Wall clock time and date at job start Tue Mar 31 2020 22:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35490 * 126.98204 * 2 1 4 4 N 1.30521 * 107.30779 * 180.22333 * 3 2 1 5 5 N 1.28598 * 109.67242 * 359.77293 * 4 3 2 6 6 C 1.30520 * 109.67343 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.34805 * 179.97438 * 6 5 4 8 8 N 1.46891 * 109.47596 * 90.02109 * 7 6 5 9 9 C 1.46901 * 111.00439 * 184.36835 * 8 7 6 10 10 H 1.08993 * 109.47395 * 184.21733 * 9 8 7 11 11 C 1.53004 * 109.47290 * 64.21694 * 9 8 7 12 12 N 1.46508 * 109.46985 * 55.00286 * 11 9 8 13 13 C 1.34769 * 119.99896 * 180.02562 * 12 11 9 14 14 O 1.21284 * 120.00268 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99742 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.46927 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99930 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00099 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.00385 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99581 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00416 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47274 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47333 * 119.99525 * 21 19 17 24 24 H 1.48500 * 109.47133 * 239.99940 * 21 19 17 25 25 C 1.52996 * 109.47081 * 304.22261 * 9 8 7 26 26 C 1.53001 * 117.49946 * 225.82477 * 25 9 8 27 27 C 1.53002 * 117.49601 * 294.48302 * 25 9 8 28 28 H 1.09000 * 109.46955 * 270.15726 * 1 2 3 29 29 H 1.08997 * 109.46850 * 30.15997 * 1 2 3 30 30 H 1.08999 * 109.47409 * 150.15858 * 1 2 3 31 31 H 1.07995 * 126.34833 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.46752 * 330.01699 * 7 6 5 33 33 H 1.09003 * 109.47072 * 210.01909 * 7 6 5 34 34 H 1.00903 * 111.00260 * 308.31621 * 8 7 6 35 35 H 1.08995 * 109.47160 * 175.00117 * 11 9 8 36 36 H 1.08999 * 109.47157 * 295.00898 * 11 9 8 37 37 H 0.97004 * 119.99686 * 0.02562 * 12 11 9 38 38 H 1.09004 * 109.46682 * 299.99445 * 15 13 12 39 39 H 1.08996 * 109.47639 * 59.99418 * 15 13 12 40 40 H 0.96998 * 119.99917 * 180.02562 * 20 19 17 41 41 H 1.08997 * 115.55637 * 80.14685 * 25 9 8 42 42 H 1.09005 * 117.49946 * 214.99984 * 26 25 9 43 43 H 1.09001 * 117.49840 * 0.02562 * 26 25 9 44 44 H 1.08999 * 117.50165 * 359.97106 * 27 25 9 45 45 H 1.09004 * 117.49916 * 144.99291 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 -0.0049 5 7 3.5091 -0.6431 -0.0031 6 6 2.2801 -1.0824 0.0025 7 6 1.8476 -2.5260 0.0056 8 7 1.7123 -2.9937 1.3915 9 6 1.3923 -4.4268 1.4348 10 1 1.2240 -4.7305 2.4679 11 6 2.5581 -5.2276 0.8513 12 7 3.7917 -4.8829 1.5624 13 6 4.9550 -5.4691 1.2168 14 8 4.9806 -6.2823 0.3173 15 6 6.2238 -5.1149 1.9487 16 16 7.6030 -6.0622 1.2583 17 6 8.9185 -5.4682 2.2690 18 1 8.7212 -4.7332 3.0353 19 6 10.2085 -5.9440 2.0797 20 7 10.4491 -6.8395 1.1453 21 14 11.6032 -5.3138 3.1506 22 1 11.0738 -4.3192 4.1181 23 1 12.2115 -6.4490 3.8900 24 1 12.6330 -4.6716 2.2949 25 6 0.1294 -4.6923 0.6130 26 6 -0.9426 -5.5894 1.2349 27 6 -1.1811 -4.0822 1.1145 28 1 -0.3633 0.0028 1.0277 29 1 -0.3633 0.8885 -0.5163 30 1 -0.3634 -0.8914 -0.5114 31 1 1.9703 2.1169 -0.0004 32 1 2.5940 -3.1300 -0.5105 33 1 0.8888 -2.6192 -0.5044 34 1 2.5458 -2.7933 1.9238 35 1 2.3593 -6.2933 0.9642 36 1 2.6696 -4.9888 -0.2064 37 1 3.7712 -4.2328 2.2821 38 1 6.4225 -4.0490 1.8365 39 1 6.1123 -5.3544 3.0062 40 1 11.3506 -7.1723 1.0132 41 1 0.2747 -4.7553 -0.4654 42 1 -1.5024 -6.2429 0.5656 43 1 -0.7483 -5.9902 2.2298 44 1 -1.1436 -3.4921 2.0302 45 1 -1.8977 -3.7439 0.3661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661106468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:12 Heat of formation + Delta-G solvation = 77.667081 kcal Electronic energy + Delta-G solvation = -26718.775473 eV Core-core repulsion = 22900.279207 eV Total energy + Delta-G solvation = -3818.496266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.33582 -39.81337 -38.47041 -35.96032 -35.30888 -33.91331 -32.36951 -31.45725 -29.79060 -28.22615 -27.86335 -26.00733 -25.41336 -23.41861 -22.67797 -22.60066 -21.47502 -20.33118 -19.91424 -17.88350 -17.66743 -16.80831 -16.52819 -16.43265 -16.08118 -15.69584 -15.58332 -15.19731 -14.74933 -14.56080 -14.22985 -13.94320 -13.90515 -13.77879 -13.69456 -13.06649 -13.01865 -12.58733 -12.48501 -12.37094 -11.89130 -11.73583 -11.63848 -11.39773 -11.01751 -10.96017 -10.75014 -10.67958 -10.65590 -10.53288 -10.46499 -9.75451 -9.55584 -9.39640 -9.02790 -8.96264 -8.89116 -8.17622 -6.43613 -6.16173 -3.85989 1.49506 2.17314 2.65560 2.99996 3.12139 3.26578 3.28897 3.34541 3.40028 3.71083 3.80675 4.07516 4.17049 4.24560 4.26108 4.29257 4.44705 4.53951 4.60004 4.68963 4.78751 4.86253 4.90699 5.02390 5.09790 5.19237 5.20767 5.28761 5.29323 5.46755 5.56171 5.58308 5.64858 5.76481 5.80428 5.85204 5.87367 5.96158 6.21494 6.34067 6.54481 6.57214 6.80539 7.63771 7.66570 8.41658 8.53091 8.61390 9.29555 10.91422 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.002688 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.642940 B =10413.549474 C =12371.315761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.469 5.469 3 C 0.145 3.855 4 N -0.294 5.294 5 N -0.282 5.282 6 C 0.177 3.823 7 C 0.141 3.859 8 N -0.672 5.672 9 C 0.110 3.890 10 H 0.097 0.903 11 C 0.088 3.912 12 N -0.740 5.740 13 C 0.536 3.464 14 O -0.516 6.516 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.533 4.533 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.152 4.152 26 C -0.174 4.174 27 C -0.162 4.162 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.217 0.783 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.349 0.651 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.394 0.606 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.267 0.733 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.478 12.560 0.129 32.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.160 5.160 3 C -0.142 4.142 4 N -0.133 5.133 5 N -0.123 5.123 6 C -0.091 4.091 7 C 0.010 3.990 8 N -0.305 5.305 9 C 0.000 4.000 10 H 0.115 0.885 11 C -0.038 4.038 12 N -0.396 5.396 13 C 0.322 3.678 14 O -0.389 6.389 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.681 4.681 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.171 4.171 26 C -0.211 4.211 27 C -0.199 4.199 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.234 0.766 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.170 0.830 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.229 0.771 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -29.457 11.303 -1.429 31.583 hybrid contribution 0.221 1.455 1.771 2.303 sum -29.236 12.758 0.342 31.900 Atomic orbital electron populations 1.22079 0.75317 1.04835 1.04434 1.46148 1.09206 1.06647 1.53972 1.26473 0.87329 0.94932 1.05489 1.74329 1.17989 1.03273 1.17715 1.74396 1.16924 1.03219 1.17753 1.24736 0.87239 0.92135 1.04991 1.20262 1.01728 0.85103 0.91935 1.60806 1.42775 1.15623 1.11254 1.21436 0.92364 0.86147 1.00075 0.88533 1.21928 0.84083 1.00680 0.97121 1.45973 1.07597 1.46702 1.39349 1.20293 0.84057 0.80151 0.83289 1.90703 1.85808 1.32603 1.29823 1.23531 0.97719 1.05972 1.03198 1.85360 0.96148 1.53914 1.47947 1.22910 0.94329 1.29185 1.21662 0.90863 1.24993 0.98168 0.94792 0.95691 1.70033 1.21500 1.28014 1.30854 0.86113 0.80942 0.78634 0.79796 1.19583 1.20624 1.20563 1.22128 0.89528 1.06177 0.99235 1.23016 1.02035 0.93547 1.02511 1.22839 0.97896 0.95797 1.03356 0.89632 0.89281 0.89123 0.76617 0.90642 0.88858 0.83049 0.90718 0.91345 0.77149 0.88982 0.89292 0.92295 0.87613 0.88611 0.88544 0.88266 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.22 11.04 59.85 0.66 0.88 16 2 N -0.47 -3.58 3.15 -122.69 -0.39 -3.96 16 3 C 0.15 1.29 12.74 -89.95 -1.15 0.15 16 4 N -0.29 -4.12 12.21 29.69 0.36 -3.76 16 5 N -0.28 -4.18 12.21 32.80 0.40 -3.78 16 6 C 0.18 1.87 7.50 -154.98 -1.16 0.71 16 7 C 0.14 1.17 5.38 -4.98 -0.03 1.14 16 8 N -0.67 -5.00 6.42 -108.00 -0.69 -5.69 16 9 C 0.11 0.78 2.90 -67.71 -0.20 0.59 16 10 H 0.10 0.66 7.95 -51.93 -0.41 0.25 16 11 C 0.09 0.94 4.80 -4.04 -0.02 0.92 16 12 N -0.74 -9.69 5.31 -60.29 -0.32 -10.01 16 13 C 0.54 10.18 7.85 -10.99 -0.09 10.09 16 14 O -0.52 -11.86 15.86 5.55 0.09 -11.78 16 15 C -0.15 -3.22 6.16 36.01 0.22 -3.00 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.62 9.50 30.94 0.29 -15.32 16 18 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.78 13.22 55.49 0.73 -26.05 16 21 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C -0.15 -0.89 3.78 -90.62 -0.34 -1.23 16 26 C -0.17 -0.93 10.18 -26.69 -0.27 -1.20 16 27 C -0.16 -0.76 10.22 -26.69 -0.27 -1.03 16 28 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.09 0.18 7.19 -51.93 -0.37 -0.19 16 31 H 0.22 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.08 0.79 6.32 -51.93 -0.33 0.47 16 33 H 0.09 0.57 6.06 -51.93 -0.31 0.25 16 34 H 0.35 3.06 7.07 -39.29 -0.28 2.78 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.81 6.66 -51.93 -0.35 0.47 16 37 H 0.39 4.20 7.12 -40.82 -0.29 3.91 16 38 H 0.09 1.85 8.14 -51.91 -0.42 1.43 16 39 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.11 0.63 7.89 -51.93 -0.41 0.22 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.52 8.08 -51.93 -0.42 0.10 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -39.19 391.02 -10.12 -49.31 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.52 Total: 1.98 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.44 Total: -5.27 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.10 Total: -53.26 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.19 -10.12 -49.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661106468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.975 kcal (2) G-P(sol) polarization free energy of solvation -39.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds