Wall clock time and date at job start Tue Mar 31 2020 22:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99934 * 2 1 4 4 C 1.46902 * 110.99877 * 123.95784 * 2 1 3 5 5 C 1.52998 * 109.46840 * 170.00264 * 4 2 1 6 6 C 1.53006 * 109.46855 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.47159 * 180.02562 * 6 5 4 8 8 C 1.46502 * 119.99798 * 269.99879 * 7 6 5 9 9 C 1.50698 * 109.46822 * 272.33373 * 8 7 6 10 10 H 1.07997 * 120.00214 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00077 * 180.02562 * 9 8 7 12 12 N 1.31518 * 120.00046 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00088 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47343 * 60.00022 * 13 11 9 15 15 H 1.48512 * 109.47322 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47259 * 299.99580 * 13 11 9 17 17 C 1.34774 * 120.00530 * 89.99332 * 7 6 5 18 18 O 1.21606 * 119.99636 * 4.55755 * 17 7 6 19 19 C 1.47432 * 120.00231 * 184.55389 * 17 7 6 20 20 C 1.39739 * 120.20092 * 301.19456 * 19 17 7 21 21 C 1.37845 * 119.91215 * 179.97438 * 20 19 17 22 22 Cl 1.73600 * 119.83868 * 179.97438 * 21 20 19 23 23 C 1.38703 * 120.32668 * 359.74855 * 21 20 19 24 24 C 1.37959 * 120.40674 * 0.51314 * 23 21 20 25 25 C 1.38936 * 120.07860 * 359.48391 * 24 23 21 26 26 N 1.38933 * 120.16288 * 180.23143 * 25 24 23 27 27 H 1.08998 * 109.47380 * 296.04462 * 1 2 3 28 28 H 1.09001 * 109.47279 * 56.04361 * 1 2 3 29 29 H 1.09001 * 109.47225 * 176.03736 * 1 2 3 30 30 H 1.09001 * 109.47139 * 183.94943 * 3 2 1 31 31 H 1.08997 * 109.47518 * 303.95780 * 3 2 1 32 32 H 1.09006 * 109.46919 * 63.95212 * 3 2 1 33 33 H 1.08997 * 109.47022 * 49.99819 * 4 2 1 34 34 H 1.09001 * 109.46501 * 290.00134 * 4 2 1 35 35 H 1.08997 * 109.47676 * 59.99956 * 5 4 2 36 36 H 1.09000 * 109.46728 * 299.99243 * 5 4 2 37 37 H 1.08997 * 109.47197 * 59.99439 * 6 5 4 38 38 H 1.09001 * 109.46310 * 299.99763 * 6 5 4 39 39 H 1.08999 * 109.47362 * 32.32782 * 8 7 6 40 40 H 1.09000 * 109.47566 * 152.33179 * 8 7 6 41 41 H 0.96999 * 119.99784 * 180.02562 * 12 11 9 42 42 H 1.08008 * 120.04444 * 359.95963 * 20 19 17 43 43 H 1.07996 * 119.80068 * 180.25533 * 23 21 20 44 44 H 1.08004 * 119.95657 * 179.76552 * 24 23 21 45 45 H 0.96999 * 119.99919 * 354.85042 * 26 25 24 46 46 H 0.97005 * 120.00076 * 174.84267 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 3.5044 -0.9553 0.9703 6 6 4.0526 -1.7538 2.1548 7 7 5.4976 -1.9345 1.9950 8 6 6.0149 -3.1051 1.2820 9 6 6.1826 -4.2487 2.2490 10 1 5.9296 -4.1166 3.2906 11 6 6.6601 -5.4632 1.8042 12 7 6.9687 -5.6240 0.5359 13 14 6.8686 -6.8805 3.0030 14 1 5.5548 -7.2123 3.6107 15 1 7.3929 -8.0673 2.2803 16 1 7.8233 -6.4892 4.0710 17 6 6.3511 -1.0240 2.5038 18 8 5.9268 -0.0968 3.1664 19 6 7.7990 -1.1521 2.2572 20 6 8.4823 -2.3013 2.6637 21 6 9.8359 -2.4151 2.4297 22 17 10.6830 -3.8433 2.9360 23 6 10.5237 -1.3961 1.7874 24 6 9.8634 -0.2535 1.3852 25 6 8.4992 -0.1211 1.6125 26 7 7.8316 1.0268 1.2039 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3634 -1.0252 -0.0710 30 1 3.0828 1.3432 -0.0708 31 1 1.5898 1.9164 -0.8523 32 1 1.7043 1.8723 0.9233 33 1 1.5089 -1.7407 1.1755 34 1 1.7974 -0.2248 2.0627 35 1 3.9910 0.0193 0.9323 36 1 3.7023 -1.4966 0.0451 37 1 3.5661 -2.7284 2.1923 38 1 3.8546 -1.2129 3.0802 39 1 5.3141 -3.3921 0.4980 40 1 6.9794 -2.8620 0.8360 41 1 7.3042 -6.4786 0.2230 42 1 7.9505 -3.0992 3.1608 43 1 11.5834 -1.4960 1.6047 44 1 10.4069 0.5371 0.8890 45 1 8.3293 1.7690 0.8267 46 1 6.8677 1.0860 1.2957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625694499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:20 Heat of formation + Delta-G solvation = -34.372277 kcal Electronic energy + Delta-G solvation = -27985.174393 eV Core-core repulsion = 24127.483278 eV Total energy + Delta-G solvation = -3857.691115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42392 -39.53363 -38.57925 -37.35577 -36.86903 -35.18413 -34.75700 -33.27055 -31.77251 -29.49771 -29.18305 -28.49393 -27.28995 -25.12166 -24.65783 -23.58564 -22.84380 -21.78636 -20.36495 -18.61575 -18.37535 -18.08569 -17.83101 -17.25479 -16.70625 -16.49204 -16.16393 -16.11778 -15.71018 -15.44940 -15.06038 -14.98730 -14.79356 -14.43326 -14.34727 -14.11074 -13.42645 -13.39407 -13.25700 -13.15426 -12.99964 -12.92212 -12.88650 -12.64993 -12.56417 -12.49565 -12.41563 -12.33108 -11.97615 -11.75948 -11.69511 -11.52850 -11.07507 -10.79799 -10.54644 -9.84295 -9.48693 -9.32069 -8.43963 -8.16028 -6.27797 0.17735 0.52666 1.38049 1.41647 1.44062 1.48977 1.76154 2.24955 2.45114 2.82436 2.91763 3.04284 3.15903 3.66983 3.93414 3.99119 4.10692 4.22045 4.27470 4.39736 4.45086 4.48823 4.49824 4.59532 4.62244 4.66859 4.74873 4.80519 4.93390 4.99361 5.01165 5.03262 5.11314 5.15651 5.21690 5.22887 5.31809 5.44867 5.68081 5.74518 5.83984 6.04768 6.09472 6.11299 6.40619 6.53133 6.81676 6.91038 7.25778 7.42965 8.89493 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.004302 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.409291 B = 6506.659411 C = 8690.065057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.564 5.564 3 C 0.023 3.977 4 C 0.066 3.934 5 C -0.111 4.111 6 C 0.118 3.882 7 N -0.587 5.587 8 C 0.258 3.742 9 C -0.540 4.540 10 H 0.050 0.950 11 C 0.041 3.959 12 N -0.908 5.908 13 Si 0.931 3.069 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.271 1.271 17 C 0.567 3.433 18 O -0.587 6.587 19 C -0.219 4.219 20 C -0.021 4.021 21 C -0.114 4.114 22 Cl -0.089 7.089 23 C -0.040 4.040 24 C -0.191 4.191 25 C 0.257 3.743 26 N -0.851 5.851 27 H 0.029 0.971 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.027 0.973 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.017 0.983 40 H 0.028 0.972 41 H 0.266 0.734 42 H 0.129 0.871 43 H 0.160 0.840 44 H 0.172 0.828 45 H 0.415 0.585 46 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.332 12.824 -1.876 13.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.288 5.288 3 C -0.125 4.125 4 C -0.063 4.063 5 C -0.150 4.150 6 C -0.005 4.005 7 N -0.315 5.315 8 C 0.137 3.863 9 C -0.578 4.578 10 H 0.068 0.932 11 C -0.161 4.161 12 N -0.547 5.547 13 Si 0.757 3.243 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.196 1.196 17 C 0.356 3.644 18 O -0.470 6.470 19 C -0.228 4.228 20 C -0.041 4.041 21 C -0.143 4.143 22 Cl -0.060 7.060 23 C -0.060 4.060 24 C -0.213 4.213 25 C 0.147 3.853 26 N -0.388 5.388 27 H 0.047 0.953 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.035 0.965 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.146 0.854 43 H 0.178 0.822 44 H 0.189 0.811 45 H 0.247 0.753 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.289 12.782 -2.085 13.015 hybrid contribution -0.350 -0.883 1.260 1.578 sum -1.640 11.900 -0.825 12.041 Atomic orbital electron populations 1.22424 0.85978 1.02815 1.01086 1.61954 1.09117 1.14541 1.43228 1.22437 1.00784 0.88356 1.00944 1.21957 0.94153 0.98702 0.91477 1.21735 0.95468 0.99750 0.98040 1.21356 0.79904 1.00664 0.98593 1.48170 1.06272 1.23235 1.53870 1.19050 0.94397 0.81463 0.91379 1.21435 1.44620 0.96676 0.95051 0.93159 1.25366 0.94549 1.00085 0.96112 1.69981 1.43844 1.25688 1.15158 0.86006 0.78782 0.79622 0.79894 1.19637 1.20761 1.19565 1.18255 0.86382 0.81337 0.78395 1.90660 1.79698 1.35175 1.41499 1.19190 0.93518 0.97699 1.12354 1.21247 0.92798 0.95090 0.94932 1.20561 0.92650 0.91343 1.09723 1.98314 1.77354 1.39965 1.90403 1.21160 1.01025 0.90637 0.93140 1.20754 0.91389 1.00685 1.08505 1.17802 0.92059 0.85945 0.89472 1.42317 1.10578 1.16152 1.69798 0.95259 0.90214 0.91054 0.92032 0.90096 0.95458 0.90154 0.94416 0.92497 0.92350 0.90460 0.91110 0.96481 0.95451 0.92473 0.85370 0.82203 0.81089 0.75293 0.77289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.57 127.69 1.22 1.68 16 2 N -0.56 -13.37 5.02 -948.84 -4.76 -18.13 16 3 C 0.02 0.48 9.32 127.69 1.19 1.67 16 4 C 0.07 1.68 4.96 86.30 0.43 2.11 16 5 C -0.11 -3.44 5.46 30.60 0.17 -3.27 16 6 C 0.12 4.27 5.45 86.38 0.47 4.74 16 7 N -0.59 -24.74 2.46 -830.03 -2.04 -26.78 16 8 C 0.26 12.43 4.70 85.63 0.40 12.83 16 9 C -0.54 -27.81 6.90 25.60 0.18 -27.64 16 10 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 11 C 0.04 2.14 5.46 84.65 0.46 2.60 16 12 N -0.91 -50.07 13.29 21.45 0.28 -49.79 16 13 Si 0.93 42.36 29.54 68.60 2.03 44.38 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 C 0.57 23.83 6.26 86.67 0.54 24.37 16 18 O -0.59 -25.69 15.84 -4.05 -0.06 -25.75 16 19 C -0.22 -8.66 4.54 -19.98 -0.09 -8.75 16 20 C -0.02 -0.87 7.62 22.54 0.17 -0.70 16 21 C -0.11 -4.16 6.31 22.29 0.14 -4.02 16 22 Cl -0.09 -3.20 28.94 -2.72 -0.08 -3.28 16 23 C -0.04 -1.14 9.81 22.31 0.22 -0.92 16 24 C -0.19 -4.91 9.88 22.37 0.22 -4.69 16 25 C 0.26 8.09 6.76 38.69 0.26 8.35 16 26 N -0.85 -21.48 8.94 -50.93 -0.46 -21.94 16 27 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.08 1.23 8.12 -2.39 -0.02 1.21 16 29 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 30 H 0.06 1.40 6.47 -2.39 -0.02 1.38 16 31 H 0.08 1.40 8.12 -2.39 -0.02 1.38 16 32 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.08 1.99 8.06 -2.39 -0.02 1.97 16 34 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 35 H 0.06 1.79 6.55 -2.39 -0.02 1.77 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.08 2.81 8.07 -2.39 -0.02 2.79 16 38 H 0.07 2.57 7.36 -2.39 -0.02 2.55 16 39 H 0.02 0.88 8.09 -2.39 -0.02 0.86 16 40 H 0.03 1.42 6.09 -2.39 -0.01 1.41 16 41 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.13 6.11 5.71 -2.91 -0.02 6.10 16 43 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 44 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 45 H 0.42 7.10 8.84 -92.71 -0.82 6.28 16 46 H 0.40 11.23 7.15 -92.70 -0.66 10.57 16 Total: -1.00 -62.48 389.91 0.42 -62.06 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: -0.48 Total: 30.87 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 5.99 Total: 8.36 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -6.97 Total: -116.63 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.06 Total: -25.75 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 17 Polarization: -3.20 SS G_CDS: -0.08 Total: -3.28 kcal Total: -62.48 0.42 -62.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625694499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.684 kcal (2) G-P(sol) polarization free energy of solvation -62.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds