Wall clock time and date at job start Tue Mar 31 2020 22:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35498 * 126.98319 * 2 1 4 4 N 1.30514 * 107.30614 * 180.22707 * 3 2 1 5 5 N 1.28590 * 109.67775 * 359.77079 * 4 3 2 6 6 C 1.30522 * 109.67244 * 0.02562 * 5 4 3 7 7 C 1.50705 * 126.34883 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.46879 * 90.01996 * 7 6 5 9 9 C 1.46899 * 110.99773 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47280 * 180.02562 * 9 8 7 11 11 H 1.09000 * 110.91172 * 302.55442 * 10 9 8 12 12 C 1.55552 * 110.96662 * 178.64958 * 10 9 8 13 13 C 1.54325 * 102.75696 * 206.40110 * 12 10 9 14 14 N 1.47018 * 107.40412 * 22.23822 * 13 12 10 15 15 C 1.34775 * 125.65103 * 180.94532 * 14 13 12 16 16 O 1.21283 * 120.00490 * 180.02562 * 15 14 13 17 17 C 1.50699 * 119.99715 * 0.02633 * 15 14 13 18 18 S 1.81003 * 109.47214 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00149 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00161 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00317 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99442 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00231 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47149 * 89.99777 * 23 21 19 25 25 H 1.48497 * 109.46752 * 209.99851 * 23 21 19 26 26 H 1.48499 * 109.46934 * 329.99721 * 23 21 19 27 27 C 1.47430 * 108.70532 * 0.98338 * 14 13 12 28 28 H 1.09003 * 109.46883 * 270.15956 * 1 2 3 29 29 H 1.09002 * 109.47261 * 30.15136 * 1 2 3 30 30 H 1.08994 * 109.47319 * 150.15350 * 1 2 3 31 31 H 1.08001 * 126.34687 * 0.02562 * 3 2 1 32 32 H 1.08993 * 109.46843 * 330.02001 * 7 6 5 33 33 H 1.08996 * 109.46818 * 210.02207 * 7 6 5 34 34 H 1.00892 * 111.00543 * 303.95596 * 8 7 6 35 35 H 1.08998 * 109.47202 * 60.00223 * 9 8 7 36 36 H 1.09004 * 109.47168 * 300.00405 * 9 8 7 37 37 H 1.08993 * 110.83076 * 88.08322 * 12 10 9 38 38 H 1.09000 * 110.77660 * 324.68888 * 12 10 9 39 39 H 1.09002 * 109.88192 * 262.74262 * 13 12 10 40 40 H 1.09000 * 109.88128 * 141.73114 * 13 12 10 41 41 H 1.09003 * 109.47454 * 300.00129 * 17 15 14 42 42 H 1.09003 * 109.47508 * 59.99708 * 17 15 14 43 43 H 0.97004 * 119.99578 * 179.97438 * 22 21 19 44 44 H 1.08997 * 110.36526 * 94.70985 * 27 14 13 45 45 H 1.08992 * 110.36633 * 216.92450 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5090 0.6429 -0.0049 5 7 3.5091 -0.6430 -0.0032 6 6 2.2800 -1.0824 0.0024 7 6 1.8476 -2.5261 0.0057 8 7 1.7125 -2.9936 1.3917 9 6 1.2907 -4.4001 1.4340 10 6 1.1605 -4.8499 2.8906 11 1 2.0998 -4.7115 3.4260 12 6 0.6818 -6.3275 2.9762 13 6 -0.0235 -6.3783 4.3479 14 7 -0.4077 -5.0026 4.6960 15 6 -1.0319 -4.6241 5.8290 16 8 -1.3021 -3.4559 6.0115 17 6 -1.3940 -5.6526 6.8693 18 16 -2.2141 -4.8386 8.2626 19 6 -2.5178 -6.2331 9.2960 20 1 -2.2086 -7.2180 8.9786 21 6 -3.1543 -6.0658 10.5180 22 7 -3.5307 -4.8653 10.9051 23 14 -3.4756 -7.5440 11.6139 24 1 -2.3200 -7.7456 12.5246 25 1 -4.7028 -7.3080 12.4161 26 1 -3.6594 -8.7535 10.7722 27 6 0.0019 -4.1055 3.6001 28 1 -0.3633 0.0029 1.0277 29 1 -0.3634 0.8886 -0.5162 30 1 -0.3633 -0.8913 -0.5114 31 1 1.9703 2.1170 0.0004 32 1 2.5939 -3.1300 -0.5104 33 1 0.8888 -2.6192 -0.5044 34 1 2.5706 -2.8576 1.9045 35 1 2.0328 -5.0174 0.9277 36 1 0.3279 -4.5059 0.9340 37 1 1.5299 -7.0117 2.9530 38 1 -0.0198 -6.5537 2.1732 39 1 0.6579 -6.7746 5.1007 40 1 -0.9120 -7.0066 4.2848 41 1 -2.0666 -6.3905 6.4320 42 1 -0.4892 -6.1488 7.2202 43 1 -3.9759 -4.7485 11.7590 44 1 -0.8265 -3.9473 2.9097 45 1 0.3493 -3.1528 3.9995 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662596986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:27 Heat of formation + Delta-G solvation = 23.083997 kcal Electronic energy + Delta-G solvation = -25964.279123 eV Core-core repulsion = 22143.415957 eV Total energy + Delta-G solvation = -3820.863166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.07004 -41.03670 -38.88935 -37.07952 -35.88340 -34.59962 -33.63184 -31.84751 -30.81494 -29.89695 -28.47055 -27.74216 -27.14223 -25.20458 -23.51424 -23.31487 -21.89756 -21.24471 -20.68373 -19.55824 -18.15109 -17.98316 -17.54364 -17.31851 -16.90288 -16.88128 -16.44740 -16.16407 -15.94822 -15.62116 -15.36192 -14.98437 -14.62192 -14.40176 -14.25714 -14.20823 -13.98981 -13.76133 -13.42396 -13.27994 -13.16274 -13.10290 -12.89745 -12.62212 -12.60732 -12.55736 -12.06890 -11.94559 -11.72423 -11.56819 -11.35005 -11.15335 -11.08824 -10.96743 -10.35581 -10.29920 -9.66497 -9.45876 -8.69800 -8.35715 -6.14760 0.82244 1.23893 1.42188 1.44922 1.55984 1.56382 1.64570 1.83045 2.12850 2.26498 2.98307 3.02815 3.25040 3.40771 3.64028 3.65809 3.73587 3.86735 3.90717 3.97172 4.09257 4.20623 4.32411 4.35483 4.40995 4.44216 4.45140 4.52011 4.64444 4.69703 4.74570 4.78372 4.83825 4.95349 4.99735 5.03216 5.13361 5.17813 5.33317 5.40351 5.45903 5.86828 5.98896 6.18629 6.22109 6.41698 7.05134 7.12465 7.71278 8.73654 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.020651 B = 0.001875 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.538585 B =14932.152417 C =15855.871383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.465 5.465 3 C 0.157 3.843 4 N -0.352 5.352 5 N -0.339 5.339 6 C 0.176 3.824 7 C 0.152 3.848 8 N -0.698 5.698 9 C 0.080 3.920 10 C -0.089 4.089 11 H 0.080 0.920 12 C -0.109 4.109 13 C 0.087 3.913 14 N -0.620 5.620 15 C 0.543 3.457 16 O -0.570 6.570 17 C -0.119 4.119 18 S -0.153 6.153 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.001 2.999 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.257 1.257 27 C 0.121 3.879 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.255 0.745 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.344 0.656 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.271 0.729 44 H 0.072 0.928 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.340 -0.640 -28.997 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.154 5.154 3 C -0.132 4.132 4 N -0.191 5.191 5 N -0.180 5.180 6 C -0.093 4.093 7 C 0.021 3.979 8 N -0.330 5.330 9 C -0.048 4.048 10 C -0.108 4.108 11 H 0.098 0.902 12 C -0.147 4.147 13 C -0.035 4.035 14 N -0.355 5.355 15 C 0.331 3.669 16 O -0.449 6.449 17 C -0.270 4.270 18 S 0.074 5.926 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.180 1.180 27 C -0.001 4.001 28 H 0.102 0.898 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.271 0.729 32 H 0.092 0.908 33 H 0.134 0.866 34 H 0.162 0.838 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.656 1.447 -28.504 29.825 hybrid contribution -0.519 -1.717 0.795 1.962 sum 8.136 -0.270 -27.709 28.880 Atomic orbital electron populations 1.22438 0.72552 1.07106 1.05219 1.46393 1.10762 1.05858 1.52410 1.27177 0.86397 0.96707 1.02877 1.74130 1.20664 1.03580 1.20688 1.74127 1.19352 1.03903 1.20633 1.25156 0.86850 0.93700 1.03632 1.20265 1.02742 0.83569 0.91294 1.60462 1.39152 1.21278 1.12117 1.21904 1.02192 0.86447 0.94279 1.22382 0.97167 0.95130 0.96155 0.90172 1.22738 1.01452 0.95510 0.94972 1.22379 1.00434 0.81906 0.98810 1.48538 1.58083 1.11147 1.17715 1.19779 0.76917 0.88461 0.81753 1.90680 1.55158 1.20737 1.78367 1.23298 1.04658 1.01030 0.98002 1.85593 1.75483 1.15681 1.15863 1.23184 1.45243 0.94570 1.06321 0.89891 1.26167 0.94232 1.00262 0.98607 1.70191 1.38539 1.23990 1.22055 0.84925 0.77994 0.77325 0.77557 1.19317 1.20223 1.18049 1.22229 0.97274 0.93184 0.87369 0.89812 0.86464 0.87460 0.72927 0.90814 0.86638 0.83842 0.91908 0.88813 0.87357 0.88222 0.90958 0.90352 0.87546 0.87808 0.91964 0.91024 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 11.04 127.77 1.41 1.71 16 2 N -0.46 -6.03 3.15 -542.07 -1.71 -7.73 16 3 C 0.16 2.43 12.74 180.11 2.30 4.72 16 4 N -0.35 -8.75 12.21 -59.99 -0.73 -9.49 16 5 N -0.34 -8.47 12.21 -50.15 -0.61 -9.09 16 6 C 0.18 2.99 7.54 137.98 1.04 4.03 16 7 C 0.15 1.49 6.04 85.56 0.52 2.00 16 8 N -0.70 -8.02 6.31 -517.93 -3.27 -11.28 16 9 C 0.08 0.60 5.14 86.30 0.44 1.04 16 10 C -0.09 -1.09 3.24 -9.26 -0.03 -1.12 16 11 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 12 C -0.11 -0.99 6.45 31.92 0.21 -0.78 16 13 C 0.09 1.52 6.47 86.73 0.56 2.08 16 14 N -0.62 -17.12 3.33 -811.80 -2.70 -19.82 16 15 C 0.54 21.52 7.87 87.66 0.69 22.21 16 16 O -0.57 -28.10 16.12 -3.04 -0.05 -28.15 16 17 C -0.12 -4.93 5.35 71.24 0.38 -4.55 16 18 S -0.15 -8.72 20.57 -56.49 -1.16 -9.89 16 19 C -0.55 -31.45 9.50 67.95 0.65 -30.81 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.69 5.49 84.86 0.47 1.15 16 22 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 23 Si 1.00 43.64 29.55 68.60 2.03 45.66 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 27 C 0.12 2.68 6.21 86.85 0.54 3.22 16 28 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.11 0.14 7.19 -2.39 -0.02 0.12 16 31 H 0.25 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.12 0.53 7.21 -2.39 -0.02 0.52 16 34 H 0.34 5.02 8.72 -89.70 -0.78 4.24 16 35 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.09 0.49 8.10 -2.38 -0.02 0.47 16 37 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.10 0.57 8.05 -2.39 -0.02 0.55 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 42 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 43 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 44 H 0.07 1.48 8.00 -2.39 -0.02 1.46 16 45 H 0.05 1.40 8.03 -2.39 -0.02 1.38 16 Total: -1.00 -91.03 391.97 1.46 -89.56 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.22 Total: 11.40 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 9.17 Total: 4.93 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -8.73 Total: -113.52 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.05 Total: -28.15 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.89 kcal Total: -91.03 1.46 -89.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662596986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.648 kcal (2) G-P(sol) polarization free energy of solvation -91.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds