Wall clock time and date at job start Tue Mar 31 2020 23:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86792 * 120.00314 * 2 1 4 4 H 1.48497 * 109.47343 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47023 * 299.99936 * 3 2 1 6 6 H 1.48496 * 109.47204 * 59.99452 * 3 2 1 7 7 C 1.38953 * 119.99281 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99109 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00499 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99736 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00355 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99638 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47189 * 180.02562 * 12 10 9 14 14 C 1.46898 * 111.00055 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46910 * 180.02562 * 14 13 12 16 16 H 1.09005 * 112.90690 * 316.25006 * 15 14 13 17 17 C 1.53777 * 113.61650 * 87.50192 * 15 14 13 18 18 C 1.53777 * 87.08340 * 139.97847 * 17 15 14 19 19 H 1.08998 * 113.69185 * 220.00672 * 18 17 15 20 20 N 1.46506 * 113.61496 * 89.11716 * 18 17 15 21 21 C 1.34777 * 120.00117 * 107.50168 * 20 18 17 22 22 O 1.21276 * 119.99792 * 359.97438 * 21 20 18 23 23 C 1.50700 * 119.99585 * 180.27891 * 21 20 18 24 24 H 1.08997 * 115.55341 * 345.56128 * 23 21 20 25 25 C 1.53005 * 117.49243 * 199.89175 * 23 21 20 26 26 C 1.52995 * 59.99975 * 252.50791 * 25 23 21 27 27 H 1.08998 * 117.50732 * 252.50664 * 26 25 23 28 28 C 1.50711 * 117.49461 * 107.49159 * 26 25 23 29 29 O 1.20816 * 119.99993 * 22.32284 * 28 26 25 30 30 O 1.34224 * 119.99849 * 202.32396 * 28 26 25 31 31 C 1.53773 * 87.08052 * 334.57037 * 18 17 15 32 32 H 0.96999 * 119.99958 * 0.02562 * 1 2 3 33 33 H 0.96999 * 120.00280 * 0.02562 * 9 7 2 34 34 H 1.09006 * 109.46885 * 60.00741 * 12 10 9 35 35 H 1.08996 * 109.47691 * 300.00566 * 12 10 9 36 36 H 1.00902 * 110.99924 * 303.95440 * 13 12 10 37 37 H 1.08993 * 109.47271 * 59.99831 * 14 13 12 38 38 H 1.09001 * 109.46701 * 299.99864 * 14 13 12 39 39 H 1.09000 * 113.61637 * 25.42603 * 17 15 14 40 40 H 1.09003 * 113.61787 * 254.53089 * 17 15 14 41 41 H 0.97006 * 119.99693 * 287.50627 * 20 18 17 42 42 H 1.08992 * 117.50414 * 0.02562 * 25 23 21 43 43 H 1.09011 * 117.49314 * 145.02212 * 25 23 21 44 44 H 0.96699 * 117.00119 * 179.97438 * 30 28 26 45 45 H 1.09003 * 113.61959 * 139.98237 * 31 18 17 46 46 H 1.09003 * 113.61106 * 270.87789 * 31 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2035 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5580 0.0011 12 6 1.2436 -4.8630 0.0022 13 7 2.1982 -5.9796 0.0027 14 6 1.4978 -7.2709 0.0026 15 6 2.5227 -8.4069 0.0038 16 1 3.3459 -8.2363 -0.6900 17 6 2.9799 -8.8226 1.4119 18 6 2.9310 -10.2764 0.9132 19 1 2.5308 -10.9775 1.6456 20 7 4.1875 -10.7342 0.3148 21 6 4.9676 -11.6128 0.9751 22 8 4.6296 -12.0240 2.0648 23 6 6.2631 -12.0788 0.3624 24 1 6.3855 -11.8633 -0.6991 25 6 6.8678 -13.3801 0.8934 26 6 7.5151 -12.0381 1.2409 27 1 8.4614 -11.7955 0.7576 28 6 7.3583 -11.5349 2.6528 29 8 7.1156 -12.3103 3.5470 30 8 7.4883 -10.2253 2.9168 31 6 1.8933 -9.8046 -0.1189 32 1 -0.4850 0.8400 -0.0004 33 1 0.3533 -2.3907 0.0016 34 1 0.6167 -4.9209 -0.8877 35 1 0.6172 -4.9205 0.8923 36 1 2.8331 -5.9129 -0.7787 37 1 0.8732 -7.3454 -0.8875 38 1 0.8726 -7.3451 0.8925 39 1 2.2495 -8.6033 2.1907 40 1 3.9839 -8.4809 1.6637 41 1 4.4580 -10.4049 -0.5566 42 1 6.3284 -13.8993 1.6855 43 1 7.3884 -14.0205 0.1812 44 1 7.3788 -9.9501 3.8373 45 1 2.0198 -10.2556 -1.1031 46 1 0.8656 -9.8539 0.2413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:14 Heat of formation + Delta-G solvation = -145.168460 kcal Electronic energy + Delta-G solvation = -28347.261536 eV Core-core repulsion = 24044.056773 eV Total energy + Delta-G solvation = -4303.204762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90952 -40.99244 -40.16471 -39.61753 -37.48015 -36.84238 -36.50445 -35.77434 -34.20277 -33.25621 -29.88119 -27.53283 -26.80541 -26.60681 -25.79422 -24.77843 -22.89503 -21.92572 -21.22514 -21.15546 -20.22928 -19.84069 -19.45202 -18.61755 -17.85261 -17.39572 -17.08126 -16.90980 -16.59540 -16.47544 -16.07888 -15.87108 -15.62926 -15.52184 -15.28248 -15.08835 -14.95214 -14.50142 -14.16095 -13.99612 -13.53829 -13.49107 -13.28614 -13.06614 -12.97769 -12.89364 -12.63690 -12.57480 -12.41126 -12.11846 -12.00263 -11.85436 -11.70628 -11.54902 -11.51892 -11.41899 -11.16143 -11.02942 -10.33713 -10.06496 -10.01770 -9.24755 -8.47242 -5.95920 0.94576 1.36417 1.41764 1.43960 1.56034 1.87556 2.05110 2.14256 2.29042 2.76043 2.93672 3.20133 3.47478 3.53984 3.54561 3.59041 3.71666 3.81384 3.90902 4.03105 4.13693 4.32291 4.34285 4.46283 4.53239 4.55447 4.64681 4.69370 4.75449 4.80871 4.85006 4.87673 4.91780 5.04602 5.12442 5.21439 5.28395 5.40800 5.55666 5.64839 5.90992 6.13700 6.46936 6.48858 6.59908 6.90576 7.12379 7.17639 7.56150 8.11444 8.70380 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.001756 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.248675 B =15945.066829 C =17010.942368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.065 3.935 13 N -0.684 5.684 14 C 0.070 3.930 15 C -0.098 4.098 16 H 0.095 0.905 17 C -0.141 4.141 18 C 0.114 3.886 19 H 0.082 0.918 20 N -0.690 5.690 21 C 0.525 3.475 22 O -0.580 6.580 23 C -0.161 4.161 24 H 0.183 0.817 25 C -0.108 4.108 26 C -0.141 4.141 27 H 0.188 0.812 28 C 0.498 3.502 29 O -0.540 6.540 30 O -0.515 6.515 31 C -0.118 4.118 32 H 0.277 0.723 33 H 0.396 0.604 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.344 0.656 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.418 0.582 42 H 0.085 0.915 43 H 0.164 0.836 44 H 0.423 0.577 45 H 0.094 0.906 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.848 -26.582 -5.069 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.316 5.316 14 C -0.059 4.059 15 C -0.117 4.117 16 H 0.113 0.887 17 C -0.180 4.180 18 C 0.009 3.991 19 H 0.101 0.899 20 N -0.341 5.341 21 C 0.312 3.688 22 O -0.460 6.460 23 C -0.182 4.182 24 H 0.200 0.800 25 C -0.145 4.145 26 C -0.160 4.160 27 H 0.205 0.795 28 C 0.342 3.658 29 O -0.430 6.430 30 O -0.328 6.328 31 C -0.156 4.156 32 H 0.087 0.913 33 H 0.230 0.770 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.162 0.838 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.068 0.932 41 H 0.256 0.744 42 H 0.103 0.897 43 H 0.181 0.819 44 H 0.284 0.716 45 H 0.112 0.888 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.310 -27.021 -3.779 28.521 hybrid contribution -0.544 1.573 -0.056 1.665 sum 7.767 -25.448 -3.835 26.881 Atomic orbital electron populations 1.69680 1.06813 1.29231 1.50421 1.26057 0.96578 1.02453 0.96322 0.84858 0.78025 0.77057 0.78324 1.19792 1.19477 1.19718 1.19704 0.92695 0.84063 1.49817 0.90353 1.41951 1.09344 1.04754 1.65099 1.20941 0.88281 0.86235 0.82088 1.90486 1.15897 1.87993 1.56629 1.21528 0.94086 0.88199 1.02941 1.60074 1.19131 1.01053 1.51392 1.22064 0.95560 0.87035 1.01223 1.22521 0.98301 0.93601 0.97253 0.88694 1.23388 1.01432 0.95356 0.97804 1.21855 0.85045 0.95100 0.97148 0.89937 1.45490 1.21496 1.44291 1.22849 1.20305 0.85548 0.78269 0.84651 1.90781 1.74184 1.58489 1.22541 1.22588 0.88847 1.04764 1.02016 0.79951 1.23290 0.99651 0.88918 1.02650 1.22003 1.00528 1.04384 0.89123 0.79487 1.22913 0.71158 0.79905 0.91872 1.90703 1.44981 1.58085 1.49228 1.84477 1.83474 1.26397 1.38478 1.23261 0.98782 0.93845 0.99708 0.91306 0.76969 0.91480 0.88177 0.83770 0.93642 0.90728 0.89646 0.93200 0.74441 0.89658 0.81862 0.71584 0.88771 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.63 13.05 21.66 0.28 -49.35 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -29.50 5.29 -306.98 -1.62 -31.13 16 10 C 0.44 20.76 7.82 87.66 0.69 21.45 16 11 O -0.62 -34.61 15.78 -3.07 -0.05 -34.66 16 12 C 0.06 2.18 6.17 85.56 0.53 2.71 16 13 N -0.68 -20.59 6.13 -517.93 -3.17 -23.76 16 14 C 0.07 1.43 5.52 86.30 0.48 1.91 16 15 C -0.10 -1.64 3.78 -10.27 -0.04 -1.67 16 16 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 17 C -0.14 -2.89 7.43 31.12 0.23 -2.66 16 18 C 0.11 1.95 4.32 45.51 0.20 2.15 16 19 H 0.08 1.76 7.46 -2.39 -0.02 1.74 16 20 N -0.69 -9.98 5.26 -440.05 -2.32 -12.30 16 21 C 0.52 9.98 7.09 87.66 0.62 10.60 16 22 O -0.58 -17.08 14.61 -1.52 -0.02 -17.11 16 23 C -0.16 -1.63 6.19 -11.54 -0.07 -1.70 16 24 H 0.18 0.13 8.14 -2.39 -0.02 0.11 16 25 C -0.11 -1.12 9.55 30.59 0.29 -0.82 16 26 C -0.14 -1.69 6.29 -11.54 -0.07 -1.77 16 27 H 0.19 0.75 8.14 -2.39 -0.02 0.73 16 28 C 0.50 10.79 6.30 71.24 0.45 11.23 16 29 O -0.54 -16.10 16.98 24.06 0.41 -15.70 16 30 O -0.52 -9.81 13.42 -51.36 -0.69 -10.50 16 31 C -0.12 -1.39 7.39 31.12 0.23 -1.16 16 32 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 33 H 0.40 19.29 7.90 -92.71 -0.73 18.55 16 34 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.34 10.72 8.43 -89.69 -0.76 9.96 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 1.52 7.84 -2.39 -0.02 1.50 16 39 H 0.09 1.82 7.89 -2.39 -0.02 1.80 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.42 3.37 8.70 -92.70 -0.81 2.56 16 42 H 0.08 1.56 7.52 -2.39 -0.02 1.54 16 43 H 0.16 0.26 8.14 -2.38 -0.02 0.24 16 44 H 0.42 5.60 9.10 -74.06 -0.67 4.92 16 45 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.11 1.11 8.10 -2.39 -0.02 1.09 16 Total: -1.00 -85.73 396.12 -2.25 -87.98 By element: Atomic # 1 Polarization: 41.67 SS G_CDS: -1.91 Total: 39.77 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 4.81 Total: 21.78 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -6.83 Total: -116.53 kcal Atomic # 8 Polarization: -77.61 SS G_CDS: -0.35 Total: -77.96 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -85.73 -2.25 -87.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.190 kcal (2) G-P(sol) polarization free energy of solvation -85.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds