Wall clock time and date at job start Tue Mar 31 2020 22:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81403 * 102.99974 * 2 1 4 4 C 1.50694 * 109.47239 * 179.97438 * 3 2 1 5 5 N 1.30721 * 125.52863 * 89.97498 * 4 3 2 6 6 N 1.40438 * 106.79086 * 180.02562 * 5 4 3 7 7 H 0.97006 * 126.81729 * 180.02562 * 6 5 4 8 8 C 1.34428 * 106.36089 * 359.97438 * 6 5 4 9 9 C 1.50692 * 125.96404 * 179.97438 * 8 6 5 10 10 N 1.46502 * 109.47120 * 95.00629 * 9 8 6 11 11 C 1.34772 * 120.00424 * 180.02562 * 10 9 8 12 12 O 1.21588 * 119.99921 * 5.07041 * 11 10 9 13 13 N 1.34776 * 119.99868 * 185.06863 * 11 10 9 14 14 C 1.46925 * 120.63544 * 354.96390 * 13 11 10 15 15 C 1.53188 * 108.89442 * 126.29468 * 14 13 11 16 16 C 1.53350 * 109.14976 * 54.58200 * 15 14 13 17 17 C 1.53048 * 109.60747 * 298.71267 * 16 15 14 18 18 H 1.09006 * 109.48873 * 301.42175 * 17 16 15 19 19 C 1.50692 * 109.49892 * 181.32556 * 17 16 15 20 20 H 1.08000 * 120.00040 * 0.15916 * 19 17 16 21 21 C 1.37880 * 120.00066 * 180.15809 * 19 17 16 22 22 N 1.31517 * 119.99650 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 120.00092 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47261 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47328 * 120.00100 * 23 21 19 26 26 H 1.48507 * 109.46589 * 240.00293 * 23 21 19 27 27 C 1.46927 * 120.62914 * 174.94018 * 13 11 10 28 28 N 1.30830 * 108.07203 * 0.24488 * 8 6 5 29 29 H 1.08994 * 109.46816 * 300.00179 * 1 2 3 30 30 H 1.08998 * 109.46768 * 60.00050 * 1 2 3 31 31 H 1.08993 * 109.46888 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47041 * 60.00075 * 3 2 1 33 33 H 1.09007 * 109.47097 * 299.99843 * 3 2 1 34 34 H 1.08998 * 109.47362 * 335.00553 * 9 8 6 35 35 H 1.09000 * 109.47688 * 215.00342 * 9 8 6 36 36 H 0.97004 * 119.99408 * 359.97438 * 10 9 8 37 37 H 1.09000 * 109.58338 * 246.15873 * 14 13 11 38 38 H 1.09003 * 109.58342 * 6.43796 * 14 13 11 39 39 H 1.09005 * 109.49489 * 174.65811 * 15 14 13 40 40 H 1.09002 * 109.50067 * 294.75474 * 15 14 13 41 41 H 1.09002 * 109.42205 * 178.67704 * 16 15 14 42 42 H 1.08998 * 109.42514 * 58.74811 * 16 15 14 43 43 H 0.97005 * 119.99431 * 180.02562 * 22 21 19 44 44 H 1.09007 * 109.58513 * 353.41629 * 27 13 11 45 45 H 1.08994 * 109.59202 * 113.83968 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7194 1.9374 0.0006 5 7 4.4747 2.0225 -1.0629 6 7 5.7961 2.1720 -0.6112 7 1 6.5912 2.2621 -1.1595 8 6 5.7400 2.1667 0.7319 9 6 6.9140 2.2995 1.6672 10 7 7.0663 3.7015 2.0638 11 6 8.0583 4.0608 2.9025 12 8 8.8818 3.2395 3.2571 13 7 8.1374 5.3303 3.3481 14 6 7.2176 6.3592 2.8442 15 6 6.5307 7.0363 4.0344 16 6 7.6000 7.5630 4.9993 17 6 8.4394 6.3952 5.5227 18 1 7.7908 5.6776 6.0252 19 6 9.4681 6.9115 6.4954 20 1 9.5169 7.9667 6.7203 21 6 10.3470 6.0367 7.0983 22 7 10.2878 4.7518 6.8240 23 14 11.6217 6.6766 8.3046 24 1 11.4810 8.1488 8.4389 25 1 11.4157 6.0363 9.6284 26 1 12.9822 6.3534 7.8046 27 6 9.1448 5.7115 4.3473 28 7 4.4888 2.0203 1.0853 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8032 2.2371 0.8900 33 1 1.8032 2.2372 -0.8901 34 1 7.8202 1.9641 1.1628 35 1 6.7439 1.6878 2.5532 36 1 6.4536 4.3715 1.7221 37 1 7.7764 7.1014 2.2741 38 1 6.4666 5.8962 2.2040 39 1 5.9180 7.8644 3.6779 40 1 5.9002 6.3125 4.5507 41 1 7.1164 8.0665 5.8364 42 1 8.2454 8.2679 4.4753 43 1 10.9059 4.1364 7.2484 44 1 9.6640 4.8207 4.7010 45 1 9.8608 6.4008 3.8999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649982299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:50 Heat of formation + Delta-G solvation = 61.651635 kcal Electronic energy + Delta-G solvation = -26786.754329 eV Core-core repulsion = 22967.563581 eV Total energy + Delta-G solvation = -3819.190748 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.58779 -39.78253 -37.00152 -35.03076 -33.68693 -33.28099 -32.08760 -31.62678 -29.86295 -29.60911 -28.80491 -27.08510 -25.06534 -24.14522 -21.98214 -21.79448 -20.99891 -20.22726 -19.08053 -18.31478 -17.55210 -16.81390 -16.36569 -16.13253 -15.57185 -15.15746 -14.98560 -14.65328 -14.45465 -14.20077 -14.15357 -13.77455 -13.65775 -13.50323 -13.43068 -13.06481 -12.78272 -12.65044 -12.51428 -12.32436 -12.02900 -11.92409 -11.00751 -10.92184 -10.71908 -10.50364 -10.42911 -10.42243 -10.33015 -10.23653 -9.94946 -9.89858 -9.53195 -9.12587 -8.99622 -8.93842 -8.42515 -8.04347 -7.70665 -5.98729 -4.07424 0.76930 1.32179 2.08447 2.18449 2.60736 3.18783 3.31451 3.39456 3.42242 3.47483 3.73461 4.06796 4.28583 4.31987 4.44987 4.73080 4.75029 4.80548 4.93105 5.22170 5.29489 5.30965 5.31486 5.45667 5.49927 5.60468 5.78625 5.91439 5.94665 6.13460 6.29233 6.48619 6.55329 6.61483 6.63936 6.77975 6.97085 7.01499 7.29715 7.41644 7.66660 7.72541 7.91363 8.04873 8.40377 8.46686 8.96112 9.12074 9.58186 11.06494 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020482 B = 0.002103 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.694175 B =13309.107035 C =13457.817283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.228 6.228 3 C 0.004 3.996 4 C 0.237 3.763 5 N -0.291 5.291 6 N -0.467 5.467 7 H 0.445 0.555 8 C 0.280 3.720 9 C 0.220 3.780 10 N -0.754 5.754 11 C 0.706 3.294 12 O -0.579 6.579 13 N -0.619 5.619 14 C 0.116 3.884 15 C -0.134 4.134 16 C -0.109 4.109 17 C 0.039 3.961 18 H 0.029 0.971 19 C -0.520 4.520 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.879 5.879 23 Si 0.892 3.108 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.129 3.871 28 N -0.508 5.508 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.394 0.606 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.263 0.737 44 H 0.124 0.876 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.447 -4.396 -17.201 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.004 6.004 3 C -0.146 4.146 4 C -0.046 4.046 5 N -0.122 5.122 6 N -0.186 5.186 7 H 0.292 0.708 8 C 0.000 4.000 9 C 0.093 3.907 10 N -0.416 5.416 11 C 0.407 3.593 12 O -0.456 6.456 13 N -0.355 5.355 14 C -0.009 4.009 15 C -0.172 4.172 16 C -0.147 4.147 17 C 0.020 3.980 18 H 0.047 0.953 19 C -0.559 4.559 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.516 5.516 23 Si 0.720 3.280 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.009 3.991 28 N -0.237 5.237 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.230 0.770 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.142 0.858 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.498 -6.095 -17.224 23.959 hybrid contribution 0.120 1.746 0.127 1.755 sum -15.378 -4.349 -17.097 23.403 Atomic orbital electron populations 1.23451 0.93917 1.06871 1.05220 1.87277 1.07150 1.07947 1.98054 1.21435 0.88829 0.97129 1.07214 1.23093 0.96083 0.99315 0.86146 1.78019 0.87309 1.25037 1.21863 1.48072 1.08535 1.55569 1.06449 0.70817 1.24399 0.95024 0.96630 0.83912 1.19415 0.90352 0.84948 0.96002 1.45180 1.35123 1.07998 1.53285 1.15802 0.81224 0.83333 0.78922 1.90946 1.42039 1.50487 1.62100 1.47789 1.36928 1.05983 1.44784 1.21500 0.92128 0.91185 0.96056 1.22005 0.98671 0.99568 0.96992 1.21671 0.96320 0.99614 0.97114 1.19000 0.94347 0.92260 0.92442 0.95255 1.21102 1.16341 0.93987 1.24463 0.92317 1.25062 0.97531 0.94892 0.96599 1.69898 1.37224 1.01840 1.42676 0.86540 0.81469 0.78964 0.81053 1.19829 1.21019 1.20990 1.22237 0.88404 1.02691 0.85801 1.70408 0.99997 1.22853 1.30434 0.90059 0.90277 0.87716 0.86947 0.87571 0.89068 0.87588 0.76961 0.92046 0.92403 0.92309 0.92026 0.93014 0.93204 0.92683 0.85831 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 10.76 101.05 1.09 0.43 16 2 S -0.23 -2.12 22.36 -107.50 -2.40 -4.52 16 3 C 0.00 0.03 6.57 36.00 0.24 0.27 16 4 C 0.24 2.75 7.40 -156.85 -1.16 1.59 16 5 N -0.29 -3.34 12.80 32.42 0.41 -2.92 16 6 N -0.47 -4.47 7.45 32.62 0.24 -4.22 16 7 H 0.45 2.83 8.96 -182.33 -1.63 1.20 16 8 C 0.28 3.14 7.60 -155.70 -1.18 1.96 16 9 C 0.22 2.64 6.30 -5.20 -0.03 2.61 16 10 N -0.75 -10.58 5.46 -66.42 -0.36 -10.94 16 11 C 0.71 13.64 8.30 -86.92 -0.72 12.92 16 12 O -0.58 -13.68 15.79 5.29 0.08 -13.59 16 13 N -0.62 -12.04 2.97 -178.50 -0.53 -12.57 16 14 C 0.12 1.73 6.42 -3.71 -0.02 1.71 16 15 C -0.13 -2.11 6.11 -26.45 -0.16 -2.27 16 16 C -0.11 -2.13 5.11 -26.53 -0.14 -2.27 16 17 C 0.04 0.94 2.25 -91.65 -0.21 0.74 16 18 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.52 -13.93 8.56 -34.44 -0.29 -14.23 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 21 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 22 N -0.88 -25.43 11.39 55.43 0.63 -24.80 16 23 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.13 3.07 5.39 -3.71 -0.02 3.05 16 28 N -0.51 -6.55 11.19 -8.16 -0.09 -6.64 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.11 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.11 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.39 4.80 5.92 -40.82 -0.24 4.56 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.70 5.56 -51.93 -0.29 0.41 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.12 3.46 5.15 -51.92 -0.27 3.19 16 45 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 381.97 15.07 5.76 5.76 Total: -1.00 -33.97 381.97 -11.89 -45.85 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.89 Total: 4.39 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -2.71 Total: 8.12 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.30 Total: -62.10 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.08 Total: -13.59 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -2.40 Total: -4.52 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.97 -11.89 -45.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649982299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.505 kcal (2) G-P(sol) polarization free energy of solvation -33.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds