Wall clock time and date at job start Tue Mar 31 2020 22:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40290 * 126.84725 * 2 1 4 4 N 1.28737 * 108.18403 * 180.02562 * 3 2 1 5 5 C 1.33280 * 109.98853 * 359.72572 * 4 3 2 6 6 C 1.35820 * 108.86688 * 0.44886 * 5 4 3 7 7 N 1.39465 * 126.67482 * 179.82872 * 6 5 4 8 8 C 1.34780 * 119.99983 * 359.68709 * 7 6 5 9 9 O 1.21682 * 119.99971 * 359.97438 * 8 7 6 10 10 C 1.46883 * 120.00039 * 179.97438 * 8 7 6 11 11 C 1.36399 * 126.76892 * 0.02562 * 10 8 7 12 12 N 1.35482 * 109.76338 * 179.97438 * 11 10 8 13 13 C 1.46493 * 124.78381 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02494 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.37963 * 110.42531 * 0.23121 * 12 11 10 24 24 C 1.39125 * 133.17974 * 180.38842 * 23 12 11 25 25 C 1.37769 * 119.92951 * 179.63340 * 24 23 12 26 26 C 1.38758 * 120.63098 * 359.74985 * 25 24 23 27 27 C 1.37755 * 120.30276 * 0.02809 * 26 25 24 28 28 C 1.39266 * 119.67122 * 359.97279 * 27 26 25 29 29 H 1.09004 * 109.47483 * 270.00144 * 1 2 3 30 30 H 1.09006 * 109.46929 * 30.00103 * 1 2 3 31 31 H 1.08999 * 109.47550 * 149.99943 * 1 2 3 32 32 H 1.08005 * 125.56483 * 180.28010 * 5 4 3 33 33 H 0.97001 * 120.00118 * 179.68257 * 7 6 5 34 34 H 1.08000 * 125.11327 * 0.02562 * 11 10 8 35 35 H 1.09004 * 109.46794 * 145.02593 * 13 12 11 36 36 H 1.09000 * 109.47559 * 25.03069 * 13 12 11 37 37 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 38 38 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 39 39 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.03960 * 359.40985 * 24 23 12 41 41 H 1.07993 * 119.68512 * 179.73585 * 25 24 23 42 42 H 1.08007 * 119.84520 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.16029 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3063 1.1227 0.0000 4 7 3.5259 0.7107 -0.0005 5 6 3.5568 -0.6217 0.0051 6 6 2.2821 -1.0906 -0.0006 7 7 1.8864 -2.4279 -0.0008 8 6 2.8145 -3.4053 -0.0014 9 8 3.9976 -3.1208 -0.0022 10 6 2.3978 -4.8138 -0.0010 11 6 1.1184 -5.2867 -0.0007 12 7 1.1308 -6.6415 -0.0010 13 6 -0.0646 -7.4882 -0.0003 14 6 -0.4074 -7.8854 1.4369 15 6 -1.6368 -8.7570 1.4376 16 1 -2.1247 -9.0033 0.5061 17 6 -2.1352 -9.2451 2.6270 18 7 -1.5409 -8.9454 3.7612 19 14 -3.6546 -10.3316 2.6271 20 1 -3.2461 -11.7538 2.5017 21 1 -4.3995 -10.1408 3.8975 22 1 -4.5261 -9.9642 1.4822 23 6 2.4281 -7.1111 0.0036 24 6 2.9779 -8.3891 -0.0017 25 6 4.3464 -8.5486 -0.0022 26 6 5.1868 -7.4445 -0.0028 27 6 4.6615 -6.1710 -0.0022 28 6 3.2800 -5.9952 -0.0017 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 4.4496 -1.2294 0.0103 33 1 0.9433 -2.6547 -0.0005 34 1 0.2294 -4.6735 -0.0010 35 1 0.1252 -8.3852 -0.5897 36 1 -0.8997 -6.9383 -0.4342 37 1 -0.5972 -6.9884 2.0264 38 1 0.4276 -8.4354 1.8709 39 1 -1.8918 -9.2885 4.5980 40 1 2.3328 -9.2552 -0.0017 41 1 4.7690 -9.5424 -0.0020 42 1 6.2578 -7.5842 -0.0028 43 1 5.3178 -5.3133 -0.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652732917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:18 Heat of formation + Delta-G solvation = 106.241178 kcal Electronic energy + Delta-G solvation = -27999.863223 eV Core-core repulsion = 24047.162071 eV Total energy + Delta-G solvation = -3952.701152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.21954 -42.51575 -40.51920 -38.15898 -36.55631 -35.84506 -34.89427 -34.08127 -31.95961 -31.10852 -30.28552 -29.58072 -28.51381 -26.99263 -24.90113 -23.97304 -23.52531 -23.22711 -22.31472 -21.76870 -20.70910 -19.31477 -18.72997 -18.24494 -17.67496 -17.35578 -17.16395 -16.67915 -16.55590 -16.39181 -16.12480 -15.52947 -15.44726 -15.17343 -14.97868 -14.61637 -14.42744 -14.27847 -14.17947 -13.79393 -13.65608 -13.46338 -12.95178 -12.90634 -12.81337 -12.57200 -12.56303 -12.36116 -12.12439 -12.03332 -11.91524 -11.66147 -11.39409 -11.20916 -10.79413 -10.63731 -10.58013 -9.55138 -9.22644 -8.67143 -8.24629 -6.37587 -0.11865 0.23188 0.62099 0.78136 0.99606 1.42254 1.43373 1.52372 1.53467 1.78014 1.97603 2.31236 2.39974 2.99465 3.10939 3.43326 3.59701 3.63577 3.70693 3.84883 3.97233 4.13673 4.21795 4.29828 4.32862 4.42515 4.46159 4.50916 4.56686 4.64498 4.70924 4.72603 4.73797 4.80506 5.12463 5.26174 5.37661 5.39920 5.52656 5.57871 5.62492 5.69279 5.71069 5.82455 6.03316 6.11784 6.23316 6.26740 6.79697 6.89311 7.14360 7.33821 8.86433 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010162 B = 0.002990 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.577347 B = 9362.111642 C =11691.728445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.376 5.376 3 N -0.101 5.101 4 N -0.253 5.253 5 C -0.107 4.107 6 C 0.295 3.705 7 N -0.625 5.625 8 C 0.613 3.387 9 O -0.540 6.540 10 C -0.270 4.270 11 C 0.144 3.856 12 N -0.455 5.455 13 C 0.117 3.883 14 C 0.020 3.980 15 C -0.539 4.539 16 H 0.075 0.925 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.962 3.038 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.256 1.256 23 C 0.067 3.933 24 C -0.130 4.130 25 C -0.106 4.106 26 C -0.135 4.135 27 C -0.091 4.091 28 C -0.079 4.079 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.198 0.802 33 H 0.431 0.569 34 H 0.219 0.781 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.001 0.999 38 H -0.012 1.012 39 H 0.263 0.737 40 H 0.122 0.878 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.266 8.652 -10.445 13.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.170 5.170 3 N -0.080 5.080 4 N -0.121 5.121 5 C -0.269 4.269 6 C 0.065 3.935 7 N -0.275 5.275 8 C 0.405 3.595 9 O -0.416 6.416 10 C -0.281 4.281 11 C 0.008 3.992 12 N -0.132 5.132 13 C -0.003 4.003 14 C -0.018 4.018 15 C -0.578 4.578 16 H 0.093 0.907 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.787 3.213 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.180 1.180 23 C -0.037 4.037 24 C -0.150 4.150 25 C -0.125 4.125 26 C -0.154 4.154 27 C -0.110 4.110 28 C -0.084 4.084 29 H 0.121 0.879 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.214 0.786 33 H 0.271 0.729 34 H 0.235 0.765 35 H 0.105 0.895 36 H 0.134 0.866 37 H 0.019 0.981 38 H 0.006 0.994 39 H 0.072 0.928 40 H 0.140 0.860 41 H 0.169 0.831 42 H 0.168 0.832 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.791 10.083 -10.286 14.672 hybrid contribution -1.343 -1.839 0.690 2.380 sum 1.448 8.243 -9.597 12.734 Atomic orbital electron populations 1.22617 0.70256 1.07602 1.06260 1.50826 1.09766 1.02984 1.53462 1.81925 0.93880 1.05221 1.26939 1.74185 1.13708 1.12278 1.11886 1.23558 0.97709 0.90293 1.15303 1.18673 0.91171 0.82067 1.01602 1.42527 1.12092 0.99839 1.73087 1.17182 0.84453 0.83618 0.74247 1.90685 1.18134 1.82995 1.49793 1.19338 0.92976 0.90108 1.25698 1.22757 0.98705 0.83506 0.94222 1.44366 1.05742 1.06150 1.56957 1.22195 0.84062 0.94577 0.99454 1.19256 0.95486 0.95650 0.91365 1.21475 1.11718 1.30985 0.93603 0.90727 1.25908 1.00405 0.97747 0.95277 1.70104 1.42112 1.46238 0.98579 0.85479 0.79118 0.78813 0.77854 1.20278 1.21442 1.17954 1.18535 0.83819 0.95318 1.06035 1.20387 0.96307 0.93764 1.04580 1.21150 0.91563 1.00280 0.99491 1.21278 1.01022 0.91370 1.01705 1.20744 0.92650 0.98206 0.99403 1.18945 0.93616 0.90878 1.04913 0.87893 0.86667 0.86239 0.78577 0.72905 0.76455 0.89469 0.86633 0.98103 0.99361 0.92802 0.86006 0.83073 0.83197 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 11.39 127.77 1.46 2.00 16 2 N -0.38 -7.43 4.09 -365.86 -1.50 -8.92 16 3 N -0.10 -2.75 13.81 37.02 0.51 -2.24 16 4 N -0.25 -7.80 12.32 -58.25 -0.72 -8.52 16 5 C -0.11 -3.10 10.76 83.91 0.90 -2.20 16 6 C 0.29 6.75 7.75 130.94 1.02 7.77 16 7 N -0.62 -11.55 5.41 -311.42 -1.68 -13.23 16 8 C 0.61 15.77 7.76 86.51 0.67 16.45 16 9 O -0.54 -17.18 13.32 -4.29 -0.06 -17.24 16 10 C -0.27 -7.22 6.27 -19.02 -0.12 -7.34 16 11 C 0.14 3.29 10.75 83.70 0.90 4.19 16 12 N -0.46 -13.30 2.74 -515.27 -1.41 -14.71 16 13 C 0.12 3.62 5.89 86.38 0.51 4.13 16 14 C 0.02 0.89 5.30 29.85 0.16 1.05 16 15 C -0.54 -26.06 9.11 25.60 0.23 -25.83 16 16 H 0.07 3.31 7.74 -2.91 -0.02 3.28 16 17 C 0.01 0.28 5.46 84.66 0.46 0.74 16 18 N -0.93 -52.34 13.29 21.45 0.28 -52.06 16 19 Si 0.96 39.73 29.54 68.60 2.03 41.75 16 20 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 23 C 0.07 2.14 6.79 38.92 0.26 2.40 16 24 C -0.13 -3.93 9.97 22.37 0.22 -3.71 16 25 C -0.11 -2.68 10.01 22.28 0.22 -2.46 16 26 C -0.14 -3.36 10.03 22.28 0.22 -3.14 16 27 C -0.09 -2.68 9.85 22.40 0.22 -2.46 16 28 C -0.08 -2.49 6.27 -20.08 -0.13 -2.62 16 29 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.12 0.17 7.65 -2.39 -0.02 0.16 16 32 H 0.20 6.04 5.82 -2.91 -0.02 6.02 16 33 H 0.43 4.23 7.04 -92.71 -0.65 3.57 16 34 H 0.22 2.53 7.38 -2.91 -0.02 2.50 16 35 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 36 H 0.12 2.88 8.11 -2.39 -0.02 2.87 16 37 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.26 14.10 8.31 -92.70 -0.77 13.32 16 40 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16 41 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 43 H 0.13 3.69 7.45 -2.91 -0.02 3.67 16 Total: -1.00 -74.46 373.57 5.08 -69.37 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.41 Total: 16.80 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 7.22 Total: -11.01 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -4.51 Total: -99.68 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.06 Total: -17.24 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.75 kcal Total: -74.46 5.08 -69.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652732917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.616 kcal (2) G-P(sol) polarization free energy of solvation -74.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds