Wall clock time and date at job start Tue Mar 31 2020 22:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35490 * 126.98204 * 2 1 4 4 N 1.30521 * 107.30779 * 180.22333 * 3 2 1 5 5 N 1.28598 * 109.67242 * 359.77293 * 4 3 2 6 6 C 1.30520 * 109.67343 * 0.02562 * 5 4 3 7 7 C 1.50697 * 126.34805 * 179.97438 * 6 5 4 8 8 N 1.46891 * 109.47596 * 90.02109 * 7 6 5 9 9 C 1.46901 * 111.00439 * 184.36835 * 8 7 6 10 10 H 1.08993 * 109.47395 * 184.21733 * 9 8 7 11 11 C 1.53004 * 109.47290 * 64.21694 * 9 8 7 12 12 N 1.46508 * 109.46985 * 55.00286 * 11 9 8 13 13 C 1.34769 * 119.99896 * 180.02562 * 12 11 9 14 14 O 1.21284 * 120.00268 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99742 * 180.02562 * 13 12 11 16 16 S 1.81001 * 109.46927 * 179.97438 * 15 13 12 17 17 C 1.76205 * 99.99930 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00099 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.00385 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99581 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00416 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47274 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47333 * 119.99525 * 21 19 17 24 24 H 1.48500 * 109.47133 * 239.99940 * 21 19 17 25 25 C 1.52996 * 109.47081 * 304.22261 * 9 8 7 26 26 C 1.53001 * 117.49946 * 225.82477 * 25 9 8 27 27 C 1.53002 * 117.49601 * 294.48302 * 25 9 8 28 28 H 1.09000 * 109.46955 * 270.15726 * 1 2 3 29 29 H 1.08997 * 109.46850 * 30.15997 * 1 2 3 30 30 H 1.08999 * 109.47409 * 150.15858 * 1 2 3 31 31 H 1.07995 * 126.34833 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.46752 * 330.01699 * 7 6 5 33 33 H 1.09003 * 109.47072 * 210.01909 * 7 6 5 34 34 H 1.00903 * 111.00260 * 308.31621 * 8 7 6 35 35 H 1.08995 * 109.47160 * 175.00117 * 11 9 8 36 36 H 1.08999 * 109.47157 * 295.00898 * 11 9 8 37 37 H 0.97004 * 119.99686 * 0.02562 * 12 11 9 38 38 H 1.09004 * 109.46682 * 299.99445 * 15 13 12 39 39 H 1.08996 * 109.47639 * 59.99418 * 15 13 12 40 40 H 0.96998 * 119.99917 * 180.02562 * 20 19 17 41 41 H 1.08997 * 115.55637 * 80.14685 * 25 9 8 42 42 H 1.09005 * 117.49946 * 214.99984 * 26 25 9 43 43 H 1.09001 * 117.49840 * 0.02562 * 26 25 9 44 44 H 1.08999 * 117.50165 * 359.97106 * 27 25 9 45 45 H 1.09004 * 117.49916 * 144.99291 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 -0.0049 5 7 3.5091 -0.6431 -0.0031 6 6 2.2801 -1.0824 0.0025 7 6 1.8476 -2.5260 0.0056 8 7 1.7123 -2.9937 1.3915 9 6 1.3923 -4.4268 1.4348 10 1 1.2240 -4.7305 2.4679 11 6 2.5581 -5.2276 0.8513 12 7 3.7917 -4.8829 1.5624 13 6 4.9550 -5.4691 1.2168 14 8 4.9806 -6.2823 0.3173 15 6 6.2238 -5.1149 1.9487 16 16 7.6030 -6.0622 1.2583 17 6 8.9185 -5.4682 2.2690 18 1 8.7212 -4.7332 3.0353 19 6 10.2085 -5.9440 2.0797 20 7 10.4491 -6.8395 1.1453 21 14 11.6032 -5.3138 3.1506 22 1 11.0738 -4.3192 4.1181 23 1 12.2115 -6.4490 3.8900 24 1 12.6330 -4.6716 2.2949 25 6 0.1294 -4.6923 0.6130 26 6 -0.9426 -5.5894 1.2349 27 6 -1.1811 -4.0822 1.1145 28 1 -0.3633 0.0028 1.0277 29 1 -0.3633 0.8885 -0.5163 30 1 -0.3634 -0.8914 -0.5114 31 1 1.9703 2.1169 -0.0004 32 1 2.5940 -3.1300 -0.5105 33 1 0.8888 -2.6192 -0.5044 34 1 2.5458 -2.7933 1.9238 35 1 2.3593 -6.2933 0.9642 36 1 2.6696 -4.9888 -0.2064 37 1 3.7712 -4.2328 2.2821 38 1 6.4225 -4.0490 1.8365 39 1 6.1123 -5.3544 3.0062 40 1 11.3506 -7.1723 1.0132 41 1 0.2747 -4.7553 -0.4654 42 1 -1.5024 -6.2429 0.5656 43 1 -0.7483 -5.9902 2.2298 44 1 -1.1436 -3.4921 2.0302 45 1 -1.8977 -3.7439 0.3661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661106468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:11 Heat of formation + Delta-G solvation = 49.074824 kcal Electronic energy + Delta-G solvation = -26720.015327 eV Core-core repulsion = 22900.279207 eV Total energy + Delta-G solvation = -3819.736119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.07029 -40.94069 -39.47507 -36.61063 -35.97006 -35.01488 -34.59675 -32.37944 -31.12189 -29.16789 -28.36478 -27.68202 -26.74021 -24.20867 -23.30189 -23.05755 -22.23029 -21.64105 -20.55718 -19.85539 -18.27447 -17.95637 -17.49286 -17.35760 -17.06868 -16.89623 -16.60563 -16.29793 -16.16632 -15.89342 -15.34374 -15.03043 -14.70307 -14.53405 -14.45140 -14.21389 -14.16630 -13.81483 -13.37726 -13.18006 -13.12706 -12.96092 -12.89240 -12.61150 -12.48806 -12.23918 -12.00358 -11.73173 -11.29873 -11.21536 -11.16971 -11.10703 -11.04017 -10.93390 -10.36821 -10.30548 -10.19897 -9.63538 -8.68078 -8.36268 -6.14150 0.82932 1.24876 1.40195 1.44673 1.56506 1.57245 1.64846 1.85849 2.18646 2.26187 2.83747 2.97799 3.17167 3.29648 3.46173 3.58085 3.74624 3.82026 3.92305 3.96941 4.03381 4.14130 4.22877 4.27328 4.27736 4.38428 4.47637 4.49485 4.52105 4.61147 4.71131 4.77952 4.88670 4.95105 5.00399 5.16954 5.18701 5.29651 5.36057 5.40726 5.44019 5.71015 5.99759 6.07268 6.18771 6.37454 7.05093 7.16890 7.75427 8.73418 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.011517 B = 0.002688 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.642940 B =10413.549474 C =12371.315761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.461 5.461 3 C 0.162 3.838 4 N -0.356 5.356 5 N -0.344 5.344 6 C 0.176 3.824 7 C 0.148 3.852 8 N -0.658 5.658 9 C 0.125 3.875 10 H 0.109 0.891 11 C 0.087 3.913 12 N -0.713 5.713 13 C 0.537 3.463 14 O -0.562 6.562 15 C -0.131 4.131 16 S -0.148 6.148 17 C -0.546 4.546 18 H 0.080 0.920 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.274 1.274 25 C -0.162 4.162 26 C -0.178 4.178 27 C -0.144 4.144 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.260 0.740 32 H 0.049 0.951 33 H 0.121 0.879 34 H 0.342 0.658 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.409 0.591 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.272 0.728 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.334 14.551 1.698 36.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.151 5.151 3 C -0.127 4.127 4 N -0.195 5.195 5 N -0.185 5.185 6 C -0.094 4.094 7 C 0.017 3.983 8 N -0.290 5.290 9 C 0.015 3.985 10 H 0.126 0.874 11 C -0.038 4.038 12 N -0.368 5.368 13 C 0.323 3.677 14 O -0.440 6.440 15 C -0.282 4.282 16 S 0.080 5.920 17 C -0.694 4.694 18 H 0.098 0.902 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.821 3.179 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.181 4.181 26 C -0.215 4.215 27 C -0.181 4.181 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.120 0.880 31 H 0.276 0.724 32 H 0.067 0.933 33 H 0.139 0.861 34 H 0.161 0.839 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.247 0.753 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.119 0.881 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -32.389 13.327 0.166 35.025 hybrid contribution 0.894 0.897 1.265 1.790 sum -31.495 14.224 1.431 34.588 Atomic orbital electron populations 1.22497 0.72142 1.06864 1.05836 1.46380 1.10868 1.05298 1.52529 1.27241 0.86247 0.96712 1.02517 1.74185 1.21139 1.03380 1.20750 1.74254 1.19730 1.04136 1.20381 1.24933 0.86893 0.93418 1.04124 1.20265 1.02127 0.83683 0.92205 1.60867 1.42036 1.15499 1.10553 1.21386 0.91322 0.85107 1.00664 0.87352 1.22142 0.83955 1.01106 0.96622 1.45692 1.06752 1.45351 1.39008 1.19976 0.84944 0.80114 0.82663 1.90688 1.86512 1.34970 1.31834 1.23368 0.95851 1.04987 1.03991 1.85498 0.99988 1.56524 1.50035 1.23224 0.94910 1.29450 1.21801 0.90156 1.26139 1.01195 0.94758 0.97099 1.70189 1.22411 1.29416 1.32733 0.84895 0.76805 0.78367 0.77815 1.18199 1.19575 1.19935 1.22056 0.89253 1.07770 0.99000 1.23084 1.01657 0.94310 1.02496 1.22889 0.96568 0.95104 1.03526 0.88442 0.86539 0.87968 0.72385 0.93320 0.86123 0.83909 0.91360 0.92462 0.75341 0.88000 0.87143 0.91945 0.87659 0.88249 0.88599 0.88082 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.12 11.04 127.77 1.41 1.53 16 2 N -0.46 -6.00 3.15 -542.08 -1.71 -7.70 16 3 C 0.16 2.60 12.74 180.11 2.30 4.90 16 4 N -0.36 -10.10 12.21 -59.99 -0.73 -10.83 16 5 N -0.34 -10.49 12.21 -50.15 -0.61 -11.10 16 6 C 0.18 3.60 7.50 137.98 1.03 4.63 16 7 C 0.15 2.30 5.38 85.56 0.46 2.76 16 8 N -0.66 -8.62 6.42 -495.60 -3.18 -11.80 16 9 C 0.13 1.55 2.90 44.92 0.13 1.68 16 10 H 0.11 1.18 7.95 -2.39 -0.02 1.17 16 11 C 0.09 1.83 4.80 86.38 0.41 2.25 16 12 N -0.71 -18.41 5.31 -463.05 -2.46 -20.87 16 13 C 0.54 20.78 7.85 87.66 0.69 21.47 16 14 O -0.56 -26.90 15.86 -3.04 -0.05 -26.94 16 15 C -0.13 -5.55 6.16 71.24 0.44 -5.11 16 16 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 17 C -0.55 -32.54 9.50 67.95 0.65 -31.89 16 18 H 0.08 4.50 7.80 -2.91 -0.02 4.47 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -57.57 13.22 21.65 0.29 -57.28 16 21 Si 1.00 45.38 29.55 68.60 2.03 47.40 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 C -0.16 -1.50 3.78 -10.79 -0.04 -1.55 16 26 C -0.18 -1.46 10.18 30.62 0.31 -1.15 16 27 C -0.14 -0.84 10.22 30.62 0.31 -0.53 16 28 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.10 -0.02 7.19 -2.39 -0.02 -0.03 16 31 H 0.26 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.05 1.04 6.32 -2.39 -0.02 1.03 16 33 H 0.12 1.17 6.06 -2.39 -0.01 1.16 16 34 H 0.34 5.54 7.07 -89.69 -0.63 4.90 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 1.39 6.66 -2.39 -0.02 1.37 16 37 H 0.41 8.23 7.12 -92.71 -0.66 7.57 16 38 H 0.10 4.11 8.14 -2.39 -0.02 4.10 16 39 H 0.11 4.19 8.14 -2.40 -0.02 4.17 16 40 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 41 H 0.11 1.04 7.89 -2.39 -0.02 1.02 16 42 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.10 0.81 8.08 -2.39 -0.02 0.79 16 44 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 Total: -1.00 -91.22 391.02 0.71 -90.51 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -0.27 Total: 18.13 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 8.57 Total: 0.20 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -8.41 Total: -119.58 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -91.22 0.71 -90.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661106468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.584 kcal (2) G-P(sol) polarization free energy of solvation -91.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds