67929 2.81578 2.92837 2.98974 2.99858 3.04809 3.11741 3.77020 4.02329 4.28827 4.42234 4.52709 4.60139 4.62281 4.65100 4.90891 5.00315 5.08080 5.12057 5.20413 5.37705 5.48373 5.64543 5.73090 5.77510 5.84764 5.88402 6.02110 6.03659 6.22655 6.42965 6.49182 6.60225 6.71563 6.77329 6.93245 7.00421 7.07816 7.36700 7.44719 7.50782 7.59826 7.86100 8.00446 8.32139 8.52733 8.61397 8.77855 9.21731 10.10572 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012693 B = 0.003441 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.428167 B = 8136.059576 C = 9985.313678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.615 5.615 3 C 0.113 3.887 4 C 0.087 3.913 5 N -0.469 5.469 6 C 0.147 3.853 7 N -0.303 5.303 8 N -0.304 5.304 9 C 0.160 3.840 10 C 0.592 3.408 11 O -0.532 6.532 12 C -0.027 4.027 13 C -0.220 4.220 14 C -0.124 4.124 15 C -0.093 4.093 16 C -0.154 4.154 17 C -0.153 4.153 18 C -0.049 4.049 19 C 0.084 3.916 20 N -0.227 5.227 21 C -0.339 4.339 22 H 0.122 0.878 23 C 0.052 3.948 24 N -0.818 5.818 25 Si 0.926 3.074 26 H -0.259 1.259 27 H -0.271 1.271 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.216 0.784 37 H 0.219 0.781 38 H 0.140 0.860 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 6.598 2.232 9.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.350 5.350 3 C -0.012 4.012 4 C -0.038 4.038 5 N -0.160 5.160 6 C -0.141 4.141 7 N -0.142 5.142 8 N -0.143 5.143 9 C -0.128 4.128 10 C 0.384 3.616 11 O -0.408 6.408 12 C -0.144 4.144 13 C -0.247 4.247 14 C -0.129 4.129 15 C -0.112 4.112 16 C -0.173 4.173 17 C -0.174 4.174 18 C -0.069 4.069 19 C -0.030 4.030 20 N 0.113 4.887 21 C -0.468 4.468 22 H 0.139 0.861 23 C -0.161 4.161 24 N -0.447 5.447 25 Si 0.750 3.250 26 H -0.183 1.183 27 H -0.196 1.196 28 H -0.199 1.199 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.233 0.767 37 H 0.235 0.765 38 H 0.157 0.843 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.130 0.870 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.353 7.776 1.871 9.106 hybrid contribution -0.206 -1.767 -0.436 1.831 sum -4.559 6.009 1.435 7.678 Atomic orbital electron populations 1.22399 0.78952 1.03298 1.02494 1.47360 1.07133 1.04395 1.76158 1.21548 0.98986 0.85961 0.94685 1.22530 0.98224 0.82746 1.00263 1.46486 1.07837 1.08563 1.53126 1.26513 1.02088 0.80402 1.05118 1.74231 0.94803 1.26929 1.18284 1.74259 1.19373 1.02081 1.18634 1.26662 0.84546 0.97920 1.03692 1.17344 0.86345 0.82560 0.75358 1.90755 1.13458 1.87071 1.49521 1.19435 0.93391 0.86242 1.15337 1.20889 0.94275 0.95657 1.13863 1.17984 0.94249 0.93688 1.06939 1.20022 0.95896 0.93498 1.01746 1.20288 0.97758 0.94533 1.04763 1.20554 0.93295 0.98510 1.05001 1.20119 0.97836 0.91247 0.97678 1.18136 0.89218 0.90699 1.04988 1.39945 1.08509 1.02136 1.38145 1.20200 0.82612 1.26500 1.17473 0.86094 1.25673 1.00374 0.96830 0.93217 1.70027 1.33465 1.25594 1.15642 0.85872 0.81059 0.79060 0.79046 1.18278 1.19599 1.19945 0.92046 0.91843 0.88712 0.89803 0.89238 0.87421 0.88151 0.76709 0.76495 0.84252 0.87846 0.87940 0.87685 0.86951 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 8.71 59.84 0.52 1.27 16 2 N -0.62 -8.34 2.88 -183.05 -0.53 -8.87 16 3 C 0.11 1.20 5.65 -4.04 -0.02 1.18 16 4 C 0.09 0.84 6.50 -4.04 -0.03 0.82 16 5 N -0.47 -4.88 2.75 -119.97 -0.33 -5.21 16 6 C 0.15 1.51 12.74 -89.94 -1.15 0.36 16 7 N -0.30 -4.28 12.21 29.69 0.36 -3.92 16 8 N -0.30 -4.49 12.21 29.69 0.36 -4.13 16 9 C 0.16 1.91 12.74 -89.94 -1.15 0.76 16 10 C 0.59 11.41 7.54 -12.76 -0.10 11.31 16 11 O -0.53 -11.68 14.75 5.22 0.08 -11.61 16 12 C -0.03 -0.58 6.46 -82.25 -0.53 -1.11 16 13 C -0.22 -4.24 8.56 -39.02 -0.33 -4.58 16 14 C -0.12 -2.67 6.16 -106.89 -0.66 -3.32 16 15 C -0.09 -1.73 10.06 -39.51 -0.40 -2.13 16 16 C -0.15 -2.80 9.97 -39.95 -0.40 -3.20 16 17 C -0.15 -3.00 10.02 -39.50 -0.40 -3.40 16 18 C -0.05 -1.12 8.55 -39.41 -0.34 -1.46 16 19 C 0.08 2.03 6.08 -83.83 -0.51 1.52 16 20 N -0.23 -5.67 2.83 -56.08 -0.16 -5.83 16 21 C -0.34 -8.71 9.05 -15.01 -0.14 -8.84 16 22 H 0.12 3.19 6.71 -52.49 -0.35 2.84 16 23 C 0.05 1.26 4.41 -17.47 -0.08 1.18 16 24 N -0.82 -20.52 10.92 55.50 0.61 -19.91 16 25 Si 0.93 18.78 29.59 -169.99 -5.03 13.75 16 26 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 27 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 28 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 29 H 0.06 0.59 7.05 -51.93 -0.37 0.23 16 30 H 0.06 0.45 8.01 -51.93 -0.42 0.03 16 31 H 0.09 1.18 5.66 -51.93 -0.29 0.88 16 32 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 33 H 0.09 1.13 7.54 -51.93 -0.39 0.73 16 34 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.22 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.22 2.05 8.06 -52.49 -0.42 1.63 16 38 H 0.14 2.10 4.75 -52.49 -0.25 1.85 16 39 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.11 2.65 6.43 -52.49 -0.34 2.31 16 43 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -32.40 361.78 -9.80 -42.20 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.92 Total: 7.71 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -5.69 Total: -9.64 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.32 Total: -47.87 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.40 -9.80 -42.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594100858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.047 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds