Wall clock time and date at job start Tue Mar 31 2020 22:34:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.35306 * 125.87041 * 2 1
4 4 C 1.35350 * 106.17659 * 180.26171 * 3 2 1
5 5 C 1.50701 * 126.74950 * 180.02562 * 4 3 2
6 6 N 1.46901 * 109.46948 * 94.95381 * 5 4 3
7 7 C 1.46899 * 111.00282 * 176.33595 * 6 5 4
8 8 H 1.08999 * 109.47059 * 33.84522 * 7 6 5
9 9 C 1.52995 * 109.47609 * 153.84784 * 7 6 5
10 10 N 1.46492 * 109.47361 * 305.00230 * 9 7 6
11 11 C 1.34779 * 120.00724 * 179.97438 * 10 9 7
12 12 O 1.21283 * 119.99581 * 0.02562 * 11 10 9
13 13 C 1.50699 * 120.00412 * 179.97438 * 11 10 9
14 14 S 1.80994 * 109.46917 * 180.02562 * 13 11 10
15 15 C 1.76198 * 99.99988 * 180.02562 * 14 13 11
16 16 H 1.08003 * 120.00256 * 0.02562 * 15 14 13
17 17 C 1.38805 * 120.00432 * 180.02562 * 15 14 13
18 18 N 1.31629 * 120.00020 * 180.02562 * 17 15 14
19 19 Si 1.86793 * 119.99629 * 0.02562 * 17 15 14
20 20 H 1.48495 * 109.47502 * 89.99887 * 19 17 15
21 21 H 1.48504 * 109.47152 * 210.00206 * 19 17 15
22 22 H 1.48502 * 109.47344 * 329.99717 * 19 17 15
23 23 C 1.53008 * 109.47004 * 273.85060 * 7 6 5
24 24 C 1.53001 * 117.49815 * 243.48579 * 23 7 6
25 25 C 1.52999 * 117.50046 * 174.82511 * 23 7 6
26 26 N 1.33770 * 106.49587 * 0.02562 * 4 3 2
27 27 N 1.28630 * 108.88670 * 359.97438 * 26 4 3
28 28 H 1.08992 * 109.47211 * 269.72069 * 1 2 3
29 29 H 1.08999 * 109.46469 * 29.71966 * 1 2 3
30 30 H 1.08997 * 109.46923 * 149.71331 * 1 2 3
31 31 H 1.08001 * 126.91475 * 0.22370 * 3 2 1
32 32 H 1.08996 * 109.47180 * 214.94948 * 5 4 3
33 33 H 1.08996 * 109.47574 * 334.95510 * 5 4 3
34 34 H 1.00899 * 111.00334 * 52.37851 * 6 5 4
35 35 H 1.09008 * 109.47033 * 64.99713 * 9 7 6
36 36 H 1.08993 * 109.47656 * 184.99858 * 9 7 6
37 37 H 0.97006 * 119.99820 * 359.97438 * 10 9 7
38 38 H 1.08997 * 109.46907 * 300.00786 * 13 11 10
39 39 H 1.09003 * 109.46927 * 60.00147 * 13 11 10
40 40 H 0.97005 * 119.99653 * 180.02562 * 18 17 15
41 41 H 1.09007 * 115.55006 * 29.15376 * 23 7 6
42 42 H 1.08996 * 117.49678 * 359.97438 * 24 23 7
43 43 H 1.08994 * 117.50060 * 145.01836 * 24 23 7
44 44 H 1.08996 * 117.50128 * 214.97770 * 25 23 7
45 45 H 1.09005 * 117.49552 * 359.97417 * 25 23 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2579 1.0964 0.0000
4 6 3.5322 0.6403 -0.0059
5 6 4.7880 1.4733 -0.0078
6 7 5.2671 1.6401 1.3709
7 6 6.5389 2.3746 1.4011
8 1 6.5528 3.1103 0.5971
9 6 6.6845 3.0872 2.7471
10 7 5.5138 3.9367 2.9791
11 6 5.4224 4.6645 4.1098
12 8 6.3098 4.6164 4.9351
13 6 4.2183 5.5388 4.3481
14 16 4.3905 6.3817 5.9405
15 6 2.8904 7.3057 5.9613
16 1 2.1996 7.2327 5.1343
17 6 2.5962 8.1274 7.0406
18 7 1.4753 8.8172 7.0564
19 14 3.7912 8.2542 8.4707
20 1 4.7552 9.3542 8.2143
21 1 3.0397 8.5358 9.7203
22 1 4.5286 6.9733 8.6148
23 6 7.6987 1.3940 1.2151
24 6 8.6894 1.2442 2.3714
25 6 9.1070 1.9799 1.0956
26 7 3.4576 -0.6953 -0.0098
27 7 2.2192 -1.0431 -0.0059
28 1 -0.3633 -0.0050 1.0276
29 1 -0.3632 0.8925 -0.5095
30 1 -0.3633 -0.8874 -0.5183
31 1 1.9382 2.1281 0.0034
32 1 5.5543 0.9741 -0.6008
33 1 4.5747 2.4514 -0.4390
34 1 5.3537 0.7478 1.8340
35 1 6.7598 2.3471 3.5439
36 1 7.5838 3.7029 2.7369
37 1 4.8041 3.9754 2.3188
38 1 4.1436 6.2791 3.5516
39 1 3.3187 4.9234 4.3577
40 1 1.2699 9.3917 7.8105
41 1 7.4723 0.5041 0.6278
42 1 8.5152 1.8444 3.2643
43 1 9.1151 0.2558 2.5445
44 1 9.8072 1.4754 0.4300
45 1 9.2072 3.0641 1.1491
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001661107343.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:34:10
Heat of formation + Delta-G solvation = 92.800709 kcal
Electronic energy + Delta-G solvation = -26163.138652 eV
Core-core repulsion = 22345.298629 eV
Total energy + Delta-G solvation = -3817.840023 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.147 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-43.55404 -39.70263 -38.46630 -35.96446 -34.81780 -34.02234 -32.42025 -31.72328
-29.99510 -28.53028 -27.85299 -25.65232 -25.34571 -23.85775 -22.61359 -22.40792
-21.46445 -20.42106 -20.03055 -17.85399 -17.58370 -17.01778 -16.86158 -16.28802
-15.92840 -15.37263 -15.20718 -15.11753 -14.85969 -14.68093 -14.63955 -13.86315
-13.67566 -13.65803 -13.42402 -13.12029 -13.04067 -12.77426 -12.68803 -12.18022
-11.90736 -11.82552 -11.65462 -11.51797 -11.24011 -11.16352 -10.98967 -10.76100
-10.57149 -10.40995 -10.31710 -9.83472 -9.58863 -9.42431 -8.98743 -8.82020
-8.72788 -8.45763 -6.88062 -6.27464 -3.98112 1.27034 2.01360 2.15133
2.83592 3.10388 3.34041 3.38781 3.41416 3.52895 3.71601 3.84680
4.07619 4.20039 4.34990 4.36761 4.50706 4.53459 4.58002 4.70384
4.71446 4.77445 4.81440 4.82949 5.00727 5.09371 5.11913 5.16986
5.26978 5.39437 5.41421 5.55327 5.62484 5.64593 5.77259 5.81815
5.84023 5.85346 5.90080 6.07849 6.20263 6.56651 6.70190 7.01057
7.81851 7.95865 8.18203 8.42980 8.63878 9.19239 10.81833
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.009137 B = 0.002708 C = 0.002148
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3063.730296 B =10336.836595 C =13034.237707
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.080 3.920
2 N -0.295 5.295
3 C -0.026 4.026
4 C -0.024 4.024
5 C 0.146 3.854
6 N -0.675 5.675
7 C 0.108 3.892
8 H 0.090 0.910
9 C 0.133 3.867
10 N -0.722 5.722
11 C 0.528 3.472
12 O -0.526 6.526
13 C -0.122 4.122
14 S -0.143 6.143
15 C -0.520 4.520
16 H 0.087 0.913
17 C 0.095 3.905
18 N -0.882 5.882
19 Si 0.857 3.143
20 H -0.267 1.267
21 H -0.275 1.275
22 H -0.235 1.235
23 C -0.186 4.186
24 C -0.181 4.181
25 C -0.174 4.174
26 N -0.265 5.265
27 N -0.089 5.089
28 H 0.094 0.906
29 H 0.100 0.900
30 H 0.100 0.900
31 H 0.193 0.807
32 H 0.051 0.949
33 H 0.091 0.909
34 H 0.352 0.648
35 H 0.069 0.931
36 H 0.068 0.932
37 H 0.403 0.597
38 H 0.095 0.905
39 H 0.096 0.904
40 H 0.270 0.730
41 H 0.107 0.893
42 H 0.107 0.893
43 H 0.093 0.907
44 H 0.093 0.907
45 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.934 -17.314 -19.993 26.739
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 N -0.088 5.088
3 C -0.178 4.178
4 C -0.162 4.162
5 C 0.016 3.984
6 N -0.306 5.306
7 C -0.003 4.003
8 H 0.108 0.892
9 C 0.008 3.992
10 N -0.376 5.376
11 C 0.314 3.686
12 O -0.402 6.402
13 C -0.272 4.272
14 S 0.083 5.917
15 C -0.667 4.667
16 H 0.105 0.895
17 C -0.113 4.113
18 N -0.519 5.519
19 Si 0.681 3.319
20 H -0.192 1.192
21 H -0.200 1.200
22 H -0.159 1.159
23 C -0.206 4.206
24 C -0.217 4.217
25 C -0.212 4.212
26 N -0.133 5.133
27 N -0.068 5.068
28 H 0.112 0.888
29 H 0.119 0.881
30 H 0.119 0.881
31 H 0.210 0.790
32 H 0.070 0.930
33 H 0.109 0.891
34 H 0.172 0.828
35 H 0.087 0.913
36 H 0.086 0.914
37 H 0.238 0.762
38 H 0.113 0.887
39 H 0.114 0.886
40 H 0.080 0.920
41 H 0.125 0.875
42 H 0.125 0.875
43 H 0.112 0.888
44 H 0.111 0.889
45 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 4.880 -18.266 -18.414 26.392
hybrid contribution -0.827 0.750 -0.940 1.459
sum 4.053 -17.516 -19.354 26.416
Atomic orbital electron populations
1.22309 0.72512 1.05916 1.05378 1.47257 1.09554 1.04970 1.46998
1.23462 0.90789 0.94852 1.08726 1.21810 0.95253 0.91228 1.07904
1.20124 0.90394 0.97446 0.90445 1.60624 1.28367 1.26257 1.15364
1.21351 0.86196 0.94712 0.97996 0.89207 1.21377 0.88754 0.93190
0.95860 1.45735 1.23452 1.46280 1.22111 1.20237 0.87748 0.79647
0.80961 1.90689 1.40480 1.64764 1.44255 1.23251 0.98670 1.01061
1.04245 1.84787 1.30960 1.56063 1.19884 1.22329 1.04582 1.29819
1.10010 0.89460 1.24714 0.95053 0.93831 0.97748 1.69941 1.23158
1.27154 1.31638 0.86732 0.81700 0.81438 0.81981 1.19227 1.20011
1.15874 1.23075 0.91562 1.01806 1.04179 1.23191 1.02728 1.02457
0.93363 1.22965 0.96713 1.00546 1.00929 1.75031 1.09723 1.12088
1.16432 1.78310 0.96333 1.12154 1.20019 0.88769 0.88102 0.88085
0.78988 0.93038 0.89055 0.82841 0.91287 0.91383 0.76195 0.88713
0.88612 0.91991 0.87458 0.87497 0.88835 0.88864 0.88421
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.26 11.39 59.85 0.68 0.94 16
2 N -0.29 -2.35 3.74 -68.06 -0.25 -2.61 16
3 C -0.03 -0.20 11.55 -17.05 -0.20 -0.39 16
4 C -0.02 -0.21 6.72 -82.78 -0.56 -0.77 16
5 C 0.15 1.03 6.04 -4.97 -0.03 1.00 16
6 N -0.67 -5.35 5.71 -107.99 -0.62 -5.97 16
7 C 0.11 0.83 2.51 -67.71 -0.17 0.66 16
8 H 0.09 0.63 7.83 -51.93 -0.41 0.22 16
9 C 0.13 1.45 3.95 -4.05 -0.02 1.44 16
10 N -0.72 -9.21 5.39 -60.30 -0.32 -9.54 16
11 C 0.53 9.46 7.85 -10.98 -0.09 9.37 16
12 O -0.53 -11.48 15.86 5.55 0.09 -11.39 16
13 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16
14 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16
15 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16
16 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16
17 C 0.09 2.78 5.50 -17.43 -0.10 2.69 16
18 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16
19 Si 0.86 21.88 27.74 -169.99 -4.71 17.16 16
20 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16
21 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16
22 H -0.23 -6.00 6.74 56.52 0.38 -5.62 16
23 C -0.19 -1.36 5.55 -90.62 -0.50 -1.86 16
24 C -0.18 -1.44 9.50 -26.69 -0.25 -1.70 16
25 C -0.17 -1.24 10.01 -26.69 -0.27 -1.51 16
26 N -0.27 -3.15 12.41 33.29 0.41 -2.74 16
27 N -0.09 -1.01 13.17 60.35 0.79 -0.21 16
28 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16
29 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16
30 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16
31 H 0.19 0.81 8.06 -52.49 -0.42 0.39 16
32 H 0.05 0.36 7.76 -51.93 -0.40 -0.04 16
33 H 0.09 0.49 8.12 -51.93 -0.42 0.06 16
34 H 0.35 3.22 8.41 -39.29 -0.33 2.89 16
35 H 0.07 0.86 6.89 -51.92 -0.36 0.50 16
36 H 0.07 0.79 7.60 -51.93 -0.39 0.39 16
37 H 0.40 4.23 8.14 -40.82 -0.33 3.90 16
38 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16
39 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16
40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16
41 H 0.11 0.78 7.88 -51.93 -0.41 0.37 16
42 H 0.11 0.99 5.80 -51.93 -0.30 0.69 16
43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16
45 H 0.10 0.71 8.00 -51.93 -0.42 0.29 16
LS Contribution 392.04 15.07 5.91 5.91
Total: -1.00 -37.06 392.04 -7.62 -44.67
By element:
Atomic # 1 Polarization: 9.85 SS G_CDS: -6.73 Total: 3.12 kcal
Atomic # 6 Polarization: -5.98 SS G_CDS: -0.96 Total: -6.94 kcal
Atomic # 7 Polarization: -47.68 SS G_CDS: 0.79 Total: -46.89 kcal
Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal
Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -37.06 -7.62 -44.67 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001661107343.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 137.473 kcal
(2) G-P(sol) polarization free energy of solvation -37.055 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.418 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.672 kcal
(6) G-S(sol) free energy of system = (1) + (5) 92.801 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds