Wall clock time and date at job start Tue Mar 31 2020 22:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40290 * 126.84725 * 2 1 4 4 N 1.28737 * 108.18403 * 180.02562 * 3 2 1 5 5 C 1.33280 * 109.98853 * 359.72572 * 4 3 2 6 6 C 1.35820 * 108.86688 * 0.44886 * 5 4 3 7 7 N 1.39465 * 126.67482 * 179.82872 * 6 5 4 8 8 C 1.34780 * 119.99983 * 359.68709 * 7 6 5 9 9 O 1.21682 * 119.99971 * 359.97438 * 8 7 6 10 10 C 1.46883 * 120.00039 * 179.97438 * 8 7 6 11 11 C 1.36399 * 126.76892 * 0.02562 * 10 8 7 12 12 N 1.35482 * 109.76338 * 179.97438 * 11 10 8 13 13 C 1.46493 * 124.78381 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02494 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.37963 * 110.42531 * 0.23121 * 12 11 10 24 24 C 1.39125 * 133.17974 * 180.38842 * 23 12 11 25 25 C 1.37769 * 119.92951 * 179.63340 * 24 23 12 26 26 C 1.38758 * 120.63098 * 359.74985 * 25 24 23 27 27 C 1.37755 * 120.30276 * 0.02809 * 26 25 24 28 28 C 1.39266 * 119.67122 * 359.97279 * 27 26 25 29 29 H 1.09004 * 109.47483 * 270.00144 * 1 2 3 30 30 H 1.09006 * 109.46929 * 30.00103 * 1 2 3 31 31 H 1.08999 * 109.47550 * 149.99943 * 1 2 3 32 32 H 1.08005 * 125.56483 * 180.28010 * 5 4 3 33 33 H 0.97001 * 120.00118 * 179.68257 * 7 6 5 34 34 H 1.08000 * 125.11327 * 0.02562 * 11 10 8 35 35 H 1.09004 * 109.46794 * 145.02593 * 13 12 11 36 36 H 1.09000 * 109.47559 * 25.03069 * 13 12 11 37 37 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 38 38 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 39 39 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.03960 * 359.40985 * 24 23 12 41 41 H 1.07993 * 119.68512 * 179.73585 * 25 24 23 42 42 H 1.08007 * 119.84520 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.16029 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3063 1.1227 0.0000 4 7 3.5259 0.7107 -0.0005 5 6 3.5568 -0.6217 0.0051 6 6 2.2821 -1.0906 -0.0006 7 7 1.8864 -2.4279 -0.0008 8 6 2.8145 -3.4053 -0.0014 9 8 3.9976 -3.1208 -0.0022 10 6 2.3978 -4.8138 -0.0010 11 6 1.1184 -5.2867 -0.0007 12 7 1.1308 -6.6415 -0.0010 13 6 -0.0646 -7.4882 -0.0003 14 6 -0.4074 -7.8854 1.4369 15 6 -1.6368 -8.7570 1.4376 16 1 -2.1247 -9.0033 0.5061 17 6 -2.1352 -9.2451 2.6270 18 7 -1.5409 -8.9454 3.7612 19 14 -3.6546 -10.3316 2.6271 20 1 -3.2461 -11.7538 2.5017 21 1 -4.3995 -10.1408 3.8975 22 1 -4.5261 -9.9642 1.4822 23 6 2.4281 -7.1111 0.0036 24 6 2.9779 -8.3891 -0.0017 25 6 4.3464 -8.5486 -0.0022 26 6 5.1868 -7.4445 -0.0028 27 6 4.6615 -6.1710 -0.0022 28 6 3.2800 -5.9952 -0.0017 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 4.4496 -1.2294 0.0103 33 1 0.9433 -2.6547 -0.0005 34 1 0.2294 -4.6735 -0.0010 35 1 0.1252 -8.3852 -0.5897 36 1 -0.8997 -6.9383 -0.4342 37 1 -0.5972 -6.9884 2.0264 38 1 0.4276 -8.4354 1.8709 39 1 -1.8918 -9.2885 4.5980 40 1 2.3328 -9.2552 -0.0017 41 1 4.7690 -9.5424 -0.0020 42 1 6.2578 -7.5842 -0.0028 43 1 5.3178 -5.3133 -0.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652732917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:19 Heat of formation + Delta-G solvation = 125.525613 kcal Electronic energy + Delta-G solvation = -27999.026987 eV Core-core repulsion = 24047.162071 eV Total energy + Delta-G solvation = -3951.864916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.23754 -41.42537 -39.46877 -37.05384 -35.57250 -34.25986 -34.02038 -32.57215 -30.62544 -30.08229 -29.04154 -28.43185 -27.82251 -25.45669 -23.74785 -22.75627 -22.46613 -21.98255 -21.32581 -20.54229 -19.64522 -18.40317 -17.34287 -16.91641 -16.49041 -16.45292 -16.13792 -15.42630 -15.36614 -15.20592 -14.78213 -14.45780 -14.24121 -14.17263 -13.77046 -13.54675 -13.49508 -13.25847 -13.06634 -12.65381 -12.52715 -11.95230 -11.94179 -11.56999 -11.56127 -11.33816 -11.18342 -11.16543 -10.84509 -10.77592 -10.44553 -10.12752 -10.05581 -9.94659 -9.56815 -9.40141 -8.66083 -8.53963 -8.13313 -7.54648 -6.29766 -4.36955 0.90200 1.24872 1.66238 1.70883 2.08036 2.59056 2.74499 2.93764 3.13270 3.21362 3.22405 3.35708 4.10022 4.14012 4.21097 4.47918 4.57878 4.69014 4.81806 4.85424 4.95232 5.00387 5.06667 5.19344 5.26339 5.32750 5.37894 5.43667 5.54652 5.69407 5.79223 5.82957 5.85493 6.19470 6.21190 6.26652 6.47864 6.56932 6.71047 6.76847 6.84824 6.98881 7.15620 7.22407 7.36218 7.37958 7.65637 7.89033 7.98188 8.15026 8.68714 9.29858 10.80841 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010162 B = 0.002990 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.577347 B = 9362.111642 C =11691.728445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.392 5.392 3 N -0.081 5.081 4 N -0.225 5.225 5 C -0.087 4.087 6 C 0.291 3.709 7 N -0.646 5.646 8 C 0.610 3.390 9 O -0.511 6.511 10 C -0.259 4.259 11 C 0.131 3.869 12 N -0.444 5.444 13 C 0.099 3.901 14 C 0.012 3.988 15 C -0.534 4.534 16 H 0.060 0.940 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.897 3.103 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.092 3.908 24 C -0.110 4.110 25 C -0.108 4.108 26 C -0.140 4.140 27 C -0.075 4.075 28 C -0.057 4.057 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.209 0.791 33 H 0.411 0.589 34 H 0.171 0.829 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.023 0.977 38 H 0.026 0.974 39 H 0.265 0.735 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.284 8.889 -9.135 13.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.186 5.186 3 N -0.060 5.060 4 N -0.094 5.094 5 C -0.247 4.247 6 C 0.063 3.937 7 N -0.295 5.295 8 C 0.402 3.598 9 O -0.385 6.385 10 C -0.270 4.270 11 C -0.006 4.006 12 N -0.120 5.120 13 C -0.020 4.020 14 C -0.025 4.025 15 C -0.573 4.573 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.524 5.524 19 Si 0.725 3.275 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.013 4.013 24 C -0.130 4.130 25 C -0.127 4.127 26 C -0.159 4.159 27 C -0.093 4.093 28 C -0.061 4.061 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.225 0.775 33 H 0.248 0.752 34 H 0.188 0.812 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.041 0.959 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.856 10.290 -8.950 14.477 hybrid contribution -1.997 -1.907 0.278 2.775 sum 2.860 8.383 -8.672 12.396 Atomic orbital electron populations 1.22042 0.73556 1.05237 1.04430 1.50555 1.08190 1.04365 1.55534 1.82035 0.93795 1.03954 1.26251 1.74219 1.12768 1.11734 1.10669 1.23583 0.96751 0.90298 1.14111 1.18826 0.91494 0.81304 1.02118 1.42860 1.11469 1.01107 1.74095 1.17247 0.84562 0.83404 0.74611 1.90685 1.16736 1.82644 1.48470 1.19282 0.92594 0.90247 1.24922 1.22044 0.97537 0.84298 0.96750 1.44436 1.06455 1.05292 1.55849 1.22547 0.82624 0.93405 1.03439 1.19458 0.97585 0.97476 0.88011 1.20957 1.11355 1.31680 0.93263 0.92224 1.25002 0.97349 0.96181 0.95456 1.69960 1.40160 1.44349 0.97920 0.86511 0.82553 0.80813 0.77672 1.20401 1.21008 1.19720 1.18258 0.83182 0.94797 1.05056 1.20176 0.95286 0.93966 1.03566 1.20800 0.92235 0.98839 1.00842 1.20929 0.99501 0.92134 1.03322 1.20567 0.92751 0.97407 0.98614 1.18583 0.92961 0.90037 1.04481 0.89538 0.88022 0.89453 0.77480 0.75248 0.81164 0.89883 0.89713 0.95870 0.95563 0.92530 0.85650 0.85785 0.86055 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 11.39 59.84 0.68 1.18 16 2 N -0.39 -4.25 4.09 -66.99 -0.27 -4.53 16 3 N -0.08 -1.13 13.81 60.35 0.83 -0.30 16 4 N -0.23 -3.42 12.32 30.24 0.37 -3.05 16 5 C -0.09 -1.24 10.76 -17.79 -0.19 -1.44 16 6 C 0.29 3.52 7.75 -152.35 -1.18 2.34 16 7 N -0.65 -6.67 5.41 -12.42 -0.07 -6.73 16 8 C 0.61 8.13 7.76 -12.76 -0.10 8.03 16 9 O -0.51 -8.03 13.32 5.21 0.07 -7.97 16 10 C -0.26 -3.60 6.27 -103.31 -0.65 -4.25 16 11 C 0.13 1.65 10.75 -16.60 -0.18 1.47 16 12 N -0.44 -6.78 2.74 -114.22 -0.31 -7.09 16 13 C 0.10 1.62 5.89 -4.05 -0.02 1.60 16 14 C 0.01 0.27 5.30 -27.88 -0.15 0.12 16 15 C -0.53 -13.14 9.11 -34.44 -0.31 -13.45 16 16 H 0.06 1.39 7.74 -52.49 -0.41 0.99 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -24.52 13.29 55.43 0.74 -23.79 16 19 Si 0.90 19.66 29.54 -169.99 -5.02 14.64 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 C 0.09 1.47 6.79 -83.97 -0.57 0.90 16 24 C -0.11 -1.66 9.97 -39.42 -0.39 -2.05 16 25 C -0.11 -1.41 10.01 -39.56 -0.40 -1.81 16 26 C -0.14 -1.81 10.03 -39.57 -0.40 -2.20 16 27 C -0.07 -1.09 9.85 -39.38 -0.39 -1.48 16 28 C -0.06 -0.89 6.27 -104.95 -0.66 -1.55 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.27 7.65 -51.93 -0.40 -0.13 16 32 H 0.21 3.03 5.82 -52.48 -0.31 2.73 16 33 H 0.41 2.78 7.04 -40.82 -0.29 2.50 16 34 H 0.17 1.38 7.38 -52.49 -0.39 0.99 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.21 8.11 -51.93 -0.42 0.79 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 43 H 0.13 1.83 7.45 -52.49 -0.39 1.44 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -32.74 373.57 -8.15 -40.88 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.11 Total: 3.34 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -5.00 Total: -11.04 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 1.29 Total: -45.49 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.07 Total: -7.97 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.74 -8.15 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652732917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.409 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds