Wall clock time and date at job start Tue Mar 31 2020 22:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46488 * 1 3 3 C 1.46503 * 120.00318 * 2 1 4 4 C 1.53005 * 109.46912 * 266.09703 * 3 2 1 5 5 N 1.46498 * 109.46998 * 179.97438 * 4 3 2 6 6 C 1.35494 * 126.98163 * 269.68448 * 5 4 3 7 7 N 1.30527 * 107.30370 * 179.83553 * 6 5 4 8 8 N 1.28590 * 109.67332 * 0.44256 * 7 6 5 9 9 C 1.30519 * 109.67817 * 359.71679 * 8 7 6 10 10 C 1.34779 * 120.00064 * 179.97438 * 2 1 3 11 11 O 1.21667 * 120.00039 * 179.82303 * 10 2 1 12 12 C 1.46892 * 119.99989 * 359.81733 * 10 2 1 13 13 C 1.36118 * 125.43419 * 339.97218 * 12 10 2 14 14 C 1.41698 * 107.74535 * 180.02562 * 13 12 10 15 15 C 1.40023 * 133.34799 * 179.97438 * 14 13 12 16 16 C 1.36577 * 119.82947 * 180.02562 * 15 14 13 17 17 C 1.38855 * 120.60102 * 0.02562 * 16 15 14 18 18 C 1.37841 * 120.63314 * 0.22162 * 17 16 15 19 19 C 1.39082 * 119.81390 * 359.55575 * 18 17 16 20 20 N 1.37840 * 133.16868 * 180.12754 * 19 18 17 21 21 C 1.36893 * 125.61388 * 0.28397 * 20 19 18 22 22 H 1.08001 * 119.99610 * 217.99289 * 21 20 19 23 23 C 1.39003 * 120.00127 * 37.99725 * 21 20 19 24 24 N 1.31349 * 120.00273 * 18.42903 * 23 21 20 25 25 Si 1.86803 * 120.00141 * 198.43078 * 23 21 20 26 26 H 1.48502 * 109.46840 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47189 * 119.99809 * 25 23 21 28 28 H 1.48504 * 109.47147 * 239.99957 * 25 23 21 29 29 H 1.09007 * 109.47263 * 262.17572 * 1 2 3 30 30 H 1.09006 * 109.47500 * 22.17147 * 1 2 3 31 31 H 1.08996 * 109.47480 * 142.17813 * 1 2 3 32 32 H 1.09001 * 109.46851 * 26.09281 * 3 2 1 33 33 H 1.08990 * 109.47596 * 146.09640 * 3 2 1 34 34 H 1.09001 * 109.47018 * 299.99476 * 4 3 2 35 35 H 1.09003 * 109.46820 * 59.99706 * 4 3 2 36 36 H 1.07998 * 126.34589 * 359.97438 * 6 5 4 37 37 H 1.07997 * 126.35395 * 179.97438 * 9 8 7 38 38 H 1.07993 * 126.13096 * 0.03446 * 13 12 10 39 39 H 1.08002 * 120.08335 * 0.02562 * 15 14 13 40 40 H 1.08001 * 119.69963 * 180.02562 * 16 15 14 41 41 H 1.07999 * 119.67999 * 179.97438 * 17 16 15 42 42 H 1.07997 * 120.09176 * 179.68183 * 18 17 16 43 43 H 0.96998 * 120.00490 * 184.93137 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5375 1.6612 -1.4392 5 7 3.2695 2.9302 -1.4393 6 6 2.7418 4.1756 -1.5191 7 7 3.7354 5.0213 -1.4832 8 7 4.8466 4.3802 -1.3955 9 6 4.6123 3.0966 -1.3654 10 6 2.1388 -1.1672 0.0005 11 8 3.3555 -1.1672 -0.0027 12 6 1.4043 -2.4393 0.0051 13 6 0.1084 -2.6010 0.3889 14 6 -0.2165 -3.9728 0.2457 15 6 -1.3798 -4.7149 0.4833 16 6 -1.3885 -6.0596 0.2447 17 6 -0.2525 -6.7002 -0.2319 18 6 0.9061 -5.9920 -0.4686 19 6 0.9378 -4.6208 -0.2375 20 7 1.9194 -3.6634 -0.3777 21 6 3.1941 -3.8878 -0.8235 22 1 4.0230 -3.3571 -0.3788 23 6 3.4216 -4.7986 -1.8486 24 7 2.4324 -5.1699 -2.6289 25 14 5.1343 -5.4947 -2.1167 26 1 6.0647 -4.9205 -1.1118 27 1 5.0967 -6.9719 -1.9701 28 1 5.6029 -5.1444 -3.4816 29 1 -0.3634 -0.1399 1.0181 30 1 -0.3634 0.9517 -0.3878 31 1 -0.3634 -0.8117 -0.6301 32 1 1.5799 2.0448 0.4520 33 1 3.1177 1.1569 0.5732 34 1 3.1551 0.8851 -1.8912 35 1 1.6171 1.7730 -2.0124 36 1 1.6933 4.4228 -1.5957 37 1 5.3514 2.3123 -1.2953 38 1 -0.5536 -1.8232 0.7395 39 1 -2.2680 -4.2251 0.8544 40 1 -2.2871 -6.6299 0.4283 41 1 -0.2757 -7.7643 -0.4151 42 1 1.7862 -6.5000 -0.8344 43 1 2.5741 -5.8580 -3.2976 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594100858.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:30 Heat of formation + Delta-G solvation = 114.195632 kcal Electronic energy + Delta-G solvation = -28879.317362 eV Core-core repulsion = 24926.961142 eV Total energy + Delta-G solvation = -3952.356221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.07789 -42.26373 -40.46046 -37.67071 -37.15978 -36.03458 -35.27833 -32.56962 -31.57473 -31.27150 -30.66172 -29.27621 -27.85444 -26.70404 -25.71793 -23.80701 -23.28068 -22.85197 -22.42426 -21.58082 -20.55120 -19.48871 -18.56661 -17.76554 -17.62319 -17.22193 -17.01170 -16.51988 -16.35179 -16.24706 -15.85565 -15.70416 -15.25240 -15.05979 -14.87174 -14.61959 -14.58887 -14.21969 -14.00169 -13.82951 -13.66004 -13.58519 -13.07216 -12.95760 -12.59787 -12.52888 -12.38117 -12.31110 -12.10751 -11.95432 -11.42123 -11.40685 -11.39278 -10.93918 -10.89685 -10.45998 -10.33138 -9.77961 -8.98215 -8.61401 -8.28989 -6.37583 0.17231 0.86063 1.10591 1.28329 1.31880 1.33779 1.43507 1.46975 1.88407 1.96104 2.14472 2.44361 2.88279 3.07931 3.39775 3.49169 3.70509 3.72511 3.80706 3.85026 4.17525 4.24539 4.32663 4.35110 4.37210 4.44420 4.57179 4.66203 4.74444 4.83547 4.88013 4.88256 5.02562 5.06405 5.14042 5.16767 5.22614 5.38937 5.47733 5.52690 5.78044 5.91367 5.93282 5.99444 6.15758 6.28556 6.44922 6.59439 6.98237 7.22875 7.49333 7.69904 8.34874 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012693 B = 0.003441 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.428167 B = 8136.059576 C = 9985.313678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.599 5.599 3 C 0.114 3.886 4 C 0.098 3.902 5 N -0.466 5.466 6 C 0.170 3.830 7 N -0.349 5.349 8 N -0.343 5.343 9 C 0.154 3.846 10 C 0.584 3.416 11 O -0.574 6.574 12 C -0.054 4.054 13 C -0.189 4.189 14 C -0.152 4.152 15 C -0.083 4.083 16 C -0.159 4.159 17 C -0.139 4.139 18 C -0.094 4.094 19 C 0.058 3.942 20 N -0.266 5.266 21 C -0.368 4.368 22 H 0.096 0.904 23 C 0.019 3.981 24 N -0.850 5.850 25 Si 0.983 3.017 26 H -0.266 1.266 27 H -0.261 1.261 28 H -0.268 1.268 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.133 0.867 36 H 0.265 0.735 37 H 0.230 0.770 38 H 0.188 0.812 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.129 0.871 42 H 0.088 0.912 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.149 7.645 2.984 13.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.332 5.332 3 C -0.010 4.010 4 C -0.026 4.026 5 N -0.157 5.157 6 C -0.119 4.119 7 N -0.187 5.187 8 N -0.182 5.182 9 C -0.135 4.135 10 C 0.375 3.625 11 O -0.454 6.454 12 C -0.169 4.169 13 C -0.216 4.216 14 C -0.157 4.157 15 C -0.101 4.101 16 C -0.177 4.177 17 C -0.159 4.159 18 C -0.114 4.114 19 C -0.056 4.056 20 N 0.072 4.928 21 C -0.496 4.496 22 H 0.114 0.886 23 C -0.190 4.190 24 N -0.481 5.481 25 Si 0.804 3.196 26 H -0.190 1.190 27 H -0.185 1.185 28 H -0.193 1.193 29 H 0.097 0.903 30 H 0.131 0.869 31 H 0.094 0.906 32 H 0.145 0.855 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.151 0.849 36 H 0.280 0.720 37 H 0.246 0.754 38 H 0.204 0.796 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.147 0.853 42 H 0.107 0.893 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.423 8.876 2.627 12.516 hybrid contribution 0.790 -2.021 -0.554 2.240 sum -7.633 6.855 2.073 10.467 Atomic orbital electron populations 1.22648 0.76428 1.05457 1.03487 1.47343 1.08621 1.03461 1.73759 1.21729 0.98659 0.85342 0.95268 1.22417 0.98747 0.81681 0.99767 1.46504 1.07250 1.08962 1.52950 1.27371 1.03273 0.79366 1.01847 1.74148 0.95552 1.28394 1.20635 1.74186 1.20507 1.03280 1.20186 1.26940 0.85789 0.97559 1.03220 1.17382 0.85936 0.83654 0.75518 1.90727 1.15206 1.87810 1.51681 1.20187 0.94897 0.86769 1.15057 1.21486 0.93559 0.95919 1.10605 1.18520 0.94582 0.94725 1.07834 1.20514 0.96026 0.93753 0.99817 1.20755 0.98461 0.94851 1.03669 1.20971 0.92660 0.99705 1.02587 1.20173 0.98711 0.91534 1.00988 1.18701 0.90246 0.91440 1.05261 1.40100 1.08633 1.03466 1.40609 1.19998 0.83143 1.27990 1.18490 0.88622 1.26321 1.03342 0.96756 0.92543 1.70085 1.34955 1.26606 1.16435 0.85057 0.77133 0.78736 0.78675 1.19022 1.18503 1.19344 0.90301 0.86903 0.90592 0.85542 0.91736 0.90257 0.84882 0.71980 0.75408 0.79554 0.83621 0.83703 0.85268 0.89348 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 8.71 127.77 1.11 2.09 16 2 N -0.60 -14.88 2.88 -851.28 -2.45 -17.33 16 3 C 0.11 2.13 5.65 86.38 0.49 2.62 16 4 C 0.10 1.68 6.50 86.38 0.56 2.24 16 5 N -0.47 -8.79 2.75 -533.46 -1.47 -10.26 16 6 C 0.17 2.97 12.74 180.11 2.30 5.27 16 7 N -0.35 -9.50 12.21 -59.99 -0.73 -10.23 16 8 N -0.34 -10.19 12.21 -59.99 -0.73 -10.92 16 9 C 0.15 3.68 12.74 180.11 2.30 5.98 16 10 C 0.58 22.87 7.54 86.51 0.65 23.53 16 11 O -0.57 -26.77 14.75 -4.24 -0.06 -26.84 16 12 C -0.05 -2.38 6.46 39.91 0.26 -2.12 16 13 C -0.19 -6.95 8.56 22.63 0.19 -6.76 16 14 C -0.15 -6.32 6.16 -21.33 -0.13 -6.45 16 15 C -0.08 -2.78 10.06 22.31 0.22 -2.56 16 16 C -0.16 -5.19 9.97 22.03 0.22 -4.97 16 17 C -0.14 -5.29 10.02 22.32 0.22 -5.07 16 18 C -0.09 -4.44 8.55 22.38 0.19 -4.25 16 19 C 0.06 2.88 6.08 39.06 0.24 3.12 16 20 N -0.27 -13.96 2.83 -331.35 -0.94 -14.90 16 21 C -0.37 -20.37 9.05 84.09 0.76 -19.61 16 22 H 0.10 5.56 6.71 -2.91 -0.02 5.54 16 23 C 0.02 1.01 4.41 84.95 0.37 1.38 16 24 N -0.85 -45.18 10.92 21.67 0.24 -44.95 16 25 Si 0.98 41.05 29.59 68.60 2.03 43.08 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 28 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 29 H 0.08 1.07 7.05 -2.38 -0.02 1.05 16 30 H 0.11 0.81 8.01 -2.38 -0.02 0.79 16 31 H 0.08 1.59 5.66 -2.39 -0.01 1.58 16 32 H 0.13 1.37 8.04 -2.39 -0.02 1.35 16 33 H 0.06 1.59 7.54 -2.39 -0.02 1.57 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.26 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.23 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.19 4.81 4.75 -2.91 -0.01 4.79 16 39 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 40 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 41 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.09 4.47 6.43 -2.91 -0.02 4.46 16 43 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -80.06 361.78 6.90 -73.16 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 1.06 Total: 24.73 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 9.96 Total: -5.56 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -6.08 Total: -108.58 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.06 Total: -26.84 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -80.06 6.90 -73.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594100858.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.359 kcal (2) G-P(sol) polarization free energy of solvation -80.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds