Wall clock time and date at job start Tue Mar 31 2020 23:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99721 * 2 1 4 4 H 1.48505 * 109.46965 * 240.00530 * 3 2 1 5 5 H 1.48501 * 109.47386 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47059 * 120.00507 * 3 2 1 7 7 C 1.38806 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00654 * 169.77019 * 7 2 1 9 9 N 1.36942 * 119.99648 * 350.04820 * 7 2 1 10 10 C 1.46964 * 120.59480 * 147.44182 * 9 7 2 11 11 C 1.53811 * 108.40087 * 124.75534 * 10 9 7 12 12 N 1.46969 * 108.57926 * 49.63663 * 11 10 9 13 13 C 1.34769 * 120.59310 * 124.62322 * 12 11 10 14 14 O 1.21594 * 120.00321 * 5.08663 * 13 12 11 15 15 N 1.34777 * 119.99935 * 185.08687 * 13 12 11 16 16 C 1.46508 * 119.99907 * 174.96923 * 15 13 12 17 17 H 1.08998 * 109.47006 * 35.00120 * 16 15 13 18 18 C 1.50698 * 109.46816 * 154.99581 * 16 15 13 19 19 C 1.38238 * 119.99944 * 39.73081 * 18 16 15 20 20 C 1.38242 * 119.99620 * 179.80677 * 19 18 16 21 21 C 1.38230 * 120.00239 * 0.39744 * 20 19 18 22 22 C 1.38238 * 120.00021 * 359.85105 * 21 20 19 23 23 C 1.38232 * 120.00268 * 219.99640 * 18 16 15 24 24 C 1.52994 * 109.47033 * 275.00032 * 16 15 13 25 25 F 1.39901 * 109.47055 * 180.02562 * 24 16 15 26 26 F 1.39905 * 109.46953 * 299.99955 * 24 16 15 27 27 C 1.46963 * 118.81047 * 304.65367 * 12 11 10 28 28 C 1.46969 * 120.59338 * 327.72147 * 9 7 2 29 29 H 0.97000 * 119.99990 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.61354 * 244.54006 * 10 9 7 31 31 H 1.09004 * 109.60634 * 5.05328 * 10 9 7 32 32 H 1.09006 * 109.74004 * 289.85382 * 11 10 9 33 33 H 1.08998 * 109.67904 * 169.39151 * 11 10 9 34 34 H 0.96996 * 120.00396 * 354.96520 * 15 13 12 35 35 H 1.07996 * 120.00249 * 359.97438 * 19 18 16 36 36 H 1.07999 * 119.99300 * 180.23144 * 20 19 18 37 37 H 1.07997 * 120.00063 * 179.84070 * 21 20 19 38 38 H 1.08001 * 120.00134 * 179.97438 * 22 21 20 39 39 H 1.08010 * 119.99759 * 359.97438 * 23 18 16 40 40 H 1.08997 * 109.47390 * 60.00102 * 24 16 15 41 41 H 1.09011 * 109.60953 * 295.47554 * 27 12 11 42 42 H 1.08998 * 109.60869 * 174.96950 * 27 12 11 43 43 H 1.09000 * 109.60701 * 354.94553 * 28 9 7 44 44 H 1.08994 * 109.60733 * 115.28889 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0774 -1.2095 -0.1666 9 7 1.3410 -2.3792 0.2039 10 6 1.7900 -3.6177 -0.4474 11 6 2.0216 -4.6813 0.6393 12 7 0.8379 -4.7274 1.5092 13 6 0.1787 -5.8857 1.7097 14 8 0.6140 -6.9214 1.2446 15 7 -0.9631 -5.8961 2.4257 16 6 -1.7378 -7.1332 2.5512 17 1 -1.0586 -7.9847 2.5917 18 6 -2.5593 -7.0855 3.8137 19 6 -3.1735 -5.9070 4.1945 20 6 -3.9303 -5.8644 5.3506 21 6 -4.0662 -6.9979 6.1300 22 6 -3.4478 -8.1750 5.7518 23 6 -2.6942 -8.2186 4.5938 24 6 -2.6661 -7.2783 1.3438 25 9 -3.4063 -8.4594 1.4639 26 9 -3.5379 -6.1854 1.2918 27 6 0.3855 -3.4877 2.1560 28 6 0.1572 -2.4252 1.0737 29 1 -0.4850 0.8400 0.0004 30 1 1.0258 -3.9628 -1.1437 31 1 2.7205 -3.4323 -0.9840 32 1 2.8995 -4.4192 1.2299 33 1 2.1715 -5.6553 0.1736 34 1 -1.2719 -5.0845 2.8579 35 1 -3.0643 -5.0205 3.5876 36 1 -4.4132 -4.9447 5.6461 37 1 -4.6554 -6.9638 7.0345 38 1 -3.5536 -9.0605 6.3610 39 1 -2.2111 -9.1384 4.2983 40 1 -2.0719 -7.3128 0.4306 41 1 1.1470 -3.1406 2.8546 42 1 -0.5468 -3.6726 2.6895 43 1 0.0092 -1.4521 1.5418 44 1 -0.7211 -2.6843 0.4826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662008275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:28 Heat of formation + Delta-G solvation = -63.277018 kcal Electronic energy + Delta-G solvation = -30317.569907 eV Core-core repulsion = 25906.828709 eV Total energy + Delta-G solvation = -4410.741199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.97208 -46.95329 -40.35343 -39.31141 -37.07158 -35.35524 -33.95430 -31.98917 -31.18139 -30.85936 -30.13905 -28.48378 -26.75945 -24.18737 -23.59532 -22.95294 -22.80880 -21.37737 -20.56882 -19.35890 -18.46185 -17.52665 -17.34565 -17.00632 -16.72347 -16.27587 -15.94078 -15.25091 -15.12064 -14.89011 -14.70973 -14.08485 -13.91943 -13.75923 -13.62663 -13.57115 -13.42510 -13.33295 -13.31276 -13.12101 -12.94028 -12.67100 -12.26662 -11.77819 -11.68175 -11.33519 -11.26819 -11.13011 -10.87843 -10.78413 -10.55541 -10.31905 -10.16636 -9.94748 -9.77718 -9.30540 -9.14432 -9.03118 -8.62777 -8.26535 -6.69321 -5.88952 -3.39975 1.00897 1.17408 2.67451 3.24231 3.32212 3.37911 3.38537 3.51984 3.81201 4.06071 4.08170 4.29251 4.40343 4.58666 4.75901 4.78973 4.86580 5.00068 5.19643 5.21816 5.25655 5.30170 5.40603 5.67390 5.70256 5.78159 5.82402 5.82986 6.05460 6.09110 6.18606 6.20658 6.27104 6.28681 6.38711 6.41507 6.69836 6.72658 6.85972 7.05375 7.25357 7.45165 7.68374 8.10910 8.35243 8.72009 9.09377 9.69567 10.28397 11.18178 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016095 B = 0.003048 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.201141 B = 9183.890308 C = 9863.558309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.006 3.994 3 Si 0.907 3.093 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.131 3.869 11 C 0.113 3.887 12 N -0.609 5.609 13 C 0.706 3.294 14 O -0.603 6.603 15 N -0.739 5.739 16 C 0.165 3.835 17 H 0.125 0.875 18 C -0.104 4.104 19 C -0.098 4.098 20 C -0.118 4.118 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.094 4.094 24 C 0.252 3.748 25 F -0.201 7.201 26 F -0.198 7.198 27 C 0.085 3.915 28 C 0.159 3.841 29 H 0.256 0.744 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.404 0.596 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.117 0.883 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.099 -14.122 10.619 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.737 3.263 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.003 3.997 11 C -0.012 4.012 12 N -0.344 5.344 13 C 0.408 3.592 14 O -0.483 6.483 15 N -0.399 5.399 16 C 0.057 3.943 17 H 0.142 0.858 18 C -0.104 4.104 19 C -0.116 4.116 20 C -0.136 4.136 21 C -0.131 4.131 22 C -0.139 4.139 23 C -0.112 4.112 24 C 0.197 3.803 25 F -0.182 7.182 26 F -0.180 7.180 27 C -0.040 4.040 28 C 0.032 3.968 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.243 0.757 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.134 0.866 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.119 0.881 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.892 -14.657 10.236 19.160 hybrid contribution -0.003 1.377 0.188 1.390 sum -6.895 -13.280 10.425 18.237 Atomic orbital electron populations 1.69926 1.05300 1.25842 1.53781 1.25214 0.95449 0.98543 1.00048 0.86303 0.78827 0.82979 0.78203 1.20786 1.21560 1.20891 1.19156 0.90816 0.83628 1.45087 0.91625 1.43916 1.32066 1.04234 1.51117 1.21436 0.98575 0.87153 0.92487 1.22226 0.85499 1.00802 0.92624 1.47236 1.30649 1.06729 1.49818 1.15843 0.79962 0.84306 0.79129 1.90869 1.69290 1.31220 1.56877 1.45216 1.24718 1.12374 1.57562 1.20483 0.92037 0.90952 0.90779 0.85771 1.19655 0.99812 0.95044 0.95921 1.21028 0.96435 0.97440 0.96734 1.21161 0.98827 0.98751 0.94813 1.21229 0.99217 0.93064 0.99614 1.21125 0.97767 0.98226 0.96787 1.20988 0.98418 0.97551 0.94259 1.22453 0.84698 0.71413 1.01777 1.92968 1.79530 1.48260 1.97437 1.92984 1.72416 1.54872 1.97693 1.22613 0.97964 0.85808 0.97572 1.21183 0.88915 0.96918 0.89778 0.93365 0.95827 0.91399 0.92010 0.89880 0.75694 0.85689 0.85583 0.85913 0.85736 0.85570 0.86564 0.91592 0.92288 0.88057 0.95793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.91 11.04 55.49 0.61 -24.29 16 2 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 3 Si 0.91 20.77 29.57 -169.99 -5.03 15.74 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.69 9.57 -15.06 -0.14 -6.84 16 8 H 0.07 1.67 7.85 -52.49 -0.41 1.26 16 9 N -0.59 -14.02 2.95 -171.77 -0.51 -14.52 16 10 C 0.13 2.66 6.70 -3.37 -0.02 2.64 16 11 C 0.11 2.02 6.60 -3.36 -0.02 2.00 16 12 N -0.61 -10.71 2.95 -177.94 -0.52 -11.24 16 13 C 0.71 11.96 8.26 -86.93 -0.72 11.24 16 14 O -0.60 -11.51 15.40 5.28 0.08 -11.42 16 15 N -0.74 -10.16 4.86 -59.81 -0.29 -10.45 16 16 C 0.17 2.03 2.46 -69.08 -0.17 1.86 16 17 H 0.12 1.54 7.37 -51.93 -0.38 1.15 16 18 C -0.10 -1.16 4.63 -104.62 -0.48 -1.65 16 19 C -0.10 -1.06 8.31 -39.58 -0.33 -1.39 16 20 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 21 C -0.11 -0.97 10.05 -39.58 -0.40 -1.37 16 22 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 23 C -0.09 -0.93 9.67 -39.59 -0.38 -1.31 16 24 C 0.25 3.23 5.07 37.15 0.19 3.42 16 25 F -0.20 -2.58 17.04 2.25 0.04 -2.54 16 26 F -0.20 -2.81 16.23 2.25 0.04 -2.77 16 27 C 0.08 1.47 6.59 -3.60 -0.02 1.45 16 28 C 0.16 3.49 5.45 -3.59 -0.02 3.47 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 34 H 0.40 5.13 4.30 -40.82 -0.18 4.96 16 35 H 0.13 1.33 6.79 -52.49 -0.36 0.97 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 1.06 8.04 -52.48 -0.42 0.64 16 40 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 42 H 0.06 0.85 5.55 -51.93 -0.29 0.56 16 43 H 0.10 2.47 6.06 -51.93 -0.31 2.15 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -30.43 363.98 -9.15 -39.58 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.64 Total: 5.80 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: -3.41 Total: 10.64 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.71 Total: -60.50 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.07 Total: -5.31 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.43 -9.15 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662008275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.701 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds