Wall clock time and date at job start Tue Mar 31 2020 22:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42895 * 109.47386 * 2 1 4 4 C 1.42898 * 114.00246 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47319 * 180.02562 * 4 3 2 6 6 N 1.46509 * 109.46799 * 65.00292 * 5 4 3 7 7 C 1.46498 * 119.99996 * 83.67786 * 6 5 4 8 8 C 1.50697 * 109.47477 * 84.94609 * 7 6 5 9 9 C 1.35170 * 125.61024 * 89.99365 * 8 7 6 10 10 C 1.40306 * 107.12481 * 179.74024 * 9 8 7 11 11 C 1.36635 * 106.70507 * 0.02562 * 10 9 8 12 12 C 1.46470 * 125.99658 * 180.02562 * 11 10 9 13 13 O 1.21622 * 120.00441 * 0.02562 * 12 11 10 14 14 O 1.34907 * 119.99971 * 180.02562 * 12 11 10 15 15 O 1.33915 * 125.60666 * 269.69705 * 8 7 6 16 16 C 1.34772 * 119.99552 * 263.67547 * 6 5 4 17 17 O 1.21275 * 120.00736 * 5.15130 * 16 6 5 18 18 C 1.50706 * 119.99800 * 185.14968 * 16 6 5 19 19 H 1.08998 * 109.47061 * 41.60157 * 18 16 6 20 20 C 1.53000 * 109.47001 * 281.60031 * 18 16 6 21 21 C 1.50699 * 109.47253 * 161.60174 * 18 16 6 22 22 H 1.08001 * 119.99886 * 359.97438 * 21 18 16 23 23 C 1.37876 * 120.00189 * 180.02562 * 21 18 16 24 24 N 1.31516 * 119.99862 * 359.97438 * 23 21 18 25 25 Si 1.86793 * 120.00218 * 179.97438 * 23 21 18 26 26 H 1.48503 * 109.46942 * 60.00034 * 25 23 21 27 27 H 1.48504 * 109.47300 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47247 * 300.00166 * 25 23 21 29 29 H 1.08997 * 109.47014 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46362 * 299.99835 * 1 2 3 31 31 H 1.08992 * 109.46993 * 59.99487 * 1 2 3 32 32 H 1.09002 * 109.46783 * 240.00376 * 2 1 3 33 33 H 1.09002 * 109.47041 * 120.00606 * 2 1 3 34 34 H 1.09002 * 109.47083 * 60.00013 * 4 3 2 35 35 H 1.08999 * 109.47002 * 300.00533 * 4 3 2 36 36 H 1.08998 * 109.47092 * 305.00448 * 5 4 3 37 37 H 1.09001 * 109.47301 * 184.99582 * 5 4 3 38 38 H 1.09004 * 109.47224 * 324.93937 * 7 6 5 39 39 H 1.09005 * 109.47037 * 204.94375 * 7 6 5 40 40 H 1.07997 * 126.43315 * 359.72125 * 9 8 7 41 41 H 1.08004 * 126.64564 * 180.02562 * 10 9 8 42 42 H 0.96705 * 116.99665 * 180.02562 * 14 12 11 43 43 H 1.09003 * 109.47121 * 52.63018 * 20 18 16 44 44 H 1.09004 * 109.47037 * 172.62233 * 20 18 16 45 45 H 1.08993 * 109.47176 * 292.62420 * 20 18 16 46 46 H 0.96996 * 120.00321 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 7 3.3881 3.5598 1.2526 7 6 4.2209 3.4533 2.4532 8 6 5.2604 4.5443 2.4419 9 6 5.1124 5.7780 2.9741 10 6 6.3122 6.4705 2.7517 11 6 7.1426 5.6137 2.0858 12 6 8.5078 5.9075 1.6440 13 8 8.9969 6.9990 1.8644 14 8 9.2229 4.9672 0.9923 15 8 6.4848 4.4491 1.9080 16 6 2.2195 4.2296 1.3002 17 8 1.4861 4.2391 0.3344 18 6 1.8241 4.9667 2.5538 19 1 2.6938 5.4814 2.9623 20 6 1.2905 3.9700 3.5847 21 6 0.7519 5.9740 2.2272 22 1 0.3929 6.0711 1.2132 23 6 0.2298 6.7725 3.2226 24 7 0.6672 6.6547 4.4573 25 14 -1.0988 8.0216 2.8177 26 1 -2.2840 7.3208 2.2613 27 1 -1.4885 8.7479 4.0529 28 1 -0.5806 8.9885 1.8169 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8334 0.9766 -0.8908 35 1 3.8341 0.9763 0.8891 36 1 3.3493 3.4418 -0.8411 37 1 4.9083 3.0254 -0.0898 38 1 4.7142 2.4814 2.4681 39 1 3.5952 3.5568 3.3397 40 1 4.2353 6.1590 3.4759 41 1 6.5360 7.4844 3.0491 42 1 10.1194 5.2074 0.7208 43 1 2.0153 3.1679 3.7236 44 1 1.1277 4.4810 4.5337 45 1 0.3483 3.5512 3.2313 46 1 0.2997 7.2161 5.1577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605635949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:44 Heat of formation + Delta-G solvation = -172.876080 kcal Electronic energy + Delta-G solvation = -30704.764465 eV Core-core repulsion = 26368.065458 eV Total energy + Delta-G solvation = -4336.699006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.84819 -41.06900 -40.79104 -38.80518 -37.26286 -36.74685 -35.81160 -34.25337 -33.19167 -32.18518 -31.75337 -29.83143 -27.95363 -27.19630 -25.04214 -24.51473 -23.62271 -23.00155 -22.66440 -21.65998 -20.15530 -19.55660 -18.70690 -18.35263 -17.99260 -17.70372 -17.49368 -17.12800 -16.83326 -16.63123 -16.28798 -15.95270 -15.65500 -15.03193 -14.93576 -14.78394 -14.50665 -14.19059 -14.17609 -14.12888 -13.96965 -13.51449 -13.31267 -13.05154 -12.93741 -12.84277 -12.74208 -12.72201 -12.60674 -12.38714 -12.18425 -12.17141 -12.09670 -11.99088 -11.85853 -11.15074 -10.97630 -10.55831 -10.43934 -10.14679 -9.87426 -9.64481 -8.11612 -6.18430 -0.32749 1.08033 1.28073 1.41951 1.42785 1.51068 1.78192 1.98571 2.18654 2.27893 2.49322 2.89676 3.19111 3.53521 3.79919 3.93293 4.02128 4.15774 4.18310 4.24128 4.32186 4.38537 4.46834 4.49383 4.52724 4.53590 4.58317 4.67212 4.74587 4.87798 4.90436 4.94586 5.02081 5.04586 5.12880 5.24151 5.27360 5.34718 5.52393 5.63129 5.81313 5.82921 5.97346 6.22153 6.46606 6.59440 6.82803 6.86154 7.45462 7.58897 8.94127 Molecular weight = 339.16amu Principal moments of inertia in cm(-1) A = 0.007350 B = 0.004731 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3808.425867 B = 5916.406995 C = 9033.588246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.408 6.408 4 C 0.048 3.952 5 C 0.110 3.890 6 N -0.611 5.611 7 C 0.181 3.819 8 C 0.023 3.977 9 C -0.216 4.216 10 C -0.099 4.099 11 C -0.089 4.089 12 C 0.585 3.415 13 O -0.522 6.522 14 O -0.496 6.496 15 O -0.145 6.145 16 C 0.526 3.474 17 O -0.565 6.565 18 C 0.023 3.977 19 H 0.059 0.941 20 C -0.117 4.117 21 C -0.525 4.525 22 H 0.039 0.961 23 C 0.029 3.971 24 N -0.904 5.904 25 Si 0.944 3.056 26 H -0.282 1.282 27 H -0.274 1.274 28 H -0.279 1.279 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.158 0.842 41 H 0.173 0.827 42 H 0.440 0.560 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.014 0.986 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.032 -12.712 -3.291 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.328 6.328 4 C -0.029 4.029 5 C -0.012 4.012 6 N -0.345 5.345 7 C 0.058 3.942 8 C -0.032 4.032 9 C -0.235 4.235 10 C -0.118 4.118 11 C -0.140 4.140 12 C 0.430 3.570 13 O -0.414 6.414 14 O -0.311 6.311 15 O -0.040 6.040 16 C 0.317 3.683 17 O -0.442 6.442 18 C 0.002 3.998 19 H 0.077 0.923 20 C -0.175 4.175 21 C -0.564 4.564 22 H 0.057 0.943 23 C -0.171 4.171 24 N -0.543 5.543 25 Si 0.770 3.230 26 H -0.208 1.208 27 H -0.199 1.199 28 H -0.204 1.204 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.132 0.868 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.176 0.824 41 H 0.191 0.809 42 H 0.304 0.696 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.034 0.966 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.363 -12.561 -3.635 19.423 hybrid contribution -0.378 1.240 -0.316 1.335 sum 13.985 -11.321 -3.951 18.421 Atomic orbital electron populations 1.21741 0.94490 1.02869 1.01635 1.22573 0.95403 0.83419 1.00853 1.88148 1.21877 1.27245 1.95495 1.23012 0.81558 0.96413 1.01960 1.21636 1.00450 0.92454 0.86708 1.48054 1.20301 1.54829 1.11302 1.20513 0.88093 0.95669 0.89945 1.23772 0.84340 0.98717 0.96325 1.22034 1.00195 0.94420 1.06886 1.22210 0.91926 1.01071 0.96634 1.20751 0.93658 0.87309 1.12244 1.18609 0.82906 0.81366 0.74104 1.90997 1.70048 1.24764 1.55596 1.84627 1.34000 1.43878 1.68588 1.84054 1.23976 1.34234 1.61756 1.21671 0.79547 0.76578 0.90460 1.90530 1.52085 1.61866 1.39743 1.18967 0.97640 0.93628 0.89560 0.92335 1.21612 0.98266 0.96791 1.00827 1.21161 1.21548 1.19129 0.94560 0.94317 1.25396 0.98314 0.98397 0.94965 1.69900 1.43601 1.40311 1.00451 0.85839 0.80021 0.79497 0.77614 1.20755 1.19866 1.20445 0.88555 0.94048 0.93431 0.92000 0.92402 0.90429 0.91297 0.91955 0.86791 0.84796 0.85538 0.82405 0.80944 0.69636 0.92880 0.90817 0.96624 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 10.28 71.99 0.74 -2.95 16 2 C 0.05 1.26 6.66 71.99 0.48 1.74 16 3 O -0.41 -13.03 9.71 -148.98 -1.45 -14.47 16 4 C 0.05 1.12 6.27 71.98 0.45 1.57 16 5 C 0.11 3.06 5.86 86.38 0.51 3.56 16 6 N -0.61 -20.24 2.41 -826.14 -1.99 -22.23 16 7 C 0.18 4.65 5.51 85.63 0.47 5.12 16 8 C 0.02 0.63 6.88 24.98 0.17 0.81 16 9 C -0.22 -6.68 9.97 22.07 0.22 -6.46 16 10 C -0.10 -2.80 10.62 22.40 0.24 -2.56 16 11 C -0.09 -2.40 7.18 24.04 0.17 -2.22 16 12 C 0.58 13.75 8.30 69.97 0.58 14.33 16 13 O -0.52 -14.50 17.65 19.44 0.34 -14.16 16 14 O -0.50 -7.96 13.44 -56.84 -0.76 -8.73 16 15 O -0.14 -3.81 10.67 -4.89 -0.05 -3.86 16 16 C 0.53 23.77 6.65 87.66 0.58 24.36 16 17 O -0.57 -30.40 14.80 -3.01 -0.04 -30.45 16 18 C 0.02 1.10 1.80 -12.28 -0.02 1.08 16 19 H 0.06 2.73 4.55 -2.39 -0.01 2.72 16 20 C -0.12 -5.19 8.45 71.98 0.61 -4.58 16 21 C -0.53 -29.90 8.34 25.60 0.21 -29.69 16 22 H 0.04 2.40 6.91 -2.91 -0.02 2.38 16 23 C 0.03 1.59 5.30 84.65 0.45 2.04 16 24 N -0.90 -48.65 11.41 21.45 0.24 -48.41 16 25 Si 0.94 44.72 29.54 68.60 2.03 46.75 16 26 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 27 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 28 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.29 7.96 -2.39 -0.02 1.27 16 36 H 0.06 2.14 7.31 -2.39 -0.02 2.12 16 37 H 0.11 2.41 8.12 -2.39 -0.02 2.39 16 38 H 0.13 2.29 7.93 -2.38 -0.02 2.27 16 39 H 0.13 3.45 4.44 -2.38 -0.01 3.44 16 40 H 0.16 5.53 6.21 -2.91 -0.02 5.51 16 41 H 0.17 4.42 8.06 -2.91 -0.02 4.39 16 42 H 0.44 2.19 9.11 -74.05 -0.67 1.52 16 43 H 0.05 1.87 6.01 -2.39 -0.01 1.85 16 44 H 0.07 3.51 6.31 -2.38 -0.02 3.49 16 45 H 0.01 0.71 8.13 -2.39 -0.02 0.69 16 46 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -76.12 387.25 4.53 -71.59 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.35 Total: 17.82 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.86 Total: 6.15 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -1.75 Total: -70.64 kcal Atomic # 8 Polarization: -69.71 SS G_CDS: -1.96 Total: -71.67 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -76.12 4.53 -71.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605635949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.288 kcal (2) G-P(sol) polarization free energy of solvation -76.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds