Wall clock time and date at job start Tue Mar 31 2020 22:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81403 * 102.99974 * 2 1 4 4 C 1.50694 * 109.47239 * 179.97438 * 3 2 1 5 5 N 1.30721 * 125.52863 * 89.97498 * 4 3 2 6 6 N 1.40438 * 106.79086 * 180.02562 * 5 4 3 7 7 H 0.97006 * 126.81729 * 180.02562 * 6 5 4 8 8 C 1.34428 * 106.36089 * 359.97438 * 6 5 4 9 9 C 1.50692 * 125.96404 * 179.97438 * 8 6 5 10 10 N 1.46502 * 109.47120 * 95.00629 * 9 8 6 11 11 C 1.34772 * 120.00424 * 180.02562 * 10 9 8 12 12 O 1.21588 * 119.99921 * 5.07041 * 11 10 9 13 13 N 1.34776 * 119.99868 * 185.06863 * 11 10 9 14 14 C 1.46925 * 120.63544 * 354.96390 * 13 11 10 15 15 C 1.53188 * 108.89442 * 126.29468 * 14 13 11 16 16 C 1.53350 * 109.14976 * 54.58200 * 15 14 13 17 17 C 1.53048 * 109.60747 * 298.71267 * 16 15 14 18 18 H 1.09006 * 109.48873 * 301.42175 * 17 16 15 19 19 C 1.50692 * 109.49892 * 181.32556 * 17 16 15 20 20 H 1.08000 * 120.00040 * 0.15916 * 19 17 16 21 21 C 1.37880 * 120.00066 * 180.15809 * 19 17 16 22 22 N 1.31517 * 119.99650 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 120.00092 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47261 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47328 * 120.00100 * 23 21 19 26 26 H 1.48507 * 109.46589 * 240.00293 * 23 21 19 27 27 C 1.46927 * 120.62914 * 174.94018 * 13 11 10 28 28 N 1.30830 * 108.07203 * 0.24488 * 8 6 5 29 29 H 1.08994 * 109.46816 * 300.00179 * 1 2 3 30 30 H 1.08998 * 109.46768 * 60.00050 * 1 2 3 31 31 H 1.08993 * 109.46888 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47041 * 60.00075 * 3 2 1 33 33 H 1.09007 * 109.47097 * 299.99843 * 3 2 1 34 34 H 1.08998 * 109.47362 * 335.00553 * 9 8 6 35 35 H 1.09000 * 109.47688 * 215.00342 * 9 8 6 36 36 H 0.97004 * 119.99408 * 359.97438 * 10 9 8 37 37 H 1.09000 * 109.58338 * 246.15873 * 14 13 11 38 38 H 1.09003 * 109.58342 * 6.43796 * 14 13 11 39 39 H 1.09005 * 109.49489 * 174.65811 * 15 14 13 40 40 H 1.09002 * 109.50067 * 294.75474 * 15 14 13 41 41 H 1.09002 * 109.42205 * 178.67704 * 16 15 14 42 42 H 1.08998 * 109.42514 * 58.74811 * 16 15 14 43 43 H 0.97005 * 119.99431 * 180.02562 * 22 21 19 44 44 H 1.09007 * 109.58513 * 353.41629 * 27 13 11 45 45 H 1.08994 * 109.59202 * 113.83968 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7194 1.9374 0.0006 5 7 4.4747 2.0225 -1.0629 6 7 5.7961 2.1720 -0.6112 7 1 6.5912 2.2621 -1.1595 8 6 5.7400 2.1667 0.7319 9 6 6.9140 2.2995 1.6672 10 7 7.0663 3.7015 2.0638 11 6 8.0583 4.0608 2.9025 12 8 8.8818 3.2395 3.2571 13 7 8.1374 5.3303 3.3481 14 6 7.2176 6.3592 2.8442 15 6 6.5307 7.0363 4.0344 16 6 7.6000 7.5630 4.9993 17 6 8.4394 6.3952 5.5227 18 1 7.7908 5.6776 6.0252 19 6 9.4681 6.9115 6.4954 20 1 9.5169 7.9667 6.7203 21 6 10.3470 6.0367 7.0983 22 7 10.2878 4.7518 6.8240 23 14 11.6217 6.6766 8.3046 24 1 11.4810 8.1488 8.4389 25 1 11.4157 6.0363 9.6284 26 1 12.9822 6.3534 7.8046 27 6 9.1448 5.7115 4.3473 28 7 4.4888 2.0203 1.0853 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8032 2.2371 0.8900 33 1 1.8032 2.2372 -0.8901 34 1 7.8202 1.9641 1.1628 35 1 6.7439 1.6878 2.5532 36 1 6.4536 4.3715 1.7221 37 1 7.7764 7.1014 2.2741 38 1 6.4666 5.8962 2.2040 39 1 5.9180 7.8644 3.6779 40 1 5.9002 6.3125 4.5507 41 1 7.1164 8.0665 5.8364 42 1 8.2454 8.2679 4.4753 43 1 10.9059 4.1364 7.2484 44 1 9.6640 4.8207 4.7010 45 1 9.8608 6.4008 3.8999 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649982299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:49 Heat of formation + Delta-G solvation = 38.698861 kcal Electronic energy + Delta-G solvation = -26787.749636 eV Core-core repulsion = 22967.563581 eV Total energy + Delta-G solvation = -3820.186055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.45527 -41.28742 -38.56228 -36.31111 -35.26815 -34.43572 -33.50626 -32.82981 -31.50037 -30.31021 -29.42815 -28.19876 -26.92626 -25.68315 -23.46355 -22.81553 -21.87824 -21.76287 -20.52334 -19.46350 -18.85838 -18.19422 -17.66082 -17.33100 -16.71697 -16.51437 -16.47541 -15.92536 -15.46105 -15.21147 -15.15051 -15.00069 -14.77846 -14.62438 -14.54267 -14.32654 -14.15815 -13.69960 -13.58629 -13.51458 -13.31535 -13.12069 -12.89249 -12.64617 -12.25688 -12.19854 -11.86263 -11.62460 -11.43900 -11.33468 -11.30365 -11.10527 -10.95197 -10.83492 -10.65782 -10.49651 -10.31610 -9.29032 -8.72408 -8.07925 -6.24462 0.01128 0.53713 1.35923 1.41832 1.43725 1.51445 1.55297 1.70752 2.00944 2.22407 2.44190 2.61264 3.00726 3.21540 3.27479 3.48953 4.01849 4.07669 4.16566 4.26562 4.30141 4.40150 4.40284 4.44198 4.48587 4.61459 4.73395 4.81141 4.85899 4.92857 4.95438 5.08317 5.11954 5.23907 5.27074 5.30496 5.36000 5.58940 5.63296 5.88228 5.91266 5.97777 6.13274 6.38226 6.81531 6.88409 7.03912 7.45194 7.60622 8.95597 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020482 B = 0.002103 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.694175 B =13309.107035 C =13457.817283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.294 6.294 3 C 0.013 3.987 4 C 0.229 3.771 5 N -0.301 5.301 6 N -0.451 5.451 7 H 0.459 0.541 8 C 0.282 3.718 9 C 0.224 3.776 10 N -0.731 5.731 11 C 0.703 3.297 12 O -0.629 6.629 13 N -0.624 5.624 14 C 0.111 3.889 15 C -0.126 4.126 16 C -0.105 4.105 17 C 0.037 3.963 18 H -0.014 1.014 19 C -0.534 4.534 20 H 0.062 0.938 21 C 0.009 3.991 22 N -0.914 5.914 23 Si 0.957 3.043 24 H -0.261 1.261 25 H -0.284 1.284 26 H -0.283 1.283 27 C 0.144 3.856 28 N -0.534 5.534 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.407 0.593 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.259 0.741 44 H 0.078 0.922 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.251 -2.741 -18.958 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.071 6.071 3 C -0.136 4.136 4 C -0.054 4.054 5 N -0.132 5.132 6 N -0.172 5.172 7 H 0.309 0.691 8 C 0.003 3.997 9 C 0.097 3.903 10 N -0.392 5.392 11 C 0.404 3.596 12 O -0.510 6.510 13 N -0.360 5.360 14 C -0.011 4.011 15 C -0.164 4.164 16 C -0.142 4.142 17 C 0.018 3.982 18 H 0.004 0.996 19 C -0.572 4.572 20 H 0.080 0.920 21 C -0.190 4.190 22 N -0.552 5.552 23 Si 0.782 3.218 24 H -0.185 1.185 25 H -0.210 1.210 26 H -0.209 1.209 27 C 0.022 3.978 28 N -0.264 5.264 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.246 0.754 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.354 -4.404 -19.038 26.135 hybrid contribution 0.603 1.198 0.638 1.485 sum -16.752 -3.207 -18.400 25.089 Atomic orbital electron populations 1.23502 0.89770 1.07840 1.06534 1.87471 1.11812 1.09534 1.98246 1.21515 0.87277 0.96254 1.08595 1.23578 0.97255 0.98890 0.85638 1.77992 0.87808 1.25284 1.22131 1.47991 1.08729 1.54473 1.05992 0.69119 1.23996 0.94326 0.97109 0.84287 1.19398 0.91576 0.83376 0.95912 1.44857 1.33521 1.09229 1.51629 1.15946 0.81620 0.82805 0.79246 1.90912 1.44206 1.51893 1.63998 1.47660 1.37021 1.07232 1.44090 1.21831 0.92262 0.90705 0.96312 1.21961 0.97638 1.00687 0.96156 1.21557 0.96874 0.97652 0.98138 1.18930 0.93898 0.93190 0.92209 0.99579 1.21533 1.16697 0.94117 1.24869 0.91999 1.25887 0.99676 0.95001 0.98458 1.70092 1.38147 1.03109 1.43880 0.85526 0.78768 0.78903 0.78581 1.18497 1.20997 1.20866 1.21609 0.89127 1.00352 0.86760 1.70385 1.00779 1.23629 1.31574 0.89027 0.88644 0.86881 0.86060 0.85601 0.87348 0.89077 0.75446 0.89977 0.88819 0.87913 0.93235 0.93102 0.92314 0.93137 0.90400 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.76 113.37 1.22 0.32 16 2 S -0.29 -5.19 22.36 -56.49 -1.26 -6.46 16 3 C 0.01 0.21 6.57 71.23 0.47 0.68 16 4 C 0.23 4.99 7.40 138.63 1.03 6.01 16 5 N -0.30 -6.38 12.80 -51.33 -0.66 -7.03 16 6 N -0.45 -7.80 7.45 -50.71 -0.38 -8.18 16 7 H 0.46 4.88 8.96 -213.09 -1.91 2.97 16 8 C 0.28 5.97 7.60 138.22 1.05 7.02 16 9 C 0.22 5.23 6.30 85.63 0.54 5.77 16 10 N -0.73 -19.63 5.46 -482.31 -2.63 -22.26 16 11 C 0.70 27.30 8.30 179.06 1.49 28.78 16 12 O -0.63 -30.90 15.79 -3.99 -0.06 -30.96 16 13 N -0.62 -24.14 2.97 -836.92 -2.49 -26.63 16 14 C 0.11 3.01 6.42 86.36 0.55 3.56 16 15 C -0.13 -3.61 6.11 30.77 0.19 -3.42 16 16 C -0.10 -3.94 5.11 30.73 0.16 -3.79 16 17 C 0.04 1.85 2.25 -11.46 -0.03 1.82 16 18 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 19 C -0.53 -29.15 8.56 25.60 0.22 -28.93 16 20 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 21 C 0.01 0.52 5.30 84.66 0.45 0.97 16 22 N -0.91 -55.30 11.39 21.45 0.24 -55.05 16 23 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 27 C 0.14 7.07 5.39 86.36 0.47 7.54 16 28 N -0.53 -13.16 11.19 -179.73 -2.01 -15.17 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.41 8.83 5.92 -92.70 -0.55 8.28 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.09 1.87 5.56 -2.39 -0.01 1.86 16 39 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 44 H 0.08 4.60 5.15 -2.38 -0.01 4.59 16 45 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -78.39 381.97 -0.86 -79.25 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -1.43 Total: 20.00 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 7.80 Total: 26.32 kcal Atomic # 7 Polarization: -126.40 SS G_CDS: -7.92 Total: -134.32 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.06 Total: -30.96 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -5.19 SS G_CDS: -1.26 Total: -6.46 kcal Total: -78.39 -0.86 -79.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649982299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.950 kcal (2) G-P(sol) polarization free energy of solvation -78.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds