Wall clock time and date at job start Tue Mar 31 2020 23:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99721 * 2 1 4 4 H 1.48505 * 109.46965 * 240.00530 * 3 2 1 5 5 H 1.48501 * 109.47386 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47059 * 120.00507 * 3 2 1 7 7 C 1.38806 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00654 * 169.77019 * 7 2 1 9 9 N 1.36942 * 119.99648 * 350.04820 * 7 2 1 10 10 C 1.46964 * 120.59480 * 147.44182 * 9 7 2 11 11 C 1.53811 * 108.40087 * 124.75534 * 10 9 7 12 12 N 1.46969 * 108.57926 * 49.63663 * 11 10 9 13 13 C 1.34769 * 120.59310 * 124.62322 * 12 11 10 14 14 O 1.21594 * 120.00321 * 5.08663 * 13 12 11 15 15 N 1.34777 * 119.99935 * 185.08687 * 13 12 11 16 16 C 1.46508 * 119.99907 * 174.96923 * 15 13 12 17 17 H 1.08998 * 109.47006 * 35.00120 * 16 15 13 18 18 C 1.50698 * 109.46816 * 154.99581 * 16 15 13 19 19 C 1.38238 * 119.99944 * 39.73081 * 18 16 15 20 20 C 1.38242 * 119.99620 * 179.80677 * 19 18 16 21 21 C 1.38230 * 120.00239 * 0.39744 * 20 19 18 22 22 C 1.38238 * 120.00021 * 359.85105 * 21 20 19 23 23 C 1.38232 * 120.00268 * 219.99640 * 18 16 15 24 24 C 1.52994 * 109.47033 * 275.00032 * 16 15 13 25 25 F 1.39901 * 109.47055 * 180.02562 * 24 16 15 26 26 F 1.39905 * 109.46953 * 299.99955 * 24 16 15 27 27 C 1.46963 * 118.81047 * 304.65367 * 12 11 10 28 28 C 1.46969 * 120.59338 * 327.72147 * 9 7 2 29 29 H 0.97000 * 119.99990 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.61354 * 244.54006 * 10 9 7 31 31 H 1.09004 * 109.60634 * 5.05328 * 10 9 7 32 32 H 1.09006 * 109.74004 * 289.85382 * 11 10 9 33 33 H 1.08998 * 109.67904 * 169.39151 * 11 10 9 34 34 H 0.96996 * 120.00396 * 354.96520 * 15 13 12 35 35 H 1.07996 * 120.00249 * 359.97438 * 19 18 16 36 36 H 1.07999 * 119.99300 * 180.23144 * 20 19 18 37 37 H 1.07997 * 120.00063 * 179.84070 * 21 20 19 38 38 H 1.08001 * 120.00134 * 179.97438 * 22 21 20 39 39 H 1.08010 * 119.99759 * 359.97438 * 23 18 16 40 40 H 1.08997 * 109.47390 * 60.00102 * 24 16 15 41 41 H 1.09011 * 109.60953 * 295.47554 * 27 12 11 42 42 H 1.08998 * 109.60869 * 174.96950 * 27 12 11 43 43 H 1.09000 * 109.60701 * 354.94553 * 28 9 7 44 44 H 1.08994 * 109.60733 * 115.28889 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0774 -1.2095 -0.1666 9 7 1.3410 -2.3792 0.2039 10 6 1.7900 -3.6177 -0.4474 11 6 2.0216 -4.6813 0.6393 12 7 0.8379 -4.7274 1.5092 13 6 0.1787 -5.8857 1.7097 14 8 0.6140 -6.9214 1.2446 15 7 -0.9631 -5.8961 2.4257 16 6 -1.7378 -7.1332 2.5512 17 1 -1.0586 -7.9847 2.5917 18 6 -2.5593 -7.0855 3.8137 19 6 -3.1735 -5.9070 4.1945 20 6 -3.9303 -5.8644 5.3506 21 6 -4.0662 -6.9979 6.1300 22 6 -3.4478 -8.1750 5.7518 23 6 -2.6942 -8.2186 4.5938 24 6 -2.6661 -7.2783 1.3438 25 9 -3.4063 -8.4594 1.4639 26 9 -3.5379 -6.1854 1.2918 27 6 0.3855 -3.4877 2.1560 28 6 0.1572 -2.4252 1.0737 29 1 -0.4850 0.8400 0.0004 30 1 1.0258 -3.9628 -1.1437 31 1 2.7205 -3.4323 -0.9840 32 1 2.8995 -4.4192 1.2299 33 1 2.1715 -5.6553 0.1736 34 1 -1.2719 -5.0845 2.8579 35 1 -3.0643 -5.0205 3.5876 36 1 -4.4132 -4.9447 5.6461 37 1 -4.6554 -6.9638 7.0345 38 1 -3.5536 -9.0605 6.3610 39 1 -2.2111 -9.1384 4.2983 40 1 -2.0719 -7.3128 0.4306 41 1 1.1470 -3.1406 2.8546 42 1 -0.5468 -3.6726 2.6895 43 1 0.0092 -1.4521 1.5418 44 1 -0.7211 -2.6843 0.4826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662008275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:27 Heat of formation + Delta-G solvation = -79.568634 kcal Electronic energy + Delta-G solvation = -30318.276365 eV Core-core repulsion = 25906.828709 eV Total energy + Delta-G solvation = -4411.447656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.03458 -48.02373 -41.60941 -40.19215 -38.61362 -36.49609 -35.64607 -33.44531 -32.34962 -31.84899 -31.63088 -29.53970 -28.41055 -25.64335 -24.87422 -24.36998 -23.70541 -22.56817 -21.77483 -20.73058 -19.84972 -18.74284 -18.42940 -18.05636 -18.01913 -17.52860 -17.17767 -16.69706 -16.32112 -15.99954 -15.96678 -15.50135 -15.28612 -15.11752 -15.00756 -14.91867 -14.81314 -14.41474 -14.25695 -14.23849 -13.97036 -13.80428 -13.31381 -13.29290 -13.10915 -12.68111 -12.66352 -12.49908 -12.24961 -12.04679 -12.03196 -11.97598 -11.90567 -11.69288 -11.30204 -10.58615 -10.49252 -9.86020 -9.81316 -9.74455 -8.58704 -7.86860 -5.41585 0.26288 0.46303 1.43450 1.50922 1.51435 1.58440 1.95430 2.50701 2.60319 2.70779 2.97195 3.15905 3.28827 3.29165 3.58550 3.67340 3.95003 3.98516 4.09357 4.19681 4.24313 4.26468 4.28722 4.35366 4.52590 4.58073 4.61159 4.67773 4.74183 4.84723 4.96845 5.07308 5.07853 5.16312 5.24880 5.43209 5.51107 5.55738 5.58742 5.62600 5.66189 5.88487 6.04108 6.39433 6.78094 7.13385 7.37120 7.79066 8.34011 9.17141 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.016095 B = 0.003048 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.201141 B = 9183.890308 C = 9863.558309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.043 4.043 3 Si 0.970 3.030 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.267 4.267 8 H 0.069 0.931 9 N -0.608 5.608 10 C 0.131 3.869 11 C 0.124 3.876 12 N -0.615 5.615 13 C 0.707 3.293 14 O -0.623 6.623 15 N -0.728 5.728 16 C 0.170 3.830 17 H 0.125 0.875 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.126 4.126 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.104 4.104 24 C 0.253 3.747 25 F -0.200 7.200 26 F -0.207 7.207 27 C 0.101 3.899 28 C 0.166 3.834 29 H 0.252 0.748 30 H 0.009 0.991 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.409 0.591 35 H 0.120 0.880 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.137 0.863 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.076 0.924 44 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 -15.004 12.405 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.239 4.239 3 Si 0.798 3.202 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.396 4.396 8 H 0.086 0.914 9 N -0.332 5.332 10 C 0.005 3.995 11 C 0.000 4.000 12 N -0.350 5.350 13 C 0.409 3.591 14 O -0.504 6.504 15 N -0.387 5.387 16 C 0.063 3.937 17 H 0.143 0.857 18 C -0.120 4.120 19 C -0.133 4.133 20 C -0.144 4.144 21 C -0.131 4.131 22 C -0.140 4.140 23 C -0.122 4.122 24 C 0.197 3.803 25 F -0.181 7.181 26 F -0.188 7.188 27 C -0.023 4.023 28 C 0.040 3.960 29 H 0.061 0.939 30 H 0.028 0.972 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.249 0.751 35 H 0.138 0.862 36 H 0.160 0.840 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.155 0.845 40 H 0.133 0.867 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -6.856 -15.567 12.040 20.840 hybrid contribution -0.076 1.577 -0.373 1.622 sum -6.931 -13.990 11.667 19.491 Atomic orbital electron populations 1.70089 1.06577 1.26064 1.55144 1.25916 0.96159 1.01467 1.00359 0.85313 0.77485 0.79076 0.78320 1.20477 1.22140 1.20069 1.19477 0.91225 0.84666 1.44282 0.91353 1.44181 1.32227 1.04703 1.52061 1.21500 0.98265 0.86631 0.93120 1.22039 0.85982 1.00002 0.92018 1.47239 1.30801 1.06965 1.50020 1.15899 0.80388 0.83690 0.79143 1.90854 1.69983 1.31808 1.57799 1.45137 1.23712 1.13295 1.56540 1.20500 0.91814 0.90056 0.91330 0.85745 1.19622 1.00631 0.95934 0.95825 1.21110 0.97336 0.97258 0.97570 1.21429 0.98546 0.99954 0.94422 1.21597 0.98758 0.92557 1.00156 1.21475 0.96829 0.99296 0.96414 1.21224 0.98790 0.97565 0.94632 1.22477 0.84553 0.71141 1.02103 1.92964 1.79525 1.48158 1.97454 1.92967 1.72751 1.55370 1.97747 1.22353 0.99715 0.84343 0.95886 1.20976 0.87612 0.97170 0.90266 0.93925 0.97249 0.90693 0.91107 0.89154 0.75069 0.86199 0.84038 0.83344 0.83224 0.84480 0.86720 0.90970 0.89265 0.90587 0.98409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.45 11.04 21.65 0.24 -52.22 16 2 C -0.04 -2.29 5.06 84.86 0.43 -1.86 16 3 Si 0.97 42.85 29.57 68.60 2.03 44.88 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.27 -13.90 9.57 84.03 0.80 -13.10 16 8 H 0.07 3.46 7.85 -2.91 -0.02 3.44 16 9 N -0.61 -29.09 2.95 -697.35 -2.06 -31.15 16 10 C 0.13 5.34 6.70 86.56 0.58 5.92 16 11 C 0.12 4.31 6.60 86.56 0.57 4.88 16 12 N -0.62 -21.02 2.95 -835.13 -2.46 -23.48 16 13 C 0.71 23.23 8.26 179.06 1.48 24.71 16 14 O -0.62 -23.16 15.40 -4.01 -0.06 -23.22 16 15 N -0.73 -19.31 4.86 -461.41 -2.24 -21.55 16 16 C 0.17 4.05 2.46 44.24 0.11 4.15 16 17 H 0.12 2.97 7.37 -2.39 -0.02 2.95 16 18 C -0.12 -2.54 4.63 -19.87 -0.09 -2.63 16 19 C -0.11 -2.35 8.31 22.27 0.19 -2.16 16 20 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 21 C -0.11 -1.62 10.05 22.27 0.22 -1.40 16 22 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 23 C -0.10 -1.87 9.67 22.27 0.22 -1.65 16 24 C 0.25 6.37 5.07 71.98 0.36 6.73 16 25 F -0.20 -4.99 17.04 44.97 0.77 -4.23 16 26 F -0.21 -5.82 16.23 44.97 0.73 -5.09 16 27 C 0.10 3.42 6.59 86.42 0.57 3.99 16 28 C 0.17 7.42 5.45 86.41 0.47 7.89 16 29 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 30 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 2.89 7.93 -2.38 -0.02 2.87 16 32 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.09 3.03 7.02 -2.39 -0.02 3.02 16 34 H 0.41 9.94 4.30 -92.71 -0.40 9.54 16 35 H 0.12 2.48 6.79 -2.91 -0.02 2.46 16 36 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 37 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 39 H 0.14 2.06 8.04 -2.91 -0.02 2.04 16 40 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 42 H 0.09 2.44 5.55 -2.39 -0.01 2.43 16 43 H 0.08 3.79 6.06 -2.39 -0.01 3.78 16 44 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: -1.00 -64.96 363.98 3.93 -61.03 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.64 Total: 23.04 kcal Atomic # 6 Polarization: 25.64 SS G_CDS: 6.36 Total: 31.99 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -6.52 Total: -128.40 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.06 Total: -23.22 kcal Atomic # 9 Polarization: -10.82 SS G_CDS: 1.50 Total: -9.32 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -64.96 3.93 -61.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662008275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.539 kcal (2) G-P(sol) polarization free energy of solvation -64.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds