Wall clock time and date at job start Tue Mar 31 2020 22:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00430 * 2 1 4 4 H 1.48496 * 109.47043 * 270.00338 * 3 2 1 5 5 H 1.48499 * 109.46994 * 30.00260 * 3 2 1 6 6 H 1.48502 * 109.47236 * 150.00222 * 3 2 1 7 7 C 1.38955 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00080 * 359.97438 * 7 2 1 9 9 N 1.37094 * 120.00042 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00316 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99860 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00244 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46997 * 181.34054 * 12 10 9 14 14 C 1.46901 * 110.99968 * 162.31389 * 13 12 10 15 15 C 1.52998 * 109.47322 * 189.99762 * 14 13 12 16 16 N 1.46497 * 109.47118 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99721 * 179.72818 * 16 15 14 18 18 O 1.21736 * 120.00346 * 0.26595 * 17 16 15 19 19 C 1.46378 * 120.00084 * 180.27132 * 17 16 15 20 20 C 1.33973 * 119.22784 * 359.97438 * 19 17 16 21 21 O 1.35009 * 121.68448 * 180.39270 * 20 19 17 22 22 C 1.43241 * 116.76387 * 342.79201 * 21 20 19 23 23 C 1.53552 * 108.08747 * 45.49120 * 22 21 20 24 24 O 1.36209 * 119.23436 * 179.72832 * 19 17 16 25 25 C 1.46899 * 110.99622 * 286.26529 * 13 12 10 26 26 C 1.52995 * 117.50170 * 3.75375 * 25 13 12 27 27 C 1.52997 * 117.49977 * 295.12699 * 25 13 12 28 28 H 0.97005 * 119.99462 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00045 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.47505 * 61.33288 * 12 10 9 31 31 H 1.09008 * 109.46666 * 301.33457 * 12 10 9 32 32 H 1.09006 * 109.46829 * 69.99551 * 14 13 12 33 33 H 1.08996 * 109.47362 * 309.99810 * 14 13 12 34 34 H 1.08993 * 109.46853 * 59.99715 * 15 14 13 35 35 H 1.09005 * 109.46814 * 300.00199 * 15 14 13 36 36 H 0.96996 * 120.00257 * 359.97438 * 16 15 14 37 37 H 1.07996 * 119.16373 * 0.37122 * 20 19 17 38 38 H 1.09003 * 109.74196 * 165.13756 * 22 21 20 39 39 H 1.08998 * 109.74513 * 285.84464 * 22 21 20 40 40 H 1.09003 * 109.74992 * 61.47147 * 23 22 21 41 41 H 1.08996 * 109.75371 * 182.21268 * 23 22 21 42 42 H 1.09002 * 115.54736 * 149.46011 * 25 13 12 43 43 H 1.09004 * 117.49611 * 359.97438 * 26 25 13 44 44 H 1.08994 * 117.50306 * 145.01918 * 26 25 13 45 45 H 1.09000 * 117.49727 * 214.97765 * 27 25 13 46 46 H 1.09000 * 117.50125 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3797 -1.2035 0.0000 10 6 4.0536 -2.3707 -0.0011 11 8 3.4471 -3.4211 -0.0020 12 6 5.5606 -2.3708 0.0001 13 7 6.0502 -3.7554 -0.0338 14 6 7.4579 -3.8060 -0.4507 15 6 7.8597 -5.2585 -0.7150 16 7 9.2637 -5.3089 -1.1302 17 6 9.8406 -6.4937 -1.4128 18 8 9.1938 -7.5215 -1.3277 19 6 11.2452 -6.5448 -1.8219 20 6 11.9425 -5.4043 -1.9108 21 8 13.2380 -5.3930 -2.2907 22 6 13.9395 -6.6403 -2.2278 23 6 13.0409 -7.7241 -2.8406 24 8 11.8141 -7.7511 -2.0984 25 6 5.8624 -4.4121 1.2668 26 6 5.1419 -3.6209 2.3602 27 6 6.6500 -3.8605 2.4569 28 1 -0.4849 0.8401 0.0004 29 1 3.8648 -0.3635 0.0004 30 1 5.9233 -1.8791 0.9027 31 1 5.9246 -1.8352 -0.8767 32 1 8.0857 -3.3932 0.3390 33 1 7.5883 -3.2215 -1.3614 34 1 7.2318 -5.6711 -1.5046 35 1 7.7292 -5.8430 0.1958 36 1 9.7790 -4.4900 -1.1983 37 1 11.4559 -4.4700 -1.6729 38 1 14.8685 -6.5691 -2.7935 39 1 14.1584 -6.8876 -1.1891 40 1 12.8381 -7.4873 -3.8851 41 1 13.5336 -8.6939 -2.7710 42 1 5.6941 -5.4884 1.2300 43 1 4.8075 -2.6129 2.1147 44 1 4.4992 -4.1765 3.0430 45 1 6.9993 -4.5739 3.2034 46 1 7.3077 -3.0107 2.2748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663700923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:59 Heat of formation + Delta-G solvation = -63.048115 kcal Electronic energy + Delta-G solvation = -29103.480457 eV Core-core repulsion = 24803.836700 eV Total energy + Delta-G solvation = -4299.643757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54001 -39.91255 -39.38228 -37.55703 -37.36664 -35.39194 -33.91905 -33.54787 -32.48022 -31.63665 -30.13446 -28.77920 -26.53981 -25.76709 -24.10467 -23.48034 -22.15719 -21.94091 -20.25549 -19.86674 -19.18178 -18.78243 -18.67151 -18.11438 -17.08226 -16.81877 -16.25410 -15.89547 -15.84527 -15.53518 -15.29482 -14.93352 -14.73486 -14.69705 -14.56835 -13.99714 -13.91344 -13.65258 -13.48526 -13.24475 -12.77800 -12.71106 -12.39615 -12.25240 -11.92015 -11.67663 -11.53925 -11.31301 -11.17182 -11.12978 -11.06101 -10.60279 -10.51264 -10.22760 -9.97620 -9.95021 -9.52126 -9.37561 -8.67264 -8.61296 -8.15341 -8.01789 -6.28906 -3.80079 0.87751 2.17736 2.61947 2.93736 3.01577 3.06557 3.14909 3.25605 3.72954 3.76538 3.88568 4.00597 4.11175 4.26263 4.31670 4.38945 4.60407 4.63944 4.75116 4.80158 4.95503 4.96480 5.04215 5.08370 5.12383 5.23015 5.31487 5.33899 5.49373 5.63750 5.71978 5.78668 5.87638 5.90594 6.04190 6.15917 6.24490 6.26484 6.38996 6.77172 6.97831 7.13765 7.17606 7.60155 7.89490 8.16512 8.62771 8.98276 9.44599 9.86704 10.84398 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022020 B = 0.001968 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.277853 B =14222.315686 C =14678.784980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.040 3.960 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.301 4.301 8 H 0.120 0.880 9 N -0.596 5.596 10 C 0.456 3.544 11 O -0.547 6.547 12 C 0.036 3.964 13 N -0.479 5.479 14 C 0.046 3.954 15 C 0.127 3.873 16 N -0.721 5.721 17 C 0.574 3.426 18 O -0.516 6.516 19 C -0.065 4.065 20 C 0.003 3.997 21 O -0.300 6.300 22 C 0.014 3.986 23 C 0.018 3.982 24 O -0.285 6.285 25 C 0.040 3.960 26 C -0.166 4.166 27 C -0.227 4.227 28 H 0.273 0.727 29 H 0.368 0.632 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.396 0.604 37 H 0.179 0.821 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.736 -6.694 -2.120 31.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.163 4.163 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.430 4.430 8 H 0.137 0.863 9 N -0.236 5.236 10 C 0.241 3.759 11 O -0.427 6.427 12 C -0.096 4.096 13 N -0.202 5.202 14 C -0.082 4.082 15 C 0.004 3.996 16 N -0.377 5.377 17 C 0.360 3.640 18 O -0.392 6.392 19 C -0.114 4.114 20 C -0.063 4.063 21 O -0.213 6.213 22 C -0.062 4.062 23 C -0.058 4.058 24 O -0.199 6.199 25 C -0.068 4.068 26 C -0.203 4.203 27 C -0.266 4.266 28 H 0.083 0.917 29 H 0.201 0.799 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.232 0.768 37 H 0.195 0.805 38 H 0.140 0.860 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 29.382 -8.355 -2.447 30.645 hybrid contribution 1.435 2.328 0.525 2.785 sum 30.818 -6.028 -1.922 31.460 Atomic orbital electron populations 1.69623 1.05603 1.27373 1.49703 1.25027 0.95470 0.97882 0.97873 0.86688 0.79701 0.84232 0.78819 1.19681 1.20273 1.19637 1.19408 0.79170 0.96569 1.47844 0.86269 1.42208 1.07499 1.06007 1.67927 1.19492 0.87806 0.84664 0.83978 1.90591 1.69019 1.30715 1.52392 1.22047 0.96386 0.89391 1.01742 1.61435 1.15746 1.15977 1.27008 1.22259 0.89339 0.95995 1.00632 1.21317 0.79508 0.97074 1.01733 1.45715 1.13657 1.07976 1.70326 1.17048 0.84762 0.84035 0.78135 1.90891 1.64097 1.33117 1.51093 1.20414 0.93987 0.86182 1.10851 1.23121 0.84086 0.98267 1.00862 1.86108 1.21026 1.33178 1.80965 1.23750 0.95773 0.83467 1.03183 1.23716 0.84588 1.01745 0.95784 1.86481 1.37670 1.24798 1.70907 1.22654 1.03114 0.98535 0.82540 1.23252 0.93298 1.02562 1.01227 1.23476 0.95462 1.04172 1.03538 0.91688 0.79913 0.92623 0.89263 0.93948 0.90022 0.89780 0.90628 0.76841 0.80468 0.85956 0.89954 0.90249 0.85903 0.85789 0.88002 0.88385 0.88773 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.69 13.96 55.50 0.77 -24.92 16 2 C 0.04 1.09 5.50 -17.47 -0.10 0.99 16 3 Si 0.88 19.14 27.74 -169.99 -4.71 14.42 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 7 C -0.30 -8.39 10.16 -14.93 -0.15 -8.54 16 8 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 9 N -0.60 -13.80 5.09 -10.96 -0.06 -13.86 16 10 C 0.46 9.96 5.84 -10.99 -0.06 9.89 16 11 O -0.55 -14.27 14.79 5.54 0.08 -14.19 16 12 C 0.04 0.56 5.00 -4.97 -0.02 0.54 16 13 N -0.48 -7.08 4.34 -228.08 -0.99 -8.07 16 14 C 0.05 0.48 4.96 -3.82 -0.02 0.46 16 15 C 0.13 1.39 5.67 -4.04 -0.02 1.37 16 16 N -0.72 -6.44 5.49 -61.71 -0.34 -6.78 16 17 C 0.57 6.90 7.73 -12.99 -0.10 6.80 16 18 O -0.52 -8.65 16.92 -10.06 -0.17 -8.82 16 19 C -0.07 -0.65 6.61 -37.81 -0.25 -0.90 16 20 C 0.00 0.02 10.57 29.23 0.31 0.33 16 21 O -0.30 -2.06 10.47 -30.85 -0.32 -2.38 16 22 C 0.01 0.06 7.29 37.44 0.27 0.33 16 23 C 0.02 0.10 7.32 37.44 0.27 0.37 16 24 O -0.29 -3.04 10.29 -45.74 -0.47 -3.51 16 25 C 0.04 0.59 4.55 -67.72 -0.31 0.29 16 26 C -0.17 -2.59 8.48 -26.73 -0.23 -2.82 16 27 C -0.23 -2.75 9.26 -26.73 -0.25 -3.00 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.37 7.48 5.76 -40.82 -0.24 7.25 16 30 H 0.06 0.78 5.99 -51.93 -0.31 0.47 16 31 H 0.09 1.19 7.77 -51.92 -0.40 0.79 16 32 H 0.04 0.37 6.87 -51.93 -0.36 0.02 16 33 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 0.92 7.30 -51.93 -0.38 0.54 16 36 H 0.40 2.11 6.31 -40.82 -0.26 1.85 16 37 H 0.18 0.67 6.08 -52.49 -0.32 0.35 16 38 H 0.12 0.19 8.14 -51.93 -0.42 -0.24 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.12 1.85 8.03 -51.93 -0.42 1.43 16 43 H 0.10 1.79 4.92 -51.93 -0.26 1.53 16 44 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.09 0.96 7.15 -51.93 -0.37 0.59 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -37.40 375.47 -7.43 -44.83 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -6.23 Total: 11.50 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -0.66 Total: 6.12 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.61 Total: -53.63 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.88 Total: -28.90 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.40 -7.43 -44.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663700923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.215 kcal (2) G-P(sol) polarization free energy of solvation -37.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds