Wall clock time and date at job start Tue Mar 31 2020 22:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 119.99934 * 2 1 4 4 H 1.48500 * 109.46923 * 239.99357 * 3 2 1 5 5 H 1.48502 * 109.47349 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47195 * 119.99925 * 3 2 1 7 7 C 1.38955 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00240 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.34769 * 120.00144 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99718 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00295 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47268 * 185.56540 * 12 10 9 14 14 C 1.46902 * 111.00232 * 75.76167 * 13 12 10 15 15 C 1.52992 * 109.47009 * 189.99846 * 14 13 12 16 16 N 1.46498 * 109.47088 * 180.02562 * 15 14 13 17 17 C 1.34782 * 119.99892 * 180.02562 * 16 15 14 18 18 O 1.21274 * 120.00330 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99505 * 180.02562 * 17 16 15 20 20 H 1.08995 * 115.55228 * 34.33220 * 19 17 16 21 21 C 1.53003 * 117.49758 * 248.61657 * 19 17 16 22 22 C 1.53003 * 60.00134 * 252.51383 * 21 19 17 23 23 H 1.08996 * 117.51258 * 107.48118 * 22 21 19 24 24 C 1.50697 * 117.49942 * 252.50774 * 22 21 19 25 25 O 1.20831 * 119.99757 * 68.62671 * 24 22 21 26 26 O 1.34228 * 120.00356 * 248.62545 * 24 22 21 27 27 C 1.46897 * 110.99964 * 199.72144 * 13 12 10 28 28 C 1.52997 * 117.50174 * 137.69098 * 27 13 12 29 29 C 1.52998 * 117.49850 * 69.02804 * 27 13 12 30 30 H 0.96994 * 119.99853 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99738 * 0.27570 * 9 7 2 32 32 H 1.09007 * 109.46759 * 305.55855 * 12 10 9 33 33 H 1.08994 * 109.46897 * 65.56112 * 12 10 9 34 34 H 1.09000 * 109.47084 * 310.00220 * 14 13 12 35 35 H 1.08997 * 109.46359 * 70.00269 * 14 13 12 36 36 H 1.09005 * 109.47635 * 300.00560 * 15 14 13 37 37 H 1.09003 * 109.47341 * 60.00515 * 15 14 13 38 38 H 0.96995 * 120.00147 * 0.02562 * 16 15 14 39 39 H 1.08997 * 117.49578 * 0.02562 * 21 19 17 40 40 H 1.09003 * 117.49533 * 145.02282 * 21 19 17 41 41 H 0.96700 * 117.00206 * 180.02562 * 26 24 22 42 42 H 1.08998 * 115.54882 * 283.36221 * 27 13 12 43 43 H 1.08998 * 117.49652 * 359.97438 * 28 27 13 44 44 H 1.09000 * 117.50175 * 145.02072 * 28 27 13 45 45 H 1.09004 * 117.49940 * 214.97590 * 29 27 13 46 46 H 1.08994 * 117.50332 * 0.02562 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0030 12 6 1.2437 -4.8630 0.0010 13 7 2.1926 -5.9763 0.1367 14 6 2.6753 -6.0911 1.5193 15 6 3.8359 -7.0865 1.5733 16 7 4.3170 -7.2014 2.9522 17 6 5.3422 -8.0271 3.2416 18 8 5.8662 -8.6752 2.3607 19 6 5.8367 -8.1457 4.6603 20 1 5.0730 -8.0587 5.4331 21 6 7.2261 -7.5867 4.9732 22 6 7.0034 -9.0996 4.9243 23 1 7.4131 -9.6416 4.0720 24 6 7.0092 -9.8465 6.2332 25 8 6.1139 -9.6804 7.0274 26 8 8.0088 -10.6963 6.5167 27 6 1.5925 -7.2377 -0.3179 28 6 2.4627 -8.1695 -1.1637 29 6 1.3178 -7.3900 -1.8153 30 1 -0.4849 0.8400 -0.0004 31 1 0.3533 -2.3907 -0.0039 32 1 0.5435 -4.8786 0.8363 33 1 0.6950 -4.9653 -0.9352 34 1 3.0164 -5.1160 1.8672 35 1 1.8655 -6.4421 2.1588 36 1 3.4948 -8.0616 1.2253 37 1 4.6457 -6.7354 0.9337 38 1 3.8977 -6.6834 3.6569 39 1 7.7824 -7.1328 4.1531 40 1 7.3767 -7.1315 5.9522 41 1 7.9689 -11.1526 7.3683 42 1 0.8860 -7.6980 0.3727 43 1 3.4803 -7.8464 -1.3831 44 1 2.3285 -9.2429 -1.0297 45 1 0.4308 -7.9510 -2.1098 46 1 1.5826 -6.5545 -2.4632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:01 Heat of formation + Delta-G solvation = -128.279846 kcal Electronic energy + Delta-G solvation = -28645.084809 eV Core-core repulsion = 24342.612392 eV Total energy + Delta-G solvation = -4302.472417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76420 -40.80986 -40.37674 -38.98063 -37.69075 -36.84573 -36.24584 -35.91696 -34.68220 -33.23105 -30.88130 -28.19803 -26.94994 -25.94740 -25.01397 -23.47092 -23.17297 -22.00762 -21.60425 -21.08900 -20.68275 -19.82112 -19.48938 -18.52833 -17.84129 -17.58320 -17.15896 -16.89709 -16.75105 -16.67857 -16.44841 -16.02245 -15.80143 -15.60351 -15.37933 -14.99693 -14.67684 -14.50563 -14.13579 -13.92160 -13.68592 -13.49361 -13.36289 -13.03701 -12.92170 -12.66267 -12.52671 -12.42319 -12.39742 -12.26730 -12.12280 -11.97327 -11.83977 -11.70126 -11.45804 -11.34955 -11.13889 -11.01175 -10.28188 -10.16314 -9.97604 -9.25822 -8.44062 -5.92239 0.91621 1.35554 1.40475 1.42425 1.52796 1.67532 2.09449 2.16073 2.30826 2.64390 2.71596 2.92922 3.23094 3.37458 3.42355 3.59781 3.73728 3.83641 3.99454 4.06464 4.08746 4.13072 4.28047 4.28905 4.34831 4.45432 4.50990 4.56966 4.59401 4.77910 4.79318 4.84771 4.87942 4.95921 4.97787 5.13830 5.30634 5.36540 5.42994 5.51901 5.83957 6.06626 6.22739 6.43506 6.63990 6.92989 7.11364 7.16212 7.60482 8.16743 8.73000 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011097 B = 0.002232 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.670278 B =12541.703230 C =14471.764593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.990 3.010 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.329 4.329 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.442 3.558 11 O -0.614 6.614 12 C 0.065 3.935 13 N -0.508 5.508 14 C 0.062 3.938 15 C 0.141 3.859 16 N -0.711 5.711 17 C 0.543 3.457 18 O -0.576 6.576 19 C -0.160 4.160 20 H 0.152 0.848 21 C -0.097 4.097 22 C -0.145 4.145 23 H 0.144 0.856 24 C 0.522 3.478 25 O -0.543 6.543 26 O -0.505 6.505 27 C -0.007 4.007 28 C -0.159 4.159 29 C -0.163 4.163 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.415 0.585 39 H 0.121 0.879 40 H 0.135 0.865 41 H 0.433 0.567 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.121 0.879 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.925 -19.481 10.442 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.814 3.186 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.459 4.459 8 H 0.096 0.904 9 N -0.213 5.213 10 C 0.229 3.771 11 O -0.500 6.500 12 C -0.066 4.066 13 N -0.232 5.232 14 C -0.067 4.067 15 C 0.017 3.983 16 N -0.363 5.363 17 C 0.330 3.670 18 O -0.456 6.456 19 C -0.181 4.181 20 H 0.170 0.830 21 C -0.134 4.134 22 C -0.165 4.165 23 H 0.162 0.838 24 C 0.365 3.635 25 O -0.433 6.433 26 O -0.319 6.319 27 C -0.115 4.115 28 C -0.197 4.197 29 C -0.200 4.200 30 H 0.086 0.914 31 H 0.229 0.771 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.252 0.748 39 H 0.140 0.860 40 H 0.153 0.847 41 H 0.295 0.705 42 H 0.124 0.876 43 H 0.098 0.902 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.125 -19.431 9.349 22.710 hybrid contribution -1.051 0.804 1.110 1.727 sum 6.074 -18.627 10.459 22.209 Atomic orbital electron populations 1.69660 1.06734 1.29229 1.50524 1.25994 0.96530 1.02281 0.96512 0.85032 0.77777 0.76906 0.78890 1.19937 1.19593 1.19661 1.19579 0.92590 0.84000 1.49737 0.90440 1.41932 1.09269 1.04653 1.65485 1.20820 0.88318 0.85863 0.82124 1.90502 1.15692 1.87845 1.55927 1.21653 0.93033 0.88054 1.03866 1.61007 1.37412 1.02404 1.22426 1.22072 0.96527 0.99191 0.88871 1.21034 0.95942 0.99197 0.82159 1.45735 1.34864 1.44797 1.10864 1.19818 0.79149 0.78519 0.89545 1.90701 1.58468 1.46599 1.49865 1.22249 0.95012 1.05505 0.95289 0.83023 1.23266 0.93693 0.90398 1.06056 1.21615 1.04785 0.94529 0.95528 0.83803 1.22119 0.78151 0.76364 0.86832 1.90732 1.37855 1.64289 1.50469 1.84465 1.47330 1.54446 1.45624 1.22572 1.01930 0.92148 0.94860 1.23072 0.96144 0.97674 1.02772 1.23085 1.00834 1.02734 0.93353 0.91392 0.77076 0.90862 0.87427 0.91915 0.92133 0.90736 0.93488 0.74806 0.86029 0.84696 0.70481 0.87585 0.90175 0.86717 0.86111 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.13 13.05 21.66 0.28 -48.84 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 3 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.33 -18.46 9.68 84.04 0.81 -17.64 16 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 9 N -0.58 -28.95 5.29 -306.98 -1.62 -30.57 16 10 C 0.44 20.50 7.33 87.66 0.64 21.14 16 11 O -0.61 -33.42 15.09 -3.09 -0.05 -33.47 16 12 C 0.06 2.15 5.45 85.56 0.47 2.62 16 13 N -0.51 -15.62 4.15 -875.55 -3.64 -19.26 16 14 C 0.06 1.73 4.72 86.30 0.41 2.13 16 15 C 0.14 3.81 5.50 86.38 0.48 4.29 16 16 N -0.71 -15.80 5.56 -463.06 -2.57 -18.37 16 17 C 0.54 12.92 7.61 87.66 0.67 13.59 16 18 O -0.58 -18.11 16.26 -3.01 -0.05 -18.15 16 19 C -0.16 -2.73 5.70 -11.54 -0.07 -2.79 16 20 H 0.15 2.25 7.67 -2.39 -0.02 2.23 16 21 C -0.10 -1.28 9.94 30.60 0.30 -0.98 16 22 C -0.15 -2.36 5.81 -11.54 -0.07 -2.43 16 23 H 0.14 2.57 7.67 -2.39 -0.02 2.55 16 24 C 0.52 8.48 8.11 71.24 0.58 9.06 16 25 O -0.54 -11.66 17.02 21.95 0.37 -11.29 16 26 O -0.50 -5.63 13.42 -51.40 -0.69 -6.32 16 27 C -0.01 -0.16 4.25 44.91 0.19 0.03 16 28 C -0.16 -3.51 9.33 30.62 0.29 -3.22 16 29 C -0.16 -3.49 9.73 30.62 0.30 -3.19 16 30 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.40 18.89 7.90 -92.70 -0.73 18.16 16 32 H 0.07 2.11 8.00 -2.38 -0.02 2.09 16 33 H 0.11 3.25 7.35 -2.39 -0.02 3.24 16 34 H 0.06 2.16 6.89 -2.39 -0.02 2.14 16 35 H 0.06 1.36 8.12 -2.39 -0.02 1.34 16 36 H 0.07 1.95 6.62 -2.38 -0.02 1.94 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.42 7.02 8.47 -92.71 -0.79 6.23 16 39 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.43 0.90 9.10 -74.06 -0.67 0.22 16 42 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.08 2.11 8.12 -2.39 -0.02 2.09 16 Total: -1.00 -77.39 397.74 -1.61 -79.01 By element: Atomic # 1 Polarization: 41.39 SS G_CDS: -1.14 Total: 40.25 kcal Atomic # 6 Polarization: 16.89 SS G_CDS: 5.46 Total: 22.35 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -7.55 Total: -117.04 kcal Atomic # 8 Polarization: -68.82 SS G_CDS: -0.41 Total: -69.23 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -77.39 -1.61 -79.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.275 kcal (2) G-P(sol) polarization free energy of solvation -77.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds