Wall clock time and date at job start Tue Mar 31 2020 22:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46492 * 109.47431 * 2 1 4 4 C 1.35312 * 125.87393 * 125.00011 * 3 2 1 5 5 C 1.35344 * 106.17864 * 180.02562 * 4 3 2 6 6 C 1.50706 * 126.74842 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47037 * 95.00215 * 6 5 4 8 8 C 1.46901 * 110.99893 * 179.97438 * 7 6 5 9 9 H 1.09004 * 110.91512 * 37.44282 * 8 7 6 10 10 C 1.55151 * 111.00682 * 161.34738 * 8 7 6 11 11 C 1.54338 * 103.02507 * 153.37920 * 10 8 7 12 12 N 1.47021 * 107.26155 * 338.14263 * 11 10 8 13 13 C 1.34781 * 125.64992 * 178.84864 * 12 11 10 14 14 O 1.21274 * 120.00344 * 179.69253 * 13 12 11 15 15 C 1.50701 * 119.99423 * 359.69048 * 13 12 11 16 16 S 1.81001 * 109.46896 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99894 * 180.02562 * 16 15 13 18 18 H 1.07991 * 120.00323 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99766 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00034 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46807 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.46906 * 300.00462 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47422 * 108.70588 * 358.58342 * 12 11 10 26 26 N 1.33769 * 106.49978 * 0.25979 * 5 4 3 27 27 N 1.28635 * 108.87962 * 359.56766 * 26 5 4 28 28 H 1.08999 * 109.46991 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46885 * 299.99680 * 1 2 3 30 30 H 1.09000 * 109.46734 * 59.99958 * 1 2 3 31 31 H 1.09008 * 109.47133 * 239.99706 * 2 1 3 32 32 H 1.09006 * 109.47162 * 120.00130 * 2 1 3 33 33 H 1.08007 * 126.90583 * 0.05462 * 4 3 2 34 34 H 1.08995 * 109.47078 * 334.99629 * 6 5 4 35 35 H 1.09004 * 109.46855 * 215.00009 * 6 5 4 36 36 H 1.00903 * 111.00110 * 303.94870 * 7 6 5 37 37 H 1.09003 * 110.72492 * 271.93984 * 10 8 7 38 38 H 1.09003 * 110.72257 * 35.03420 * 10 8 7 39 39 H 1.08996 * 109.99183 * 218.66499 * 11 10 8 40 40 H 1.08998 * 109.77679 * 97.49207 * 11 10 8 41 41 H 1.09001 * 109.47454 * 60.00304 * 15 13 12 42 42 H 1.09003 * 109.47322 * 299.99933 * 15 13 12 43 43 H 0.97001 * 119.99662 * 179.97438 * 20 19 17 44 44 H 1.09003 * 110.37421 * 143.19407 * 25 12 11 45 45 H 1.08997 * 110.36947 * 265.51777 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8756 1.9190 0.8982 5 6 3.0534 3.2078 0.5248 6 6 3.9228 4.2324 1.2071 7 7 5.2381 4.2712 0.5542 8 6 6.1143 5.2618 1.1938 9 1 5.9624 5.2763 2.2731 10 6 7.6025 4.9955 0.8451 11 6 8.2444 6.3935 0.9692 12 7 7.1665 7.3829 0.8247 13 6 7.3137 8.7208 0.8949 14 8 6.3510 9.4449 0.7546 15 6 8.6745 9.3168 1.1477 16 16 8.5448 11.1217 1.1870 17 6 10.2290 11.5430 1.4884 18 1 10.9707 10.7645 1.5887 19 6 10.6023 12.8755 1.5968 20 7 9.6981 13.8243 1.4750 21 14 12.3877 13.3221 1.9170 22 1 12.5231 14.7992 1.9889 23 1 12.8254 12.7211 3.2024 24 1 13.2338 12.8012 0.8134 25 6 5.8991 6.6695 0.5839 26 7 2.3015 3.3945 -0.5657 27 7 1.7053 2.2918 -0.8541 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.3276 1.4201 1.7428 34 1 4.0456 3.9640 2.2563 35 1 3.4526 5.2133 1.1356 36 1 5.6669 3.3579 0.5502 37 1 8.0469 4.2999 1.5570 38 1 7.6984 4.6171 -0.1727 39 1 8.9851 6.5346 0.1822 40 1 8.7147 6.4979 1.9470 41 1 9.3557 9.0184 0.3508 42 1 9.0558 8.9593 2.1043 43 1 9.9590 14.7555 1.5512 44 1 5.0759 7.1784 1.0855 45 1 5.7037 6.5936 -0.4857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662461785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:27 Heat of formation + Delta-G solvation = 71.879403 kcal Electronic energy + Delta-G solvation = -25569.232954 eV Core-core repulsion = 21750.485715 eV Total energy + Delta-G solvation = -3818.747239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.62067 -39.80479 -37.72547 -36.20333 -35.16666 -32.39479 -32.13596 -31.32428 -30.38938 -29.58271 -27.75056 -25.71300 -25.34632 -25.17769 -23.04553 -22.18039 -21.18811 -20.87505 -19.27120 -17.88910 -17.64205 -16.96621 -16.65115 -16.52662 -15.63765 -15.36258 -15.10189 -15.04219 -14.77722 -14.64833 -14.44208 -13.93997 -13.74069 -13.57253 -13.23544 -13.09217 -12.93201 -12.56524 -12.50630 -12.41463 -12.26125 -11.93542 -11.74949 -11.62732 -11.32167 -11.09405 -11.01626 -11.00521 -10.96200 -10.74168 -10.44646 -9.79073 -9.64440 -9.35077 -9.02515 -8.84535 -8.40487 -8.19078 -6.46049 -6.17840 -3.88358 1.18823 1.88487 2.15122 2.95141 3.13963 3.25866 3.28070 3.31578 3.62215 3.75277 3.94143 4.00660 4.14661 4.20977 4.24612 4.39313 4.44531 4.50793 4.61503 4.82275 4.85151 4.90806 5.00859 5.07457 5.15842 5.17179 5.23849 5.28936 5.41799 5.51553 5.53720 5.56490 5.66981 5.76575 5.81310 5.82323 5.96939 6.01609 6.15665 6.18637 6.44774 6.67759 6.96350 7.62511 7.74882 8.19623 8.38500 8.63497 9.27023 10.89533 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.043196 B = 0.001584 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.054240 B =17677.690072 C =18140.843153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 N -0.293 5.293 4 C -0.048 4.048 5 C -0.014 4.014 6 C 0.144 3.856 7 N -0.670 5.670 8 C 0.073 3.927 9 H 0.064 0.936 10 C -0.130 4.130 11 C 0.105 3.895 12 N -0.627 5.627 13 C 0.548 3.452 14 O -0.515 6.515 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.283 1.283 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.119 3.881 26 N -0.246 5.246 27 N -0.084 5.084 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.188 0.812 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.344 0.656 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.075 0.925 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.087 -34.444 1.727 36.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.087 5.087 4 C -0.200 4.200 5 C -0.153 4.153 6 C 0.013 3.987 7 N -0.302 5.302 8 C -0.037 4.037 9 H 0.082 0.918 10 C -0.168 4.168 11 C -0.019 4.019 12 N -0.365 5.365 13 C 0.337 3.663 14 O -0.389 6.389 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.208 1.208 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.005 4.005 26 N -0.113 5.113 27 N -0.064 5.064 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.205 0.795 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.163 0.837 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.599 -32.339 -0.238 35.483 hybrid contribution 3.136 -1.599 2.173 4.137 sum -11.462 -33.938 1.935 35.874 Atomic orbital electron populations 1.22088 0.92556 1.03802 1.04192 1.22108 0.97080 0.76474 1.05254 1.47489 1.30479 1.12059 1.18655 1.23408 1.00715 0.95780 1.00116 1.21816 1.02469 0.94098 0.96926 1.20153 0.87708 0.97303 0.93491 1.60228 1.02610 1.10865 1.56536 1.22674 0.91902 0.92592 0.96574 0.91834 1.22782 0.94121 0.96622 1.03324 1.21922 0.90784 0.87162 1.01986 1.48440 1.09116 1.05095 1.73852 1.20005 0.91022 0.79623 0.75684 1.90712 1.41232 1.58562 1.48354 1.23504 0.95847 1.05913 1.04412 1.85415 1.12943 0.90913 1.94114 1.22823 0.93639 0.94892 1.57040 0.91006 1.24987 0.98575 0.95268 0.94698 1.70014 1.33484 1.00306 1.46459 0.86230 0.82964 0.77441 0.78893 1.20814 1.19967 1.19949 1.22094 0.87121 0.89936 1.01339 1.75153 1.07853 1.15493 1.12826 1.78336 1.20748 0.92754 1.14558 0.89812 0.91689 0.90524 0.88209 0.87693 0.79513 0.93081 0.88654 0.83678 0.90133 0.89520 0.91062 0.91277 0.89310 0.89363 0.92145 0.90690 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.43 10.04 37.16 0.37 -0.06 16 2 C 0.11 0.27 7.17 -4.05 -0.03 0.25 16 3 N -0.29 -2.02 3.44 -61.26 -0.21 -2.23 16 4 C -0.05 -0.30 11.50 -17.05 -0.20 -0.49 16 5 C -0.01 -0.13 6.76 -82.78 -0.56 -0.69 16 6 C 0.14 1.14 6.12 -4.97 -0.03 1.10 16 7 N -0.67 -5.42 6.36 -105.72 -0.67 -6.09 16 8 C 0.07 0.65 3.32 -65.56 -0.22 0.43 16 9 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 10 C -0.13 -1.00 6.42 -24.89 -0.16 -1.16 16 11 C 0.11 1.14 6.49 -3.06 -0.02 1.12 16 12 N -0.63 -9.50 3.33 -170.52 -0.57 -10.06 16 13 C 0.55 11.07 7.87 -10.98 -0.09 10.98 16 14 O -0.51 -12.50 16.12 5.56 0.09 -12.41 16 15 C -0.15 -3.09 5.35 36.01 0.19 -2.89 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.54 -15.47 9.50 30.94 0.29 -15.18 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.48 13.22 55.49 0.73 -25.74 16 21 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.12 1.56 6.55 -2.53 -0.02 1.55 16 26 N -0.25 -3.09 12.41 33.29 0.41 -2.67 16 27 N -0.08 -0.93 12.91 60.35 0.78 -0.15 16 28 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.10 0.16 8.14 -51.92 -0.42 -0.27 16 32 H 0.10 -0.05 8.07 -51.93 -0.42 -0.46 16 33 H 0.19 0.37 8.06 -52.48 -0.42 -0.06 16 34 H 0.05 0.28 8.09 -51.93 -0.42 -0.14 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.34 2.14 8.52 -39.29 -0.33 1.81 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 42 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 43 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.07 1.08 8.04 -51.93 -0.42 0.67 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 394.31 15.07 5.94 5.94 Total: -1.00 -38.85 394.31 -8.32 -47.17 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -7.04 Total: -3.41 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.55 Total: -3.00 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.48 Total: -46.94 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.85 -8.32 -47.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662461785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.047 kcal (2) G-P(sol) polarization free energy of solvation -38.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds