Wall clock time and date at job start Tue Mar 31 2020 23:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00008 * 2 1 4 4 H 1.48499 * 109.47042 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47092 * 299.99955 * 3 2 1 6 6 H 1.48500 * 109.46932 * 60.00196 * 3 2 1 7 7 C 1.38810 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00157 * 160.77071 * 7 2 1 9 9 N 1.36938 * 120.00344 * 340.77049 * 7 2 1 10 10 C 1.46925 * 120.62824 * 334.13368 * 9 7 2 11 11 C 1.53193 * 108.77650 * 233.58682 * 10 9 7 12 12 C 1.53041 * 109.31120 * 305.36364 * 11 10 9 13 13 C 1.53001 * 109.45767 * 181.38173 * 12 11 10 14 14 N 1.46508 * 109.46918 * 174.97247 * 13 12 11 15 15 C 1.34769 * 120.00125 * 180.02562 * 14 13 12 16 16 O 1.21610 * 120.00175 * 0.02562 * 15 14 13 17 17 C 1.47435 * 120.00231 * 180.02562 * 15 14 13 18 18 C 1.39821 * 120.18185 * 354.04635 * 17 15 14 19 19 C 1.37904 * 119.93353 * 180.02562 * 18 17 15 20 20 F 1.35104 * 119.83952 * 179.97438 * 19 18 17 21 21 C 1.38798 * 120.32214 * 0.02562 * 19 18 17 22 22 C 1.38106 * 120.37475 * 359.67679 * 21 19 18 23 23 F 1.35100 * 119.97523 * 180.32416 * 22 21 19 24 24 C 1.39138 * 120.05025 * 0.60404 * 22 21 19 25 25 N 1.39146 * 120.15596 * 179.69642 * 24 22 21 26 26 C 1.53041 * 109.52737 * 61.37197 * 12 11 10 27 27 C 1.46924 * 120.63276 * 154.11026 * 9 7 2 28 28 H 0.96999 * 119.99459 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58731 * 113.79720 * 10 9 7 30 30 H 1.09003 * 109.70459 * 353.43805 * 10 9 7 31 31 H 1.08997 * 109.50095 * 185.41394 * 11 10 9 32 32 H 1.09004 * 109.49780 * 65.31250 * 11 10 9 33 33 H 1.08994 * 109.46020 * 301.36099 * 12 11 10 34 34 H 1.09000 * 109.47082 * 54.98192 * 13 12 11 35 35 H 1.08993 * 109.47526 * 294.97159 * 13 12 11 36 36 H 0.97004 * 119.99688 * 0.02562 * 14 13 12 37 37 H 1.07999 * 120.03549 * 359.97438 * 18 17 15 38 38 H 1.08001 * 119.81319 * 179.97438 * 21 19 18 39 39 H 0.96993 * 120.00190 * 335.37607 * 25 24 22 40 40 H 0.97003 * 120.00194 * 155.37101 * 25 24 22 41 41 H 1.09007 * 109.49980 * 58.57815 * 26 12 11 42 42 H 1.08994 * 109.50158 * 178.67732 * 26 12 11 43 43 H 1.08999 * 109.58517 * 246.20268 * 27 9 7 44 44 H 1.09003 * 109.58817 * 6.48299 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0451 -1.2282 -0.3086 9 7 1.3829 -2.3552 0.3895 10 6 0.2396 -2.3103 1.3112 11 6 0.5224 -3.2424 2.4935 12 6 0.8512 -4.6415 1.9676 13 6 1.1006 -5.5838 3.1469 14 7 1.2968 -6.9477 2.6493 15 6 1.5330 -7.9534 3.5148 16 8 1.5829 -7.7288 4.7089 17 6 1.7311 -9.3258 3.0139 18 6 1.5521 -9.6116 1.6570 19 6 1.7382 -10.8972 1.1941 20 9 1.5643 -11.1713 -0.1174 21 6 2.1022 -11.9112 2.0692 22 6 2.2884 -11.6423 3.4110 23 9 2.6491 -12.6341 4.2544 24 6 2.0991 -10.3519 3.8958 25 7 2.2799 -10.0799 5.2483 26 6 2.1050 -4.5774 1.0923 27 6 1.8400 -3.6606 -0.1061 28 1 -0.4849 0.8401 0.0004 29 1 -0.6607 -2.6403 0.7929 30 1 0.0998 -1.2920 1.6741 31 1 -0.3568 -3.2926 3.1358 32 1 1.3689 -2.8600 3.0639 33 1 0.0143 -5.0131 1.3764 34 1 0.2415 -5.5619 3.8174 35 1 1.9912 -5.2624 3.6868 36 1 1.2567 -7.1268 1.6968 37 1 1.2677 -8.8264 0.9721 38 1 2.2454 -12.9153 1.6979 39 1 2.1834 -10.7891 5.9029 40 1 2.5026 -9.1809 5.5367 41 1 2.9364 -4.1823 1.6761 42 1 2.3523 -5.5778 0.7371 43 1 1.0702 -4.1007 -0.7399 44 1 2.7573 -3.5326 -0.6808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627909950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:02 Heat of formation + Delta-G solvation = -100.297727 kcal Electronic energy + Delta-G solvation = -28948.704125 eV Core-core repulsion = 24536.357588 eV Total energy + Delta-G solvation = -4412.346537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.98397 -49.83443 -41.48339 -39.70489 -38.90615 -36.60569 -35.43345 -34.45744 -32.84724 -31.94033 -31.30022 -29.47221 -28.39682 -26.11626 -25.04016 -23.81798 -23.43804 -22.57286 -21.82246 -20.71119 -19.63222 -18.80866 -18.64233 -18.22160 -17.53089 -17.20806 -17.01173 -16.83050 -16.70971 -16.30895 -16.26544 -16.10813 -15.69640 -15.43716 -15.28742 -15.09435 -14.92632 -14.72448 -14.17595 -13.97597 -13.77524 -13.58526 -13.39141 -13.20928 -13.01293 -12.94995 -12.79606 -12.57101 -12.21537 -11.98387 -11.81583 -11.61283 -11.53238 -11.24292 -11.09239 -10.94126 -10.51353 -10.31028 -10.01928 -8.68505 -8.68031 -7.86585 -5.28032 -0.48923 0.04416 1.45722 1.48514 1.58240 1.59326 2.02124 2.49249 2.52403 2.72201 2.91457 3.27187 3.27462 3.44534 3.67817 3.73018 3.87015 3.91551 3.96756 4.10416 4.37161 4.51885 4.54691 4.56706 4.67643 4.71874 4.75954 4.80357 4.85566 4.87301 4.96241 5.03946 5.15435 5.30425 5.31671 5.36125 5.45749 5.57355 5.58004 5.68100 5.81765 6.30231 6.40320 6.44979 6.74803 7.14302 7.16920 7.90480 8.39497 9.19704 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.002185 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.219557 B =12811.008374 C =13549.305315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.053 4.053 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.612 5.612 10 C 0.174 3.826 11 C -0.121 4.121 12 C -0.080 4.080 13 C 0.137 3.863 14 N -0.706 5.706 15 C 0.568 3.432 16 O -0.571 6.571 17 C -0.180 4.180 18 C -0.070 4.070 19 C 0.057 3.943 20 F -0.136 7.136 21 C -0.105 4.105 22 C 0.035 3.965 23 F -0.133 7.133 24 C 0.233 3.767 25 N -0.848 5.848 26 C -0.115 4.115 27 C 0.139 3.861 28 H 0.249 0.751 29 H -0.002 1.002 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.412 0.588 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.407 0.593 40 H 0.416 0.584 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.019 0.981 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.448 -25.701 6.658 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.248 4.248 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.388 4.388 8 H 0.083 0.917 9 N -0.336 5.336 10 C 0.049 3.951 11 C -0.161 4.161 12 C -0.099 4.099 13 C 0.014 3.986 14 N -0.358 5.358 15 C 0.358 3.642 16 O -0.452 6.452 17 C -0.188 4.188 18 C -0.090 4.090 19 C 0.035 3.965 20 F -0.115 7.115 21 C -0.125 4.125 22 C 0.011 3.989 23 F -0.111 7.111 24 C 0.120 3.880 25 N -0.393 5.393 26 C -0.154 4.154 27 C 0.013 3.987 28 H 0.058 0.942 29 H 0.016 0.984 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.251 0.749 37 H 0.182 0.818 38 H 0.190 0.810 39 H 0.238 0.762 40 H 0.254 0.746 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.037 0.963 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.413 -25.380 7.469 26.676 hybrid contribution 0.158 1.039 -0.318 1.098 sum 3.571 -24.341 7.152 25.620 Atomic orbital electron populations 1.70202 1.06563 1.25659 1.55671 1.25691 0.95980 1.01321 1.01844 0.85290 0.78689 0.80261 0.76725 1.19224 1.22054 1.21774 1.19543 0.93606 0.86561 1.39114 0.91684 1.44374 1.36150 1.01850 1.51237 1.20605 0.87724 0.98009 0.88794 1.21962 1.00920 0.95010 0.98185 1.21168 0.98753 0.94317 0.95644 1.21333 1.01478 0.79754 0.96067 1.45810 1.71572 1.07518 1.10878 1.17974 0.76102 0.84525 0.85648 1.90578 1.53658 1.84395 1.16586 1.18974 1.12942 0.93176 0.93753 1.21312 0.96822 0.96514 0.94339 1.16813 1.07766 0.93278 0.78616 1.91538 1.93559 1.94374 1.32049 1.21212 0.98764 1.01760 0.90791 1.16744 1.09766 0.84450 0.87980 1.91496 1.89881 1.59519 1.70251 1.17800 0.92220 0.91326 0.86629 1.42854 1.76923 1.16587 1.02944 1.21941 0.96922 0.99583 0.96963 1.21084 0.97185 0.85803 0.94589 0.94198 0.98395 0.92947 0.91203 0.93060 0.90360 0.91416 0.91926 0.74950 0.81773 0.81012 0.76244 0.74637 0.92980 0.89641 0.96334 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 11.17 21.65 0.24 -54.65 16 2 C -0.05 -2.96 4.88 84.86 0.41 -2.54 16 3 Si 0.96 44.71 29.60 68.60 2.03 46.74 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 7 C -0.26 -14.00 9.59 84.03 0.81 -13.20 16 8 H 0.07 3.46 7.89 -2.91 -0.02 3.44 16 9 N -0.61 -29.70 3.00 -699.09 -2.10 -31.80 16 10 C 0.17 8.09 5.33 86.36 0.46 8.55 16 11 C -0.12 -4.17 5.36 30.67 0.16 -4.01 16 12 C -0.08 -2.16 2.19 -10.77 -0.02 -2.18 16 13 C 0.14 3.18 5.06 86.38 0.44 3.62 16 14 N -0.71 -13.47 5.22 -466.36 -2.43 -15.90 16 15 C 0.57 12.25 7.74 86.67 0.67 12.92 16 16 O -0.57 -15.31 13.81 -4.06 -0.06 -15.37 16 17 C -0.18 -3.18 5.89 -19.99 -0.12 -3.30 16 18 C -0.07 -0.98 9.49 22.57 0.21 -0.76 16 19 C 0.06 0.81 7.28 22.32 0.16 0.97 16 20 F -0.14 -2.17 17.26 44.97 0.78 -1.39 16 21 C -0.10 -1.37 9.98 22.37 0.22 -1.14 16 22 C 0.03 0.54 7.30 22.45 0.16 0.70 16 23 F -0.13 -2.13 16.80 44.97 0.76 -1.37 16 24 C 0.23 4.11 6.77 38.68 0.26 4.37 16 25 N -0.85 -14.34 8.44 -50.75 -0.43 -14.77 16 26 C -0.12 -3.27 5.25 30.67 0.16 -3.11 16 27 C 0.14 5.28 6.52 86.36 0.56 5.84 16 28 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.05 2.82 5.96 -2.39 -0.01 2.80 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.41 5.94 5.71 -92.71 -0.53 5.41 16 37 H 0.16 1.59 6.45 -2.91 -0.02 1.57 16 38 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.41 5.32 8.57 -92.71 -0.79 4.53 16 40 H 0.42 8.12 6.11 -92.71 -0.57 7.55 16 41 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.09 1.80 7.15 -2.39 -0.02 1.78 16 43 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 44 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 Total: -1.00 -66.12 362.51 2.54 -63.58 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -0.81 Total: 18.20 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 4.56 Total: 6.73 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -4.72 Total: -117.12 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.06 Total: -15.37 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 1.53 Total: -2.76 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -66.12 2.54 -63.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627909950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.718 kcal (2) G-P(sol) polarization free energy of solvation -66.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds