Wall clock time and date at job start Tue Mar 31 2020 22:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00430 * 2 1 4 4 H 1.48496 * 109.47043 * 270.00338 * 3 2 1 5 5 H 1.48499 * 109.46994 * 30.00260 * 3 2 1 6 6 H 1.48502 * 109.47236 * 150.00222 * 3 2 1 7 7 C 1.38955 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00080 * 359.97438 * 7 2 1 9 9 N 1.37094 * 120.00042 * 180.02562 * 7 2 1 10 10 C 1.34775 * 120.00316 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99860 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00244 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46997 * 181.34054 * 12 10 9 14 14 C 1.46901 * 110.99968 * 162.31389 * 13 12 10 15 15 C 1.52998 * 109.47322 * 189.99762 * 14 13 12 16 16 N 1.46497 * 109.47118 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99721 * 179.72818 * 16 15 14 18 18 O 1.21736 * 120.00346 * 0.26595 * 17 16 15 19 19 C 1.46378 * 120.00084 * 180.27132 * 17 16 15 20 20 C 1.33973 * 119.22784 * 359.97438 * 19 17 16 21 21 O 1.35009 * 121.68448 * 180.39270 * 20 19 17 22 22 C 1.43241 * 116.76387 * 342.79201 * 21 20 19 23 23 C 1.53552 * 108.08747 * 45.49120 * 22 21 20 24 24 O 1.36209 * 119.23436 * 179.72832 * 19 17 16 25 25 C 1.46899 * 110.99622 * 286.26529 * 13 12 10 26 26 C 1.52995 * 117.50170 * 3.75375 * 25 13 12 27 27 C 1.52997 * 117.49977 * 295.12699 * 25 13 12 28 28 H 0.97005 * 119.99462 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00045 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.47505 * 61.33288 * 12 10 9 31 31 H 1.09008 * 109.46666 * 301.33457 * 12 10 9 32 32 H 1.09006 * 109.46829 * 69.99551 * 14 13 12 33 33 H 1.08996 * 109.47362 * 309.99810 * 14 13 12 34 34 H 1.08993 * 109.46853 * 59.99715 * 15 14 13 35 35 H 1.09005 * 109.46814 * 300.00199 * 15 14 13 36 36 H 0.96996 * 120.00257 * 359.97438 * 16 15 14 37 37 H 1.07996 * 119.16373 * 0.37122 * 20 19 17 38 38 H 1.09003 * 109.74196 * 165.13756 * 22 21 20 39 39 H 1.08998 * 109.74513 * 285.84464 * 22 21 20 40 40 H 1.09003 * 109.74992 * 61.47147 * 23 22 21 41 41 H 1.08996 * 109.75371 * 182.21268 * 23 22 21 42 42 H 1.09002 * 115.54736 * 149.46011 * 25 13 12 43 43 H 1.09004 * 117.49611 * 359.97438 * 26 25 13 44 44 H 1.08994 * 117.50306 * 145.01918 * 26 25 13 45 45 H 1.09000 * 117.49727 * 214.97765 * 27 25 13 46 46 H 1.09000 * 117.50125 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3797 -1.2035 0.0000 10 6 4.0536 -2.3707 -0.0011 11 8 3.4471 -3.4211 -0.0020 12 6 5.5606 -2.3708 0.0001 13 7 6.0502 -3.7554 -0.0338 14 6 7.4579 -3.8060 -0.4507 15 6 7.8597 -5.2585 -0.7150 16 7 9.2637 -5.3089 -1.1302 17 6 9.8406 -6.4937 -1.4128 18 8 9.1938 -7.5215 -1.3277 19 6 11.2452 -6.5448 -1.8219 20 6 11.9425 -5.4043 -1.9108 21 8 13.2380 -5.3930 -2.2907 22 6 13.9395 -6.6403 -2.2278 23 6 13.0409 -7.7241 -2.8406 24 8 11.8141 -7.7511 -2.0984 25 6 5.8624 -4.4121 1.2668 26 6 5.1419 -3.6209 2.3602 27 6 6.6500 -3.8605 2.4569 28 1 -0.4849 0.8401 0.0004 29 1 3.8648 -0.3635 0.0004 30 1 5.9233 -1.8791 0.9027 31 1 5.9246 -1.8352 -0.8767 32 1 8.0857 -3.3932 0.3390 33 1 7.5883 -3.2215 -1.3614 34 1 7.2318 -5.6711 -1.5046 35 1 7.7292 -5.8430 0.1958 36 1 9.7790 -4.4900 -1.1983 37 1 11.4559 -4.4700 -1.6729 38 1 14.8685 -6.5691 -2.7935 39 1 14.1584 -6.8876 -1.1891 40 1 12.8381 -7.4873 -3.8851 41 1 13.5336 -8.6939 -2.7710 42 1 5.6941 -5.4884 1.2300 43 1 4.8075 -2.6129 2.1147 44 1 4.4992 -4.1765 3.0430 45 1 6.9993 -4.5739 3.2034 46 1 7.3077 -3.0107 2.2748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663700923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:58 Heat of formation + Delta-G solvation = -94.964789 kcal Electronic energy + Delta-G solvation = -29104.864468 eV Core-core repulsion = 24803.836700 eV Total energy + Delta-G solvation = -4301.027768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11521 -41.09936 -40.39075 -39.04704 -38.01352 -36.34960 -35.87657 -34.54891 -33.69081 -33.13279 -30.96705 -29.62865 -27.82129 -26.35954 -25.79233 -24.37002 -23.08143 -22.86972 -21.53952 -20.95483 -20.51553 -19.84698 -19.39319 -19.30240 -18.12683 -17.66963 -17.36581 -17.09703 -16.81086 -16.57684 -16.33561 -15.84609 -15.68595 -15.46062 -15.38863 -15.23077 -15.06657 -14.91814 -14.68225 -14.39610 -14.28299 -13.89086 -13.57427 -13.20690 -13.16444 -13.03470 -12.72062 -12.37840 -12.26800 -12.11776 -11.99446 -11.95163 -11.70888 -11.58940 -11.45526 -11.10186 -11.02049 -10.34803 -10.27161 -10.17884 -9.26225 -9.16432 -8.36591 -5.96644 0.23196 1.31369 1.38311 1.46234 1.49847 2.04582 2.06770 2.23604 2.26406 2.50186 2.86932 2.90389 3.17701 3.26562 3.39462 3.70567 3.73669 3.94944 3.97280 3.98134 3.99760 4.04542 4.15844 4.22856 4.26931 4.38234 4.45519 4.46261 4.55990 4.63868 4.74338 4.82770 4.91493 4.98313 4.99726 5.17125 5.17784 5.26394 5.57319 5.76435 5.90074 6.03295 6.12740 6.18842 6.53274 6.65610 6.95586 7.11343 7.46887 8.06794 8.81445 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022020 B = 0.001968 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.277853 B =14222.315686 C =14678.784980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.020 4.020 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.229 1.229 7 C -0.321 4.321 8 H 0.052 0.948 9 N -0.597 5.597 10 C 0.456 3.544 11 O -0.599 6.599 12 C 0.050 3.950 13 N -0.507 5.507 14 C 0.054 3.946 15 C 0.134 3.866 16 N -0.699 5.699 17 C 0.571 3.429 18 O -0.580 6.580 19 C -0.105 4.105 20 C 0.044 3.956 21 O -0.305 6.305 22 C 0.012 3.988 23 C 0.010 3.990 24 O -0.325 6.325 25 C 0.027 3.973 26 C -0.198 4.198 27 C -0.180 4.180 28 H 0.277 0.723 29 H 0.388 0.612 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.418 0.582 37 H 0.212 0.788 38 H 0.156 0.844 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.192 -3.331 -2.228 36.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.218 4.218 3 Si 0.786 3.214 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.152 1.152 7 C -0.450 4.450 8 H 0.070 0.930 9 N -0.240 5.240 10 C 0.244 3.756 11 O -0.482 6.482 12 C -0.081 4.081 13 N -0.230 5.230 14 C -0.073 4.073 15 C 0.010 3.990 16 N -0.355 5.355 17 C 0.359 3.641 18 O -0.461 6.461 19 C -0.154 4.154 20 C -0.023 4.023 21 O -0.217 6.217 22 C -0.062 4.062 23 C -0.065 4.065 24 O -0.240 6.240 25 C -0.082 4.082 26 C -0.235 4.235 27 C -0.219 4.219 28 H 0.086 0.914 29 H 0.223 0.777 30 H 0.103 0.897 31 H 0.145 0.855 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.257 0.743 37 H 0.229 0.771 38 H 0.173 0.827 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.161 0.839 42 H 0.126 0.874 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.128 0.872 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 34.917 -4.956 -2.560 35.359 hybrid contribution -0.230 1.117 0.518 1.252 sum 34.686 -3.839 -2.042 34.958 Atomic orbital electron populations 1.69822 1.08213 1.29038 1.50981 1.26129 0.96462 1.02770 0.96426 0.85357 0.79515 0.76692 0.79879 1.18183 1.20401 1.15187 1.18948 0.81592 0.94680 1.49792 0.92969 1.42020 1.05645 1.07542 1.68817 1.20814 0.90777 0.83283 0.80760 1.90574 1.71106 1.32688 1.53785 1.21927 0.90749 0.90652 1.04806 1.61240 1.18950 1.15567 1.27255 1.22293 0.87031 0.95369 1.02635 1.21080 0.80186 0.97714 1.00066 1.45423 1.12849 1.08163 1.69047 1.17519 0.85612 0.83780 0.77139 1.90852 1.65695 1.35335 1.54245 1.20179 0.93361 0.87161 1.14657 1.23608 0.83918 0.98270 0.96512 1.86115 1.20776 1.34605 1.80216 1.24028 0.96233 0.81907 1.04062 1.24016 0.83411 1.03579 0.95479 1.86405 1.39684 1.25845 1.72049 1.22586 1.04339 0.97813 0.83458 1.23172 0.96206 1.01531 1.02615 1.23520 0.92795 1.04302 1.01313 0.91363 0.77657 0.89714 0.85517 0.90758 0.87553 0.92702 0.92146 0.74304 0.77139 0.82685 0.89433 0.90140 0.83868 0.87402 0.89894 0.89936 0.87156 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.06 13.96 21.66 0.30 -56.76 16 2 C -0.02 -1.11 5.50 84.93 0.47 -0.65 16 3 Si 0.97 38.36 27.74 68.60 1.90 40.27 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 5 H -0.28 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.23 -7.47 6.52 99.48 0.65 -6.82 16 7 C -0.32 -18.70 10.16 84.04 0.85 -17.85 16 8 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 9 N -0.60 -27.49 5.09 -306.98 -1.56 -29.05 16 10 C 0.46 19.94 5.84 87.66 0.51 20.45 16 11 O -0.60 -32.84 14.79 -3.08 -0.05 -32.88 16 12 C 0.05 1.39 5.00 85.56 0.43 1.82 16 13 N -0.51 -13.93 4.34 -875.52 -3.80 -17.73 16 14 C 0.05 0.90 4.96 86.30 0.43 1.33 16 15 C 0.13 2.78 5.67 86.38 0.49 3.27 16 16 N -0.70 -10.99 5.49 -467.36 -2.56 -13.55 16 17 C 0.57 13.60 7.73 86.36 0.67 14.27 16 18 O -0.58 -20.56 16.92 10.09 0.17 -20.39 16 19 C -0.11 -1.97 6.61 23.42 0.15 -1.81 16 20 C 0.04 0.46 10.57 66.85 0.71 1.17 16 21 O -0.31 -3.04 10.47 -69.32 -0.73 -3.77 16 22 C 0.01 0.07 7.29 72.17 0.53 0.60 16 23 C 0.01 0.10 7.32 72.17 0.53 0.63 16 24 O -0.32 -6.91 10.29 -71.71 -0.74 -7.64 16 25 C 0.03 0.77 4.55 44.91 0.20 0.98 16 26 C -0.20 -6.14 8.48 30.59 0.26 -5.88 16 27 C -0.18 -3.79 9.26 30.59 0.28 -3.50 16 28 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 29 H 0.39 14.59 5.76 -92.70 -0.53 14.06 16 30 H 0.09 1.96 5.99 -2.39 -0.01 1.94 16 31 H 0.13 2.67 7.77 -2.38 -0.02 2.65 16 32 H 0.07 0.84 6.87 -2.38 -0.02 0.82 16 33 H 0.11 1.31 7.84 -2.39 -0.02 1.30 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.46 7.30 -2.38 -0.02 1.44 16 36 H 0.42 2.65 6.31 -92.71 -0.59 2.07 16 37 H 0.21 0.51 6.08 -2.91 -0.02 0.49 16 38 H 0.16 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.11 3.36 8.03 -2.39 -0.02 3.34 16 43 H 0.08 2.87 4.92 -2.38 -0.01 2.86 16 44 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.11 1.83 7.15 -2.39 -0.02 1.81 16 Total: -1.00 -93.40 375.47 -0.69 -94.09 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.14 Total: 32.60 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 6.51 Total: 14.81 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -7.63 Total: -117.09 kcal Atomic # 8 Polarization: -63.34 SS G_CDS: -1.34 Total: -64.68 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.90 Total: 40.27 kcal Total: -93.40 -0.69 -94.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663700923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.872 kcal (2) G-P(sol) polarization free energy of solvation -93.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds