Wall clock time and date at job start Tue Mar 31 2020 22:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42895 * 109.47386 * 2 1 4 4 C 1.42898 * 114.00246 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47319 * 180.02562 * 4 3 2 6 6 N 1.46509 * 109.46799 * 65.00292 * 5 4 3 7 7 C 1.46498 * 119.99996 * 83.67786 * 6 5 4 8 8 C 1.50697 * 109.47477 * 84.94609 * 7 6 5 9 9 C 1.35170 * 125.61024 * 89.99365 * 8 7 6 10 10 C 1.40306 * 107.12481 * 179.74024 * 9 8 7 11 11 C 1.36635 * 106.70507 * 0.02562 * 10 9 8 12 12 C 1.46470 * 125.99658 * 180.02562 * 11 10 9 13 13 O 1.21622 * 120.00441 * 0.02562 * 12 11 10 14 14 O 1.34907 * 119.99971 * 180.02562 * 12 11 10 15 15 O 1.33915 * 125.60666 * 269.69705 * 8 7 6 16 16 C 1.34772 * 119.99552 * 263.67547 * 6 5 4 17 17 O 1.21275 * 120.00736 * 5.15130 * 16 6 5 18 18 C 1.50706 * 119.99800 * 185.14968 * 16 6 5 19 19 H 1.08998 * 109.47061 * 41.60157 * 18 16 6 20 20 C 1.53000 * 109.47001 * 281.60031 * 18 16 6 21 21 C 1.50699 * 109.47253 * 161.60174 * 18 16 6 22 22 H 1.08001 * 119.99886 * 359.97438 * 21 18 16 23 23 C 1.37876 * 120.00189 * 180.02562 * 21 18 16 24 24 N 1.31516 * 119.99862 * 359.97438 * 23 21 18 25 25 Si 1.86793 * 120.00218 * 179.97438 * 23 21 18 26 26 H 1.48503 * 109.46942 * 60.00034 * 25 23 21 27 27 H 1.48504 * 109.47300 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47247 * 300.00166 * 25 23 21 29 29 H 1.08997 * 109.47014 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46362 * 299.99835 * 1 2 3 31 31 H 1.08992 * 109.46993 * 59.99487 * 1 2 3 32 32 H 1.09002 * 109.46783 * 240.00376 * 2 1 3 33 33 H 1.09002 * 109.47041 * 120.00606 * 2 1 3 34 34 H 1.09002 * 109.47083 * 60.00013 * 4 3 2 35 35 H 1.08999 * 109.47002 * 300.00533 * 4 3 2 36 36 H 1.08998 * 109.47092 * 305.00448 * 5 4 3 37 37 H 1.09001 * 109.47301 * 184.99582 * 5 4 3 38 38 H 1.09004 * 109.47224 * 324.93937 * 7 6 5 39 39 H 1.09005 * 109.47037 * 204.94375 * 7 6 5 40 40 H 1.07997 * 126.43315 * 359.72125 * 9 8 7 41 41 H 1.08004 * 126.64564 * 180.02562 * 10 9 8 42 42 H 0.96705 * 116.99665 * 180.02562 * 14 12 11 43 43 H 1.09003 * 109.47121 * 52.63018 * 20 18 16 44 44 H 1.09004 * 109.47037 * 172.62233 * 20 18 16 45 45 H 1.08993 * 109.47176 * 292.62420 * 20 18 16 46 46 H 0.96996 * 120.00321 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 7 3.3881 3.5598 1.2526 7 6 4.2209 3.4533 2.4532 8 6 5.2604 4.5443 2.4419 9 6 5.1124 5.7780 2.9741 10 6 6.3122 6.4705 2.7517 11 6 7.1426 5.6137 2.0858 12 6 8.5078 5.9075 1.6440 13 8 8.9969 6.9990 1.8644 14 8 9.2229 4.9672 0.9923 15 8 6.4848 4.4491 1.9080 16 6 2.2195 4.2296 1.3002 17 8 1.4861 4.2391 0.3344 18 6 1.8241 4.9667 2.5538 19 1 2.6938 5.4814 2.9623 20 6 1.2905 3.9700 3.5847 21 6 0.7519 5.9740 2.2272 22 1 0.3929 6.0711 1.2132 23 6 0.2298 6.7725 3.2226 24 7 0.6672 6.6547 4.4573 25 14 -1.0988 8.0216 2.8177 26 1 -2.2840 7.3208 2.2613 27 1 -1.4885 8.7479 4.0529 28 1 -0.5806 8.9885 1.8169 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8334 0.9766 -0.8908 35 1 3.8341 0.9763 0.8891 36 1 3.3493 3.4418 -0.8411 37 1 4.9083 3.0254 -0.0898 38 1 4.7142 2.4814 2.4681 39 1 3.5952 3.5568 3.3397 40 1 4.2353 6.1590 3.4759 41 1 6.5360 7.4844 3.0491 42 1 10.1194 5.2074 0.7208 43 1 2.0153 3.1679 3.7236 44 1 1.1277 4.4810 4.5337 45 1 0.3483 3.5512 3.2313 46 1 0.2997 7.2161 5.1577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605635949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:45 Heat of formation + Delta-G solvation = -150.211214 kcal Electronic energy + Delta-G solvation = -30703.781642 eV Core-core repulsion = 26368.065458 eV Total energy + Delta-G solvation = -4335.716184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.70285 -40.05472 -39.29516 -37.64963 -36.35176 -35.26373 -33.93450 -33.04269 -31.94498 -30.64166 -30.44400 -28.60788 -26.72601 -25.20340 -23.65901 -23.34867 -22.64368 -21.68005 -21.30599 -20.53637 -18.71100 -18.49171 -17.69788 -16.84671 -16.62401 -16.43457 -16.08484 -15.84174 -15.57501 -15.24245 -14.99420 -14.45993 -14.37176 -13.81752 -13.59952 -13.44948 -13.17537 -13.05071 -12.83193 -12.77726 -12.53593 -12.28104 -11.84790 -11.84016 -11.81392 -11.68510 -11.30988 -11.18070 -11.11838 -10.99007 -10.83840 -10.70468 -10.62355 -10.23796 -9.98814 -9.96030 -9.43484 -9.00220 -8.71095 -8.51674 -8.30709 -8.27535 -6.05273 -4.06511 0.76834 2.24757 2.34833 2.86573 3.13161 3.36265 3.38853 3.44176 3.60481 3.71827 3.90701 4.46532 4.65035 4.95386 4.97534 5.10939 5.13497 5.24298 5.27731 5.30196 5.41273 5.42256 5.44160 5.48921 5.56988 5.65685 5.78307 5.83234 5.93801 6.02095 6.03358 6.13940 6.19916 6.29244 6.42775 6.59433 6.82502 6.87481 6.93690 7.01660 7.43074 7.43944 7.63914 7.72540 7.92844 8.03562 8.35747 8.99807 9.23089 9.58416 11.02828 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.007350 B = 0.004731 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3808.425867 B = 5916.406995 C = 9033.588246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.363 6.363 4 C 0.048 3.952 5 C 0.113 3.887 6 N -0.620 5.620 7 C 0.183 3.817 8 C 0.020 3.980 9 C -0.199 4.199 10 C -0.090 4.090 11 C -0.087 4.087 12 C 0.575 3.425 13 O -0.500 6.500 14 O -0.507 6.507 15 O -0.152 6.152 16 C 0.526 3.474 17 O -0.518 6.518 18 C 0.026 3.974 19 H 0.053 0.947 20 C -0.131 4.131 21 C -0.498 4.498 22 H 0.070 0.930 23 C 0.062 3.938 24 N -0.897 5.897 25 Si 0.898 3.102 26 H -0.276 1.276 27 H -0.288 1.288 28 H -0.277 1.277 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.133 0.867 40 H 0.178 0.822 41 H 0.164 0.836 42 H 0.416 0.584 43 H 0.012 0.988 44 H 0.090 0.910 45 H 0.038 0.962 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.806 -10.912 -3.345 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.282 6.282 4 C -0.030 4.030 5 C -0.011 4.011 6 N -0.356 5.356 7 C 0.059 3.941 8 C -0.035 4.035 9 C -0.219 4.219 10 C -0.110 4.110 11 C -0.137 4.137 12 C 0.420 3.580 13 O -0.390 6.390 14 O -0.318 6.318 15 O -0.047 6.047 16 C 0.317 3.683 17 O -0.390 6.390 18 C 0.005 3.995 19 H 0.070 0.930 20 C -0.189 4.189 21 C -0.537 4.537 22 H 0.088 0.912 23 C -0.139 4.139 24 N -0.536 5.536 25 Si 0.726 3.274 26 H -0.202 1.202 27 H -0.214 1.214 28 H -0.203 1.203 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.151 0.849 40 H 0.195 0.805 41 H 0.181 0.819 42 H 0.274 0.726 43 H 0.031 0.969 44 H 0.109 0.891 45 H 0.057 0.943 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.062 -10.726 -3.700 16.560 hybrid contribution 0.207 0.710 -0.268 0.786 sum 12.269 -10.017 -3.968 16.328 Atomic orbital electron populations 1.21701 0.93839 1.01479 1.03698 1.22399 0.95812 0.84579 0.99097 1.88181 1.19931 1.24950 1.95110 1.22907 0.82715 0.97814 0.99541 1.21412 0.99032 0.91488 0.89148 1.48248 1.21656 1.56305 1.09374 1.20294 0.88548 0.93656 0.91643 1.23845 0.84023 0.99060 0.96529 1.22125 1.00245 0.93464 1.06016 1.22074 0.92165 1.00418 0.96371 1.20474 0.92923 0.87616 1.12730 1.18882 0.83347 0.81450 0.74306 1.90996 1.69702 1.23750 1.54599 1.84685 1.32364 1.45137 1.69645 1.84063 1.24336 1.34286 1.62020 1.22018 0.78280 0.76337 0.91683 1.90555 1.50002 1.59927 1.38547 1.19028 0.98457 0.93701 0.88283 0.92986 1.21807 0.98346 0.96240 1.02504 1.21037 1.19762 1.17135 0.95751 0.91203 1.24887 0.96887 0.97215 0.94921 1.69846 1.43306 1.40111 1.00329 0.86549 0.82200 0.81228 0.77438 1.20201 1.21388 1.20281 0.91685 0.91547 0.91854 0.94171 0.94024 0.93197 0.93645 0.88922 0.89987 0.89327 0.84930 0.80515 0.81865 0.72551 0.96900 0.89140 0.94262 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 37.16 0.38 -1.49 16 2 C 0.06 0.74 6.66 37.16 0.25 0.99 16 3 O -0.36 -6.00 9.71 -35.23 -0.34 -6.34 16 4 C 0.05 0.64 6.27 37.16 0.23 0.87 16 5 C 0.11 1.67 5.86 -4.04 -0.02 1.65 16 6 N -0.62 -10.63 2.41 -175.05 -0.42 -11.05 16 7 C 0.18 2.58 5.51 -5.20 -0.03 2.55 16 8 C 0.02 0.29 6.88 -35.40 -0.24 0.05 16 9 C -0.20 -3.11 9.97 -39.90 -0.40 -3.51 16 10 C -0.09 -1.32 10.62 -39.38 -0.42 -1.73 16 11 C -0.09 -1.25 7.18 -36.85 -0.26 -1.52 16 12 C 0.58 7.43 8.30 34.05 0.28 7.71 16 13 O -0.50 -7.39 17.65 -19.36 -0.34 -7.73 16 14 O -0.51 -4.91 13.44 -42.50 -0.57 -5.48 16 15 O -0.15 -2.19 10.67 4.74 0.05 -2.14 16 16 C 0.53 11.64 6.65 -10.98 -0.07 11.57 16 17 O -0.52 -13.33 14.80 5.56 0.08 -13.24 16 18 C 0.03 0.61 1.80 -92.92 -0.17 0.45 16 19 H 0.05 1.19 4.55 -51.93 -0.24 0.95 16 20 C -0.13 -2.88 8.45 37.16 0.31 -2.56 16 21 C -0.50 -13.64 8.34 -34.44 -0.29 -13.93 16 22 H 0.07 2.05 6.91 -52.49 -0.36 1.69 16 23 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 24 N -0.90 -23.90 11.41 55.43 0.63 -23.27 16 25 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.53 7.96 -51.93 -0.41 0.11 16 36 H 0.09 1.59 7.31 -51.93 -0.38 1.21 16 37 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 38 H 0.09 0.97 7.93 -51.93 -0.41 0.56 16 39 H 0.13 1.94 4.44 -51.93 -0.23 1.71 16 40 H 0.18 3.01 6.21 -52.49 -0.33 2.68 16 41 H 0.16 2.12 8.06 -52.48 -0.42 1.70 16 42 H 0.42 1.77 9.11 45.56 0.42 2.19 16 43 H 0.01 0.23 6.01 -51.93 -0.31 -0.09 16 44 H 0.09 2.13 6.31 -51.93 -0.33 1.81 16 45 H 0.04 0.91 8.13 -51.93 -0.42 0.49 16 46 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -33.72 387.25 -6.16 -39.88 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.52 Total: 4.47 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -0.54 Total: 2.63 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.21 Total: -34.32 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -1.12 Total: -34.93 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.72 -6.16 -39.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605635949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.332 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds