Wall clock time and date at job start Tue Mar 31 2020 23:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86792 * 120.00314 * 2 1 4 4 H 1.48497 * 109.47343 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47023 * 299.99936 * 3 2 1 6 6 H 1.48496 * 109.47204 * 59.99452 * 3 2 1 7 7 C 1.38953 * 119.99281 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99109 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00499 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99736 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00355 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99638 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47189 * 180.02562 * 12 10 9 14 14 C 1.46898 * 111.00055 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46910 * 180.02562 * 14 13 12 16 16 H 1.09005 * 112.90690 * 316.25006 * 15 14 13 17 17 C 1.53777 * 113.61650 * 87.50192 * 15 14 13 18 18 C 1.53777 * 87.08340 * 139.97847 * 17 15 14 19 19 H 1.08998 * 113.69185 * 220.00672 * 18 17 15 20 20 N 1.46506 * 113.61496 * 89.11716 * 18 17 15 21 21 C 1.34777 * 120.00117 * 107.50168 * 20 18 17 22 22 O 1.21276 * 119.99792 * 359.97438 * 21 20 18 23 23 C 1.50700 * 119.99585 * 180.27891 * 21 20 18 24 24 H 1.08997 * 115.55341 * 345.56128 * 23 21 20 25 25 C 1.53005 * 117.49243 * 199.89175 * 23 21 20 26 26 C 1.52995 * 59.99975 * 252.50791 * 25 23 21 27 27 H 1.08998 * 117.50732 * 252.50664 * 26 25 23 28 28 C 1.50711 * 117.49461 * 107.49159 * 26 25 23 29 29 O 1.20816 * 119.99993 * 22.32284 * 28 26 25 30 30 O 1.34224 * 119.99849 * 202.32396 * 28 26 25 31 31 C 1.53773 * 87.08052 * 334.57037 * 18 17 15 32 32 H 0.96999 * 119.99958 * 0.02562 * 1 2 3 33 33 H 0.96999 * 120.00280 * 0.02562 * 9 7 2 34 34 H 1.09006 * 109.46885 * 60.00741 * 12 10 9 35 35 H 1.08996 * 109.47691 * 300.00566 * 12 10 9 36 36 H 1.00902 * 110.99924 * 303.95440 * 13 12 10 37 37 H 1.08993 * 109.47271 * 59.99831 * 14 13 12 38 38 H 1.09001 * 109.46701 * 299.99864 * 14 13 12 39 39 H 1.09000 * 113.61637 * 25.42603 * 17 15 14 40 40 H 1.09003 * 113.61787 * 254.53089 * 17 15 14 41 41 H 0.97006 * 119.99693 * 287.50627 * 20 18 17 42 42 H 1.08992 * 117.50414 * 0.02562 * 25 23 21 43 43 H 1.09011 * 117.49314 * 145.02212 * 25 23 21 44 44 H 0.96699 * 117.00119 * 179.97438 * 30 28 26 45 45 H 1.09003 * 113.61959 * 139.98237 * 31 18 17 46 46 H 1.09003 * 113.61106 * 270.87789 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2035 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5580 0.0011 12 6 1.2436 -4.8630 0.0022 13 7 2.1982 -5.9796 0.0027 14 6 1.4978 -7.2709 0.0026 15 6 2.5227 -8.4069 0.0038 16 1 3.3459 -8.2363 -0.6900 17 6 2.9799 -8.8226 1.4119 18 6 2.9310 -10.2764 0.9132 19 1 2.5308 -10.9775 1.6456 20 7 4.1875 -10.7342 0.3148 21 6 4.9676 -11.6128 0.9751 22 8 4.6296 -12.0240 2.0648 23 6 6.2631 -12.0788 0.3624 24 1 6.3855 -11.8633 -0.6991 25 6 6.8678 -13.3801 0.8934 26 6 7.5151 -12.0381 1.2409 27 1 8.4614 -11.7955 0.7576 28 6 7.3583 -11.5349 2.6528 29 8 7.1156 -12.3103 3.5470 30 8 7.4883 -10.2253 2.9168 31 6 1.8933 -9.8046 -0.1189 32 1 -0.4850 0.8400 -0.0004 33 1 0.3533 -2.3907 0.0016 34 1 0.6167 -4.9209 -0.8877 35 1 0.6172 -4.9205 0.8923 36 1 2.8331 -5.9129 -0.7787 37 1 0.8732 -7.3454 -0.8875 38 1 0.8726 -7.3451 0.8925 39 1 2.2495 -8.6033 2.1907 40 1 3.9839 -8.4809 1.6637 41 1 4.4580 -10.4049 -0.5566 42 1 6.3284 -13.8993 1.6855 43 1 7.3884 -14.0205 0.1812 44 1 7.3788 -9.9501 3.8373 45 1 2.0198 -10.2556 -1.1031 46 1 0.8656 -9.8539 0.2413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:15 Heat of formation + Delta-G solvation = -114.251278 kcal Electronic energy + Delta-G solvation = -28345.920866 eV Core-core repulsion = 24044.056773 eV Total energy + Delta-G solvation = -4301.864093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.18940 -40.20084 -38.95230 -38.18707 -36.78067 -36.04481 -35.24173 -33.89509 -33.29464 -31.22061 -28.67865 -26.43774 -25.90396 -25.69095 -24.73294 -23.55261 -22.01125 -21.31825 -20.54278 -19.65600 -19.07120 -18.74118 -17.88714 -17.82829 -16.70697 -16.40486 -16.05617 -15.88512 -15.53853 -15.22991 -14.92834 -14.78119 -14.62603 -14.34619 -14.07274 -13.97922 -13.68781 -13.28473 -13.21161 -12.79181 -12.52966 -12.45203 -12.28345 -11.81343 -11.75783 -11.56027 -11.50007 -11.41908 -11.25467 -11.06512 -10.99751 -10.80612 -10.62502 -10.36566 -10.34572 -10.24611 -10.21962 -9.52280 -9.32215 -8.44932 -8.03492 -7.95609 -6.42123 -3.82832 1.66712 2.17917 2.48749 2.74455 3.15974 3.26517 3.30180 3.33859 3.90864 4.02798 4.04190 4.07568 4.24015 4.24219 4.30280 4.53274 4.55452 4.68591 4.84661 4.85738 5.08691 5.16601 5.19878 5.25433 5.31859 5.39708 5.51008 5.52086 5.53094 5.57324 5.68190 5.81785 5.97019 5.98173 6.00923 6.04470 6.26134 6.26779 6.38953 7.11757 7.23456 7.55106 7.64214 7.67582 7.84020 8.06455 8.61162 9.17780 9.54328 10.05803 10.75740 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.001756 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.248675 B =15945.066829 C =17010.942368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.667 5.667 14 C 0.068 3.932 15 C -0.104 4.104 16 H 0.090 0.910 17 C -0.134 4.134 18 C 0.114 3.886 19 H 0.101 0.899 20 N -0.702 5.702 21 C 0.536 3.464 22 O -0.528 6.528 23 C -0.169 4.169 24 H 0.137 0.863 25 C -0.112 4.112 26 C -0.134 4.134 27 H 0.150 0.850 28 C 0.506 3.494 29 O -0.494 6.494 30 O -0.512 6.512 31 C -0.140 4.140 32 H 0.271 0.729 33 H 0.392 0.608 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.347 0.653 37 H 0.027 0.973 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.403 0.597 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.414 0.586 45 H 0.072 0.928 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.934 -26.130 -2.717 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.299 5.299 14 C -0.061 4.061 15 C -0.123 4.123 16 H 0.108 0.892 17 C -0.172 4.172 18 C 0.009 3.991 19 H 0.119 0.881 20 N -0.353 5.353 21 C 0.322 3.678 22 O -0.404 6.404 23 C -0.191 4.191 24 H 0.155 0.845 25 C -0.149 4.149 26 C -0.153 4.153 27 H 0.167 0.833 28 C 0.347 3.653 29 O -0.380 6.380 30 O -0.324 6.324 31 C -0.178 4.178 32 H 0.081 0.919 33 H 0.225 0.775 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.167 0.833 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.237 0.763 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.273 0.727 45 H 0.090 0.910 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.425 -26.582 -1.390 27.920 hybrid contribution -0.554 1.438 -0.856 1.763 sum 7.872 -25.143 -2.246 26.442 Atomic orbital electron populations 1.69624 1.05934 1.28037 1.50754 1.25273 0.95652 0.99746 0.97384 0.85792 0.79707 0.81114 0.77689 1.19216 1.20788 1.20748 1.19756 0.93399 0.82238 1.47405 0.87873 1.41876 1.09203 1.04631 1.64429 1.19832 0.88393 0.84746 0.84387 1.90520 1.13775 1.87085 1.55356 1.21674 0.94393 0.91065 1.01110 1.60067 1.18782 0.99911 1.51189 1.21967 0.95092 0.88751 1.00296 1.22560 0.98385 0.93163 0.98193 0.89196 1.23369 1.02904 0.93982 0.96989 1.21942 0.83951 0.96583 0.96590 0.88069 1.45550 1.22114 1.45105 1.22499 1.19565 0.84393 0.78651 0.85183 1.90796 1.72793 1.56627 1.20151 1.22411 0.91395 1.04967 1.00307 0.84510 1.23187 1.00010 0.88851 1.02890 1.21699 0.98683 1.03757 0.91164 0.83276 1.22018 0.72634 0.80174 0.90490 1.90729 1.42756 1.57122 1.47429 1.84481 1.83873 1.26622 1.37445 1.23360 0.99081 0.96111 0.99284 0.91939 0.77471 0.93991 0.89681 0.83350 0.95509 0.90960 0.89029 0.90819 0.76263 0.86117 0.86033 0.72651 0.90963 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 2 C 0.02 0.56 5.50 -17.46 -0.10 0.46 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 9 N -0.56 -14.36 5.29 -10.96 -0.06 -14.41 16 10 C 0.44 10.43 7.82 -10.98 -0.09 10.35 16 11 O -0.58 -15.88 15.78 5.55 0.09 -15.79 16 12 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 13 N -0.67 -10.49 6.13 -115.06 -0.70 -11.20 16 14 C 0.07 0.78 5.52 -3.83 -0.02 0.76 16 15 C -0.10 -0.97 3.78 -89.81 -0.34 -1.31 16 16 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 17 C -0.13 -1.38 7.43 -25.92 -0.19 -1.57 16 18 C 0.11 1.02 4.32 -67.12 -0.29 0.73 16 19 H 0.10 1.05 7.46 -51.93 -0.39 0.67 16 20 N -0.70 -5.57 5.26 -53.02 -0.28 -5.85 16 21 C 0.54 5.25 7.09 -10.99 -0.08 5.17 16 22 O -0.53 -7.41 14.61 4.00 0.06 -7.35 16 23 C -0.17 -1.06 6.19 -91.77 -0.57 -1.63 16 24 H 0.14 0.38 8.14 -51.93 -0.42 -0.04 16 25 C -0.11 -0.67 9.55 -26.73 -0.26 -0.93 16 26 C -0.13 -0.92 6.29 -91.77 -0.58 -1.50 16 27 H 0.15 0.57 8.14 -51.93 -0.42 0.14 16 28 C 0.51 5.34 6.30 36.01 0.23 5.57 16 29 O -0.49 -6.89 16.98 -20.90 -0.35 -7.24 16 30 O -0.51 -4.73 13.42 -39.24 -0.53 -5.26 16 31 C -0.14 -1.02 7.39 -25.93 -0.19 -1.21 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.35 5.60 8.43 -39.29 -0.33 5.27 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.82 7.84 -51.93 -0.41 0.41 16 39 H 0.09 0.96 7.89 -51.93 -0.41 0.55 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.40 2.18 8.70 -40.82 -0.36 1.82 16 42 H 0.12 1.06 7.52 -51.93 -0.39 0.67 16 43 H 0.12 0.32 8.14 -51.92 -0.42 -0.10 16 44 H 0.41 2.46 9.10 45.56 0.41 2.87 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -37.51 396.12 -8.68 -46.19 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -5.92 Total: 15.50 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -2.64 Total: 7.26 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.32 Total: -55.31 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.74 Total: -35.65 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.51 -8.68 -46.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.064 kcal (2) G-P(sol) polarization free energy of solvation -37.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds