Wall clock time and date at job start Tue Mar 31 2020 22:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99934 * 2 1 4 4 C 1.46902 * 110.99877 * 123.95784 * 2 1 3 5 5 C 1.52998 * 109.46840 * 170.00264 * 4 2 1 6 6 C 1.53006 * 109.46855 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.47159 * 180.02562 * 6 5 4 8 8 C 1.46502 * 119.99798 * 269.99879 * 7 6 5 9 9 C 1.50698 * 109.46822 * 272.33373 * 8 7 6 10 10 H 1.07997 * 120.00214 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00077 * 180.02562 * 9 8 7 12 12 N 1.31518 * 120.00046 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00088 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47343 * 60.00022 * 13 11 9 15 15 H 1.48512 * 109.47322 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47259 * 299.99580 * 13 11 9 17 17 C 1.34774 * 120.00530 * 89.99332 * 7 6 5 18 18 O 1.21606 * 119.99636 * 4.55755 * 17 7 6 19 19 C 1.47432 * 120.00231 * 184.55389 * 17 7 6 20 20 C 1.39739 * 120.20092 * 301.19456 * 19 17 7 21 21 C 1.37845 * 119.91215 * 179.97438 * 20 19 17 22 22 Cl 1.73600 * 119.83868 * 179.97438 * 21 20 19 23 23 C 1.38703 * 120.32668 * 359.74855 * 21 20 19 24 24 C 1.37959 * 120.40674 * 0.51314 * 23 21 20 25 25 C 1.38936 * 120.07860 * 359.48391 * 24 23 21 26 26 N 1.38933 * 120.16288 * 180.23143 * 25 24 23 27 27 H 1.08998 * 109.47380 * 296.04462 * 1 2 3 28 28 H 1.09001 * 109.47279 * 56.04361 * 1 2 3 29 29 H 1.09001 * 109.47225 * 176.03736 * 1 2 3 30 30 H 1.09001 * 109.47139 * 183.94943 * 3 2 1 31 31 H 1.08997 * 109.47518 * 303.95780 * 3 2 1 32 32 H 1.09006 * 109.46919 * 63.95212 * 3 2 1 33 33 H 1.08997 * 109.47022 * 49.99819 * 4 2 1 34 34 H 1.09001 * 109.46501 * 290.00134 * 4 2 1 35 35 H 1.08997 * 109.47676 * 59.99956 * 5 4 2 36 36 H 1.09000 * 109.46728 * 299.99243 * 5 4 2 37 37 H 1.08997 * 109.47197 * 59.99439 * 6 5 4 38 38 H 1.09001 * 109.46310 * 299.99763 * 6 5 4 39 39 H 1.08999 * 109.47362 * 32.32782 * 8 7 6 40 40 H 1.09000 * 109.47566 * 152.33179 * 8 7 6 41 41 H 0.96999 * 119.99784 * 180.02562 * 12 11 9 42 42 H 1.08008 * 120.04444 * 359.95963 * 20 19 17 43 43 H 1.07996 * 119.80068 * 180.25533 * 23 21 20 44 44 H 1.08004 * 119.95657 * 179.76552 * 24 23 21 45 45 H 0.96999 * 119.99919 * 354.85042 * 26 25 24 46 46 H 0.97005 * 120.00076 * 174.84267 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 3.5044 -0.9553 0.9703 6 6 4.0526 -1.7538 2.1548 7 7 5.4976 -1.9345 1.9950 8 6 6.0149 -3.1051 1.2820 9 6 6.1826 -4.2487 2.2490 10 1 5.9296 -4.1166 3.2906 11 6 6.6601 -5.4632 1.8042 12 7 6.9687 -5.6240 0.5359 13 14 6.8686 -6.8805 3.0030 14 1 5.5548 -7.2123 3.6107 15 1 7.3929 -8.0673 2.2803 16 1 7.8233 -6.4892 4.0710 17 6 6.3511 -1.0240 2.5038 18 8 5.9268 -0.0968 3.1664 19 6 7.7990 -1.1521 2.2572 20 6 8.4823 -2.3013 2.6637 21 6 9.8359 -2.4151 2.4297 22 17 10.6830 -3.8433 2.9360 23 6 10.5237 -1.3961 1.7874 24 6 9.8634 -0.2535 1.3852 25 6 8.4992 -0.1211 1.6125 26 7 7.8316 1.0268 1.2039 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3634 -1.0252 -0.0710 30 1 3.0828 1.3432 -0.0708 31 1 1.5898 1.9164 -0.8523 32 1 1.7043 1.8723 0.9233 33 1 1.5089 -1.7407 1.1755 34 1 1.7974 -0.2248 2.0627 35 1 3.9910 0.0193 0.9323 36 1 3.7023 -1.4966 0.0451 37 1 3.5661 -2.7284 2.1923 38 1 3.8546 -1.2129 3.0802 39 1 5.3141 -3.3921 0.4980 40 1 6.9794 -2.8620 0.8360 41 1 7.3042 -6.4786 0.2230 42 1 7.9505 -3.0992 3.1608 43 1 11.5834 -1.4960 1.6047 44 1 10.4069 0.5371 0.8890 45 1 8.3293 1.7690 0.8267 46 1 6.8677 1.0860 1.2957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625694499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:21 Heat of formation + Delta-G solvation = -17.028145 kcal Electronic energy + Delta-G solvation = -27984.422295 eV Core-core repulsion = 24127.483278 eV Total energy + Delta-G solvation = -3856.939017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.93017 -38.17443 -37.48401 -35.97235 -35.23518 -33.91013 -32.96389 -31.77739 -30.44426 -28.15820 -27.65684 -27.39708 -25.99183 -23.63536 -22.98423 -22.31077 -21.53719 -20.66250 -18.83816 -16.93041 -16.83057 -16.72869 -16.30823 -15.79761 -15.57886 -15.14362 -14.94353 -14.63851 -14.32564 -14.14305 -13.81136 -13.68268 -13.40776 -13.04714 -12.78773 -12.45603 -12.34091 -12.18711 -11.84773 -11.78504 -11.71466 -11.58270 -11.44847 -11.40993 -11.19693 -11.03114 -10.87864 -10.73517 -10.39159 -10.26785 -10.08969 -9.79168 -9.74282 -9.19144 -8.58873 -8.40447 -8.38877 -7.77590 -7.16733 -6.15695 -4.22975 1.52915 1.88043 2.78582 3.27720 3.30111 3.32769 3.37015 3.74785 4.04238 4.08461 4.20671 4.37374 5.01064 5.09490 5.14357 5.16866 5.24187 5.25810 5.33325 5.48672 5.56894 5.59663 5.64982 5.74210 5.76121 5.78593 5.84308 5.92144 5.96282 6.12682 6.32497 6.40505 6.45178 6.57296 6.58553 6.76223 6.80686 6.99513 7.02291 7.11176 7.24146 7.51402 7.65689 7.76485 7.92143 8.06734 8.28520 8.76989 8.93839 9.43839 10.90712 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.004302 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.409291 B = 6506.659411 C = 8690.065057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.059 3.941 5 C -0.127 4.127 6 C 0.120 3.880 7 N -0.584 5.584 8 C 0.236 3.764 9 C -0.544 4.544 10 H 0.060 0.940 11 C 0.076 3.924 12 N -0.881 5.881 13 Si 0.885 3.115 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.270 1.270 17 C 0.566 3.434 18 O -0.572 6.572 19 C -0.188 4.188 20 C 0.000 4.000 21 C -0.097 4.097 22 Cl -0.083 7.083 23 C -0.050 4.050 24 C -0.206 4.206 25 C 0.258 3.742 26 N -0.864 5.864 27 H 0.023 0.977 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.024 0.976 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.043 0.957 41 H 0.266 0.734 42 H 0.162 0.838 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.396 0.604 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.828 11.207 -1.308 11.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.126 4.126 4 C -0.070 4.070 5 C -0.166 4.166 6 C -0.004 4.004 7 N -0.312 5.312 8 C 0.116 3.884 9 C -0.582 4.582 10 H 0.079 0.921 11 C -0.128 4.128 12 N -0.518 5.518 13 Si 0.712 3.288 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.196 1.196 17 C 0.355 3.645 18 O -0.454 6.454 19 C -0.196 4.196 20 C -0.019 4.019 21 C -0.125 4.125 22 Cl -0.055 7.055 23 C -0.069 4.069 24 C -0.229 4.229 25 C 0.149 3.851 26 N -0.402 5.402 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.179 0.821 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.224 0.776 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -1.768 11.128 -1.513 11.368 hybrid contribution -0.202 -0.485 1.092 1.212 sum -1.970 10.643 -0.421 10.832 Atomic orbital electron populations 1.22370 0.87606 1.02228 1.00136 1.61968 1.07536 1.13892 1.43750 1.22421 1.01362 0.88775 1.00021 1.22081 0.95967 0.98099 0.90807 1.21936 0.93746 1.00829 1.00128 1.21235 0.81230 1.00433 0.97529 1.48197 1.05084 1.23901 1.54049 1.19517 0.95712 0.81013 0.92143 1.21347 1.45377 0.96076 0.95385 0.92148 1.24839 0.94669 0.98276 0.95059 1.69899 1.42692 1.25259 1.13915 0.86738 0.78751 0.81811 0.81462 1.20204 1.21077 1.19551 1.18033 0.85725 0.81798 0.78955 1.90690 1.79192 1.34654 1.40893 1.19173 0.94090 0.96374 1.09940 1.21540 0.91728 0.95229 0.93448 1.20401 0.93099 0.90505 1.08497 1.98327 1.77542 1.39369 1.90216 1.20768 0.99538 0.91628 0.94990 1.20276 0.92351 1.00161 1.10106 1.17607 0.91136 0.86056 0.90252 1.42345 1.10673 1.16401 1.70794 0.95888 0.91622 0.91309 0.90976 0.91767 0.95786 0.90519 0.94800 0.92186 0.90775 0.90096 0.91019 0.94721 0.93858 0.92412 0.82114 0.85495 0.85552 0.77599 0.76777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.57 60.07 0.57 0.83 16 2 N -0.55 -6.81 5.02 -251.26 -1.26 -8.07 16 3 C 0.02 0.25 9.32 60.06 0.56 0.81 16 4 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 5 C -0.13 -1.95 5.46 -26.73 -0.15 -2.10 16 6 C 0.12 2.11 5.45 -4.04 -0.02 2.09 16 7 N -0.58 -11.91 2.46 -176.33 -0.43 -12.34 16 8 C 0.24 5.47 4.70 -5.19 -0.02 5.45 16 9 C -0.54 -13.58 6.90 -34.44 -0.24 -13.82 16 10 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 11 C 0.08 1.97 5.46 -17.82 -0.10 1.87 16 12 N -0.88 -23.82 13.29 55.43 0.74 -23.08 16 13 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 C 0.57 11.67 6.26 -12.52 -0.08 11.59 16 18 O -0.57 -12.40 15.84 5.27 0.08 -12.32 16 19 C -0.19 -3.68 4.54 -104.81 -0.48 -4.16 16 20 C 0.00 0.00 7.62 -39.16 -0.30 -0.30 16 21 C -0.10 -1.78 6.31 -39.55 -0.25 -2.03 16 22 Cl -0.08 -1.50 28.94 -51.86 -1.50 -3.00 16 23 C -0.05 -0.77 9.81 -39.51 -0.39 -1.16 16 24 C -0.21 -3.01 9.88 -39.42 -0.39 -3.40 16 25 C 0.26 4.27 6.76 -83.60 -0.57 3.71 16 26 N -0.86 -11.84 8.94 32.55 0.29 -11.55 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 29 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.07 0.84 6.47 -51.93 -0.34 0.51 16 31 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 34 H 0.03 0.44 8.12 -51.93 -0.42 0.01 16 35 H 0.06 0.94 6.55 -51.93 -0.34 0.60 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 38 H 0.07 1.27 7.36 -51.93 -0.38 0.89 16 39 H 0.03 0.85 8.09 -51.93 -0.42 0.43 16 40 H 0.04 1.08 6.09 -51.93 -0.32 0.76 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 42 H 0.16 3.64 5.71 -52.48 -0.30 3.34 16 43 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 45 H 0.40 4.04 8.84 -40.82 -0.36 3.67 16 46 H 0.40 5.93 7.15 -40.82 -0.29 5.63 16 LS Contribution 389.91 15.07 5.88 5.88 Total: -1.00 -28.46 389.91 -10.02 -38.48 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.93 Total: 10.47 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.86 Total: 0.15 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.67 Total: -55.05 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -1.50 Total: -3.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.46 -10.02 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625694499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.452 kcal (2) G-P(sol) polarization free energy of solvation -28.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds