Wall clock time and date at job start Tue Mar 31 2020 22:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46492 * 109.47431 * 2 1 4 4 C 1.35312 * 125.87393 * 125.00011 * 3 2 1 5 5 C 1.35344 * 106.17864 * 180.02562 * 4 3 2 6 6 C 1.50706 * 126.74842 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47037 * 95.00215 * 6 5 4 8 8 C 1.46901 * 110.99893 * 179.97438 * 7 6 5 9 9 H 1.09004 * 110.91512 * 37.44282 * 8 7 6 10 10 C 1.55151 * 111.00682 * 161.34738 * 8 7 6 11 11 C 1.54338 * 103.02507 * 153.37920 * 10 8 7 12 12 N 1.47021 * 107.26155 * 338.14263 * 11 10 8 13 13 C 1.34781 * 125.64992 * 178.84864 * 12 11 10 14 14 O 1.21274 * 120.00344 * 179.69253 * 13 12 11 15 15 C 1.50701 * 119.99423 * 359.69048 * 13 12 11 16 16 S 1.81001 * 109.46896 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99894 * 180.02562 * 16 15 13 18 18 H 1.07991 * 120.00323 * 359.97438 * 17 16 15 19 19 C 1.38805 * 119.99766 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00034 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46807 * 179.97438 * 21 19 17 23 23 H 1.48497 * 109.46906 * 300.00462 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47422 * 108.70588 * 358.58342 * 12 11 10 26 26 N 1.33769 * 106.49978 * 0.25979 * 5 4 3 27 27 N 1.28635 * 108.87962 * 359.56766 * 26 5 4 28 28 H 1.08999 * 109.46991 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46885 * 299.99680 * 1 2 3 30 30 H 1.09000 * 109.46734 * 59.99958 * 1 2 3 31 31 H 1.09008 * 109.47133 * 239.99706 * 2 1 3 32 32 H 1.09006 * 109.47162 * 120.00130 * 2 1 3 33 33 H 1.08007 * 126.90583 * 0.05462 * 4 3 2 34 34 H 1.08995 * 109.47078 * 334.99629 * 6 5 4 35 35 H 1.09004 * 109.46855 * 215.00009 * 6 5 4 36 36 H 1.00903 * 111.00110 * 303.94870 * 7 6 5 37 37 H 1.09003 * 110.72492 * 271.93984 * 10 8 7 38 38 H 1.09003 * 110.72257 * 35.03420 * 10 8 7 39 39 H 1.08996 * 109.99183 * 218.66499 * 11 10 8 40 40 H 1.08998 * 109.77679 * 97.49207 * 11 10 8 41 41 H 1.09001 * 109.47454 * 60.00304 * 15 13 12 42 42 H 1.09003 * 109.47322 * 299.99933 * 15 13 12 43 43 H 0.97001 * 119.99662 * 179.97438 * 20 19 17 44 44 H 1.09003 * 110.37421 * 143.19407 * 25 12 11 45 45 H 1.08997 * 110.36947 * 265.51777 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8756 1.9190 0.8982 5 6 3.0534 3.2078 0.5248 6 6 3.9228 4.2324 1.2071 7 7 5.2381 4.2712 0.5542 8 6 6.1143 5.2618 1.1938 9 1 5.9624 5.2763 2.2731 10 6 7.6025 4.9955 0.8451 11 6 8.2444 6.3935 0.9692 12 7 7.1665 7.3829 0.8247 13 6 7.3137 8.7208 0.8949 14 8 6.3510 9.4449 0.7546 15 6 8.6745 9.3168 1.1477 16 16 8.5448 11.1217 1.1870 17 6 10.2290 11.5430 1.4884 18 1 10.9707 10.7645 1.5887 19 6 10.6023 12.8755 1.5968 20 7 9.6981 13.8243 1.4750 21 14 12.3877 13.3221 1.9170 22 1 12.5231 14.7992 1.9889 23 1 12.8254 12.7211 3.2024 24 1 13.2338 12.8012 0.8134 25 6 5.8991 6.6695 0.5839 26 7 2.3015 3.3945 -0.5657 27 7 1.7053 2.2918 -0.8541 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.3276 1.4201 1.7428 34 1 4.0456 3.9640 2.2563 35 1 3.4526 5.2133 1.1356 36 1 5.6669 3.3579 0.5502 37 1 8.0469 4.2999 1.5570 38 1 7.6984 4.6171 -0.1727 39 1 8.9851 6.5346 0.1822 40 1 8.7147 6.4979 1.9470 41 1 9.3557 9.0184 0.3508 42 1 9.0558 8.9593 2.1043 43 1 9.9590 14.7555 1.5512 44 1 5.0759 7.1784 1.0855 45 1 5.7037 6.5936 -0.4857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662461785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:26 Heat of formation + Delta-G solvation = 41.708821 kcal Electronic energy + Delta-G solvation = -25570.541248 eV Core-core repulsion = 21750.485715 eV Total energy + Delta-G solvation = -3820.055533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.19333 -41.04878 -38.90997 -36.82251 -35.87805 -34.57875 -33.02190 -31.76725 -31.36541 -30.78167 -28.81266 -27.65291 -26.39512 -25.54324 -24.02690 -22.70069 -21.83675 -21.58177 -20.67627 -19.58931 -18.27913 -18.04866 -17.72731 -17.32455 -16.87533 -16.63228 -16.37807 -15.96574 -15.64514 -15.61659 -15.54900 -15.03636 -14.73501 -14.51588 -14.23773 -14.12323 -13.78252 -13.65229 -13.46555 -13.28278 -13.15259 -12.96821 -12.85221 -12.74950 -12.62480 -12.47269 -12.26205 -12.04698 -11.77552 -11.74311 -11.61975 -11.11877 -11.00188 -10.98960 -10.28174 -10.22211 -9.71515 -9.41891 -8.68195 -8.33438 -6.12932 0.68724 1.23686 1.43771 1.45349 1.49084 1.55811 1.56013 1.57068 2.08616 2.28374 3.00533 3.15788 3.24918 3.39797 3.51109 3.69052 3.70808 3.90415 3.98272 4.01015 4.12071 4.16912 4.24329 4.30064 4.34988 4.42826 4.44536 4.48885 4.59401 4.69150 4.74439 4.79469 4.84690 4.92152 4.99604 5.02715 5.13701 5.18568 5.27747 5.33981 5.41955 5.74454 5.98657 6.20348 6.37550 6.50812 7.07088 7.11179 7.58031 8.75733 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.043196 B = 0.001584 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.054240 B =17677.690072 C =18140.843153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.286 5.286 4 C -0.024 4.024 5 C -0.037 4.037 6 C 0.149 3.851 7 N -0.679 5.679 8 C 0.090 3.910 9 H 0.078 0.922 10 C -0.114 4.114 11 C 0.091 3.909 12 N -0.617 5.617 13 C 0.543 3.457 14 O -0.571 6.571 15 C -0.117 4.117 16 S -0.155 6.155 17 C -0.547 4.547 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.001 2.999 22 H -0.279 1.279 23 H -0.260 1.260 24 H -0.262 1.262 25 C 0.112 3.888 26 N -0.303 5.303 27 N -0.125 5.125 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.110 0.890 32 H 0.146 0.854 33 H 0.237 0.763 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.361 0.639 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.052 0.948 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.522 -38.741 3.566 40.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.017 4.017 3 N -0.080 5.080 4 C -0.176 4.176 5 C -0.177 4.177 6 C 0.018 3.982 7 N -0.313 5.313 8 C -0.020 4.020 9 H 0.096 0.904 10 C -0.152 4.152 11 C -0.031 4.031 12 N -0.352 5.352 13 C 0.332 3.668 14 O -0.450 6.450 15 C -0.268 4.268 16 S 0.072 5.928 17 C -0.694 4.694 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.204 1.204 23 H -0.184 1.184 24 H -0.186 1.186 25 C -0.012 4.012 26 N -0.168 5.168 27 N -0.104 5.104 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.128 0.872 32 H 0.164 0.836 33 H 0.253 0.747 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.182 0.818 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.040 -36.738 1.577 38.692 hybrid contribution 2.239 -0.461 1.588 2.783 sum -9.801 -37.198 3.165 38.598 Atomic orbital electron populations 1.22070 0.92982 1.04897 1.02428 1.22575 0.96799 0.74541 1.07756 1.47907 1.29630 1.12823 1.17660 1.24071 0.98887 0.94610 1.00068 1.22125 1.02986 0.95833 0.96784 1.20108 0.87161 0.95840 0.95059 1.60032 1.02665 1.11605 1.57005 1.22475 0.92979 0.89776 0.96812 0.90374 1.22776 0.92511 0.95086 1.04815 1.22365 0.89927 0.87665 1.03152 1.48386 1.11452 1.04093 1.71261 1.19853 0.89919 0.81228 0.75844 1.90687 1.42483 1.60466 1.51339 1.23284 0.97073 1.00251 1.06191 1.85649 1.14546 0.98101 1.94497 1.23164 0.93432 0.95724 1.57107 0.89758 1.26163 1.03996 0.94998 0.93970 1.70192 1.36261 1.00785 1.47611 0.84975 0.76148 0.77219 0.79464 1.20422 1.18447 1.18624 1.22244 0.85692 0.92632 1.00608 1.75080 1.09666 1.17003 1.15095 1.78249 1.22255 0.93448 1.16484 0.87245 0.92572 0.93148 0.87231 0.83626 0.74651 0.89850 0.91575 0.81785 0.86255 0.89114 0.90426 0.89657 0.87555 0.87182 0.91989 0.92926 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.04 71.98 0.72 0.09 16 2 C 0.10 0.22 7.17 86.38 0.62 0.84 16 3 N -0.29 -3.45 3.44 -347.73 -1.20 -4.65 16 4 C -0.02 -0.22 11.50 83.49 0.96 0.75 16 5 C -0.04 -0.64 6.76 41.60 0.28 -0.36 16 6 C 0.15 2.15 6.12 85.56 0.52 2.67 16 7 N -0.68 -9.52 6.36 -488.40 -3.11 -12.63 16 8 C 0.09 1.37 3.32 46.31 0.15 1.52 16 9 H 0.08 1.02 7.92 -2.38 -0.02 1.00 16 10 C -0.11 -1.28 6.42 31.79 0.20 -1.07 16 11 C 0.09 1.70 6.49 86.73 0.56 2.26 16 12 N -0.62 -18.32 3.33 -811.78 -2.70 -21.02 16 13 C 0.54 22.38 7.87 87.66 0.69 23.07 16 14 O -0.57 -29.31 16.12 -3.01 -0.05 -29.36 16 15 C -0.12 -4.92 5.35 71.24 0.38 -4.54 16 16 S -0.16 -8.95 20.57 -56.49 -1.16 -10.11 16 17 C -0.55 -31.75 9.50 67.96 0.65 -31.10 16 18 H 0.08 4.50 7.80 -2.92 -0.02 4.48 16 19 C 0.01 0.77 5.49 84.86 0.47 1.24 16 20 N -0.91 -57.01 13.22 21.65 0.29 -56.72 16 21 Si 1.00 43.90 29.55 68.60 2.03 45.92 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 25 C 0.11 2.97 6.55 86.86 0.57 3.54 16 26 N -0.30 -7.87 12.41 -48.60 -0.60 -8.47 16 27 N -0.13 -2.82 12.91 37.02 0.48 -2.34 16 28 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.05 0.47 8.12 -2.39 -0.02 0.45 16 31 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 32 H 0.15 -0.84 8.07 -2.38 -0.02 -0.86 16 33 H 0.24 -0.45 8.06 -2.91 -0.02 -0.48 16 34 H 0.08 0.65 8.09 -2.39 -0.02 0.63 16 35 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.36 3.16 8.52 -89.69 -0.76 2.40 16 37 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 42 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 43 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 44 H 0.05 1.62 8.04 -2.39 -0.02 1.60 16 45 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -92.97 394.31 0.98 -91.98 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.23 Total: 8.48 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 6.78 Total: -1.09 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -6.84 Total: -105.83 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.05 Total: -29.36 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.16 Total: -10.11 kcal Total: -92.97 0.98 -91.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662461785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.691 kcal (2) G-P(sol) polarization free energy of solvation -92.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds