Wall clock time and date at job start Tue Mar 31 2020 22:29:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.35630 * 125.67873 * 2 1
4 4 C 1.35517 * 108.84868 * 179.97438 * 3 2 1
5 5 Cl 1.73604 * 126.07075 * 180.02562 * 4 3 2
6 6 C 1.39889 * 107.85483 * 359.76366 * 4 3 2
7 7 C 1.37639 * 125.67318 * 179.97438 * 2 1 3
8 8 C 1.46667 * 126.22169 * 0.02562 * 7 2 1
9 9 O 1.21692 * 120.00768 * 355.18780 * 8 7 2
10 10 N 1.34781 * 119.99573 * 175.46014 * 8 7 2
11 11 C 1.46511 * 119.99676 * 184.30765 * 10 8 7
12 12 C 1.53000 * 109.46839 * 179.97438 * 11 10 8
13 13 C 1.52995 * 109.47053 * 180.02562 * 12 11 10
14 14 C 1.53002 * 109.47493 * 174.88283 * 13 12 11
15 15 H 1.09004 * 109.87248 * 304.87238 * 14 13 12
16 16 C 1.54320 * 109.88466 * 183.84980 * 14 13 12
17 17 C 1.55161 * 102.94247 * 218.38677 * 16 14 13
18 18 C 1.54911 * 101.57644 * 35.50624 * 17 16 14
19 19 N 1.47023 * 109.88161 * 65.88152 * 14 13 12
20 20 C 1.36934 * 125.64733 * 298.31806 * 19 14 13
21 21 H 1.08005 * 120.00438 * 337.37401 * 20 19 14
22 22 C 1.38816 * 120.00022 * 157.37682 * 20 19 14
23 23 N 1.31621 * 120.00096 * 159.98237 * 22 20 19
24 24 Si 1.86801 * 119.99921 * 339.98172 * 22 20 19
25 25 H 1.48505 * 109.46878 * 86.41738 * 24 22 20
26 26 H 1.48496 * 109.47143 * 206.41862 * 24 22 20
27 27 H 1.48494 * 109.47141 * 326.41985 * 24 22 20
28 28 H 1.09003 * 109.47201 * 269.21116 * 1 2 3
29 29 H 1.09000 * 109.47227 * 29.20288 * 1 2 3
30 30 H 1.09001 * 109.47869 * 149.20787 * 1 2 3
31 31 H 1.07994 * 125.57315 * 359.97438 * 3 2 1
32 32 H 1.07996 * 126.45387 * 180.26472 * 6 4 3
33 33 H 0.96998 * 120.00414 * 4.31588 * 10 8 7
34 34 H 1.08996 * 109.46936 * 300.00554 * 11 10 8
35 35 H 1.09000 * 109.46480 * 60.00363 * 11 10 8
36 36 H 1.08998 * 109.47723 * 300.00588 * 12 11 10
37 37 H 1.09005 * 109.46961 * 60.00511 * 12 11 10
38 38 H 1.09006 * 109.47240 * 294.88400 * 13 12 11
39 39 H 1.09006 * 109.47093 * 54.88325 * 13 12 11
40 40 H 1.08999 * 110.72189 * 336.75767 * 16 14 13
41 41 H 1.09009 * 110.71833 * 100.02580 * 16 14 13
42 42 H 1.08997 * 111.00150 * 153.57310 * 17 16 14
43 43 H 1.08994 * 111.00739 * 277.39514 * 17 16 14
44 44 H 1.08999 * 110.36787 * 81.83166 * 18 17 16
45 45 H 1.09004 * 110.35994 * 204.14826 * 18 17 16
46 46 H 0.96995 * 119.99828 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2560 1.1017 0.0000
4 6 3.5531 0.7094 0.0006
5 17 4.9378 1.7565 0.0014
6 6 3.5781 -0.6893 0.0064
7 6 2.2676 -1.1181 0.0005
8 6 1.8118 -2.5122 0.0006
9 8 0.6246 -2.7643 0.0886
10 7 2.7085 -3.5143 -0.0913
11 6 2.2487 -4.9021 -0.1863
12 6 3.4581 -5.8347 -0.2796
13 6 2.9780 -7.2839 -0.3795
14 6 4.1794 -8.2051 -0.6008
15 1 4.7411 -7.8779 -1.4758
16 6 3.6976 -9.6576 -0.7993
17 6 4.7712 -10.4861 -0.0454
18 6 5.1029 -9.5538 1.1465
19 7 5.0477 -8.1882 0.5856
20 6 5.6953 -7.0898 1.0849
21 1 5.9009 -6.2459 0.4431
22 6 6.0877 -7.0611 2.4162
23 7 7.0270 -6.2263 2.8075
24 14 5.2826 -8.2073 3.6521
25 1 5.9906 -9.5128 3.6507
26 1 5.3574 -7.6051 5.0074
27 1 3.8600 -8.4153 3.2807
28 1 -0.3634 -0.0141 1.0276
29 1 -0.3634 0.8970 -0.5014
30 1 -0.3635 -0.8828 -0.5261
31 1 1.9089 2.1244 -0.0004
32 1 4.4581 -1.3153 0.0124
33 1 3.6581 -3.3167 -0.0944
34 1 1.6637 -5.1524 0.6986
35 1 1.6302 -5.0197 -1.0761
36 1 4.0428 -5.5841 -1.1647
37 1 4.0770 -5.7171 0.6100
38 1 2.4712 -7.5633 0.5442
39 1 2.2868 -7.3808 -1.2168
40 1 2.7143 -9.8023 -0.3519
41 1 3.6828 -9.9178 -1.8578
42 1 4.3603 -11.4338 0.3024
43 1 5.6490 -10.6492 -0.6706
44 1 4.3619 -9.6708 1.9372
45 1 6.1020 -9.7660 1.5273
46 1 7.3009 -6.2060 3.7378
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001663085883.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:29:02
Heat of formation + Delta-G solvation = 3.960185 kcal
Electronic energy + Delta-G solvation = -27027.237483 eV
Core-core repulsion = 23171.208589 eV
Total energy + Delta-G solvation = -3856.028894 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.145 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.53757 -40.28571 -39.64696 -37.38152 -36.64448 -34.57598 -34.26437 -33.43802
-31.70891 -30.96297 -29.41906 -27.44941 -26.50028 -25.79745 -23.67760 -22.99850
-21.88824 -21.65898 -20.84041 -20.55194 -19.04246 -18.71629 -17.40651 -17.20730
-16.97285 -16.90959 -16.51182 -16.14071 -15.36131 -15.24166 -14.98895 -14.95962
-14.83915 -14.56767 -14.27145 -13.96360 -13.84942 -13.79952 -13.65265 -13.40139
-13.19235 -13.03927 -12.74612 -12.60437 -12.42476 -12.39740 -12.08628 -11.88088
-11.77147 -11.62190 -11.44273 -11.38091 -11.16471 -11.01869 -10.64815 -10.21420
-9.75814 -9.29118 -8.89002 -8.09261 -5.33969 0.27923 1.11884 1.30853
1.39257 1.39878 1.46337 1.70160 2.18759 2.42273 2.46808 3.14721
3.40096 3.62000 3.85634 3.88773 3.98989 4.00211 4.15620 4.19569
4.21354 4.27278 4.36529 4.47657 4.52115 4.52959 4.68829 4.70731
4.78781 4.84045 4.85930 4.91596 4.98293 5.04532 5.17204 5.21111
5.29233 5.31192 5.41307 5.42205 5.63984 5.66725 5.68421 5.86352
6.02049 6.21237 6.42483 6.87909 7.04093 7.65374 8.25871 9.10264
Molecular weight = 339.15amu
Principal moments of inertia in cm(-1)
A = 0.012830 B = 0.002718 C = 0.002449
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2181.813961 B =10298.537912 C =11429.453449
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.066 3.934
2 N -0.406 5.406
3 C 0.053 3.947
4 C -0.143 4.143
5 Cl -0.047 7.047
6 C -0.130 4.130
7 C -0.062 4.062
8 C 0.586 3.414
9 O -0.580 6.580
10 N -0.708 5.708
11 C 0.134 3.866
12 C -0.129 4.129
13 C -0.110 4.110
14 C 0.149 3.851
15 H 0.043 0.957
16 C -0.117 4.117
17 C -0.121 4.121
18 C 0.098 3.902
19 N -0.621 5.621
20 C -0.200 4.200
21 H 0.075 0.925
22 C -0.035 4.035
23 N -0.956 5.956
24 Si 0.930 3.070
25 H -0.281 1.281
26 H -0.319 1.319
27 H -0.270 1.270
28 H 0.084 0.916
29 H 0.123 0.877
30 H 0.085 0.915
31 H 0.217 0.783
32 H 0.156 0.844
33 H 0.411 0.589
34 H 0.050 0.950
35 H 0.074 0.926
36 H 0.065 0.935
37 H 0.071 0.929
38 H 0.043 0.957
39 H 0.084 0.916
40 H 0.076 0.924
41 H 0.097 0.903
42 H 0.090 0.910
43 H 0.074 0.926
44 H 0.016 0.984
45 H 0.031 0.969
46 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.910 9.941 -10.281 19.266
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 N -0.078 5.078
3 C -0.085 4.085
4 C -0.176 4.176
5 Cl -0.019 7.019
6 C -0.157 4.157
7 C -0.176 4.176
8 C 0.374 3.626
9 O -0.463 6.463
10 N -0.358 5.358
11 C 0.011 3.989
12 C -0.167 4.167
13 C -0.150 4.150
14 C 0.043 3.957
15 H 0.061 0.939
16 C -0.155 4.155
17 C -0.159 4.159
18 C -0.027 4.027
19 N -0.347 5.347
20 C -0.329 4.329
21 H 0.093 0.907
22 C -0.229 4.229
23 N -0.604 5.604
24 Si 0.762 3.238
25 H -0.208 1.208
26 H -0.248 1.248
27 H -0.196 1.196
28 H 0.102 0.898
29 H 0.141 0.859
30 H 0.104 0.896
31 H 0.233 0.767
32 H 0.174 0.826
33 H 0.247 0.753
34 H 0.068 0.932
35 H 0.092 0.908
36 H 0.084 0.916
37 H 0.090 0.910
38 H 0.062 0.938
39 H 0.102 0.898
40 H 0.094 0.906
41 H 0.116 0.884
42 H 0.109 0.891
43 H 0.092 0.908
44 H 0.034 0.966
45 H 0.050 0.950
46 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -13.921 9.885 -10.103 19.838
hybrid contribution 0.789 -0.138 1.432 1.641
sum -13.132 9.747 -8.671 18.510
Atomic orbital electron populations
1.22484 0.73691 1.06266 1.04923 1.44027 1.08077 1.04119 1.51598
1.22295 0.88139 0.93220 1.04846 1.20044 0.88988 0.91098 1.17465
1.98328 1.40679 1.65124 1.97733 1.21462 0.95422 0.94265 1.04536
1.19876 0.90298 0.87923 1.19497 1.17107 0.85374 0.84052 0.76053
1.90744 1.17182 1.85402 1.52939 1.45762 1.10351 1.06440 1.73280
1.21376 0.97237 0.78993 1.01308 1.21907 0.96537 0.94716 1.03520
1.21811 0.98111 0.93909 1.01151 1.21306 0.90008 0.95249 0.89117
0.93920 1.22622 0.98386 0.92828 1.01662 1.22680 0.99555 0.97627
0.96077 1.22104 0.97785 0.86198 0.96584 1.45133 1.54271 1.03893
1.31357 1.18553 1.26430 0.95451 0.92495 0.90700 1.25525 0.99598
0.99222 0.98518 1.69914 1.31164 1.42618 1.16744 0.86163 0.80118
0.78911 0.78628 1.20814 1.24812 1.19554 0.89790 0.85851 0.89628
0.76669 0.82646 0.75283 0.93171 0.90765 0.91600 0.91012 0.93843
0.89800 0.90577 0.88426 0.89113 0.90775 0.96612 0.95025 0.93435
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.00 10.51 127.77 1.34 2.35 16
2 N -0.41 -8.46 3.16 -534.19 -1.69 -10.15 16
3 C 0.05 0.93 11.36 83.48 0.95 1.88 16
4 C -0.14 -3.18 6.66 22.04 0.15 -3.04 16
5 Cl -0.05 -1.00 29.30 -2.72 -0.08 -1.08 16
6 C -0.13 -3.28 10.35 22.59 0.23 -3.05 16
7 C -0.06 -1.66 6.88 40.35 0.28 -1.38 16
8 C 0.59 17.94 7.77 86.44 0.67 18.62 16
9 O -0.58 -20.10 14.75 -4.32 -0.06 -20.17 16
10 N -0.71 -20.97 5.54 -467.07 -2.59 -23.56 16
11 C 0.13 4.05 5.68 86.38 0.49 4.54 16
12 C -0.13 -4.27 4.49 30.59 0.14 -4.13 16
13 C -0.11 -3.44 4.74 30.59 0.15 -3.30 16
14 C 0.15 5.07 3.25 45.34 0.15 5.21 16
15 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16
16 C -0.12 -3.08 6.48 31.78 0.21 -2.87 16
17 C -0.12 -3.53 7.09 31.99 0.23 -3.30 16
18 C 0.10 4.00 4.75 86.80 0.41 4.42 16
19 N -0.62 -27.53 2.90 -667.44 -1.93 -29.46 16
20 C -0.20 -10.62 7.94 84.03 0.67 -9.95 16
21 H 0.08 4.19 7.09 -2.91 -0.02 4.17 16
22 C -0.03 -1.98 5.45 84.86 0.46 -1.52 16
23 N -0.96 -59.01 13.97 21.65 0.30 -58.71 16
24 Si 0.93 47.19 24.32 68.60 1.67 48.86 16
25 H -0.28 -13.77 6.72 99.48 0.67 -13.10 16
26 H -0.32 -16.73 7.11 99.48 0.71 -16.03 16
27 H -0.27 -13.25 6.55 99.48 0.65 -12.60 16
28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16
29 H 0.12 0.87 8.14 -2.39 -0.02 0.86 16
30 H 0.09 1.68 6.48 -2.39 -0.02 1.67 16
31 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16
32 H 0.16 3.78 7.45 -2.91 -0.02 3.76 16
33 H 0.41 11.43 7.37 -92.71 -0.68 10.75 16
34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16
37 H 0.07 3.03 5.21 -2.38 -0.01 3.01 16
38 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16
39 H 0.08 2.05 8.14 -2.38 -0.02 2.04 16
40 H 0.08 1.86 7.85 -2.39 -0.02 1.84 16
41 H 0.10 1.98 8.14 -2.38 -0.02 1.97 16
42 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16
43 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
44 H 0.02 0.69 5.39 -2.39 -0.01 0.68 16
45 H 0.03 1.42 7.01 -2.39 -0.02 1.41 16
46 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16
Total: -1.00 -71.15 377.49 2.35 -68.80
By element:
Atomic # 1 Polarization: 20.76 SS G_CDS: 0.22 Total: 20.98 kcal
Atomic # 6 Polarization: -2.04 SS G_CDS: 6.52 Total: 4.48 kcal
Atomic # 7 Polarization: -115.97 SS G_CDS: -5.91 Total: -121.88 kcal
Atomic # 8 Polarization: -20.10 SS G_CDS: -0.06 Total: -20.17 kcal
Atomic # 14 Polarization: 47.19 SS G_CDS: 1.67 Total: 48.86 kcal
Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal
Total: -71.15 2.35 -68.80 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001663085883.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.764 kcal
(2) G-P(sol) polarization free energy of solvation -71.152 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.612 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.804 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.960 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds