Wall clock time and date at job start Tue Mar 31 2020 22:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40447 * 126.82744 * 2 1 4 4 C 1.30709 * 106.79324 * 180.25905 * 3 2 1 5 5 N 1.33244 * 108.94858 * 359.75787 * 4 3 2 6 6 C 1.30838 * 109.82839 * 359.97438 * 5 4 3 7 7 C 1.50692 * 125.96208 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.46955 * 96.52616 * 7 6 5 9 9 C 1.46906 * 110.99733 * 163.44885 * 8 7 6 10 10 C 1.52998 * 109.46906 * 190.00234 * 9 8 7 11 11 N 1.46500 * 109.47027 * 180.02562 * 10 9 8 12 12 C 1.34782 * 119.99866 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00028 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.99715 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.46957 * 179.97438 * 14 12 11 16 16 C 1.76201 * 100.00165 * 179.97438 * 15 14 12 17 17 H 1.08007 * 120.00025 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00320 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99732 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00002 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47241 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46796 * 120.00654 * 20 18 16 23 23 H 1.48501 * 109.47107 * 240.00254 * 20 18 16 24 24 C 1.46893 * 111.00310 * 287.40723 * 8 7 6 25 25 C 1.53002 * 117.49929 * 138.94368 * 24 8 7 26 26 C 1.53000 * 117.50129 * 70.28258 * 24 8 7 27 27 H 1.08996 * 109.46825 * 270.17220 * 1 2 3 28 28 H 1.08998 * 109.46902 * 30.16956 * 1 2 3 29 29 H 1.08999 * 109.46983 * 150.16612 * 1 2 3 30 30 H 1.08000 * 125.52675 * 179.71423 * 4 3 2 31 31 H 1.09005 * 109.47126 * 336.53323 * 7 6 5 32 32 H 1.08994 * 109.47416 * 216.52679 * 7 6 5 33 33 H 1.08996 * 109.46791 * 70.00322 * 9 8 7 34 34 H 1.08999 * 109.47570 * 310.00395 * 9 8 7 35 35 H 1.09006 * 109.47240 * 60.00494 * 10 9 8 36 36 H 1.09000 * 109.47617 * 300.00200 * 10 9 8 37 37 H 0.96993 * 120.00088 * 359.97438 * 11 10 9 38 38 H 1.09005 * 109.47048 * 299.99293 * 14 12 11 39 39 H 1.08996 * 109.47520 * 59.99948 * 14 12 11 40 40 H 0.97005 * 119.99737 * 179.97438 * 19 18 16 41 41 H 1.09005 * 115.54942 * 284.60969 * 24 8 7 42 42 H 1.09000 * 117.49911 * 359.97438 * 25 24 8 43 43 H 1.08997 * 117.50272 * 145.02302 * 25 24 8 44 44 H 1.09008 * 117.49632 * 214.97961 * 26 24 8 45 45 H 1.09003 * 117.49751 * 359.97139 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3069 1.1242 0.0000 4 6 3.5349 0.6764 -0.0057 5 7 3.5096 -0.6558 -0.0039 6 6 2.2707 -1.0762 0.0035 7 6 1.8246 -2.5156 0.0083 8 7 1.5367 -2.9344 1.3867 9 6 0.7408 -4.1690 1.4063 10 6 0.2512 -4.4374 2.8307 11 7 -0.5420 -5.6690 2.8505 12 6 -1.0801 -6.1055 4.0066 13 8 -0.9081 -5.4785 5.0304 14 6 -1.8955 -7.3726 4.0270 15 16 -2.4749 -7.6901 5.7121 16 6 -3.3730 -9.1834 5.4506 17 1 -3.4279 -9.6145 4.4618 18 6 -4.0090 -9.8063 6.5155 19 7 -3.9416 -9.2812 7.7206 20 14 -4.9604 -11.3898 6.2384 21 1 -4.8830 -11.7694 4.8048 22 1 -4.3733 -12.4718 7.0690 23 1 -6.3809 -11.1872 6.6212 24 6 2.7765 -3.0948 2.1580 25 6 2.7811 -2.5871 3.6014 26 6 3.5526 -1.8268 2.5197 27 1 -0.3633 0.0031 1.0276 28 1 -0.3633 0.8885 -0.5165 29 1 -0.3633 -0.8915 -0.5112 30 1 4.4256 1.2872 -0.0116 31 1 2.6153 -3.1424 -0.4041 32 1 0.9250 -2.6192 -0.5983 33 1 1.3565 -5.0034 1.0704 34 1 -0.1164 -4.0594 0.7420 35 1 -0.3645 -3.6029 3.1666 36 1 1.1083 -4.5470 3.4951 37 1 -0.6805 -6.1698 2.0315 38 1 -2.7525 -7.2640 3.3622 39 1 -1.2791 -8.2068 3.6919 40 1 -4.3865 -9.7164 8.4648 41 1 3.3539 -3.9929 1.9385 42 1 1.8644 -2.1338 3.9784 43 1 3.3620 -3.1509 4.3313 44 1 4.6406 -1.8908 2.5385 45 1 3.1434 -0.8736 2.1848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663705769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:52 Heat of formation + Delta-G solvation = 98.481685 kcal Electronic energy + Delta-G solvation = -26302.898658 eV Core-core repulsion = 22485.304981 eV Total energy + Delta-G solvation = -3817.593677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.50483 -39.46697 -38.67070 -35.36390 -34.61101 -33.99029 -32.44423 -32.11485 -30.17834 -28.46875 -27.49641 -25.80563 -25.43284 -23.07047 -22.57292 -22.20838 -21.14315 -20.59353 -20.21349 -17.90748 -17.44647 -16.64416 -16.37889 -16.14698 -16.06416 -15.84187 -15.15373 -15.05406 -14.83027 -14.77530 -14.46882 -13.91754 -13.81264 -13.78489 -13.47311 -13.16336 -13.04860 -12.62672 -12.47856 -12.28477 -12.03228 -11.83444 -11.59880 -11.54875 -11.08442 -11.03376 -10.77537 -10.67537 -10.39168 -10.30450 -9.97655 -9.84195 -9.81906 -9.43436 -9.09294 -8.97811 -8.89944 -8.24453 -6.51430 -6.23220 -3.93739 1.21411 1.96129 2.51022 2.93410 3.08871 3.20288 3.21492 3.28903 3.39473 3.55886 3.74128 3.84261 4.12106 4.18842 4.29246 4.53756 4.60599 4.70545 4.73897 4.77630 4.80014 4.92333 5.04147 5.06222 5.08312 5.12085 5.14564 5.21025 5.40452 5.58103 5.60878 5.73744 5.83798 5.88203 5.90803 5.92499 6.04275 6.10537 6.11667 6.29414 6.43717 6.52200 6.65197 7.58339 7.66985 7.77418 8.33876 8.59757 9.22253 10.84243 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.001799 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.403439 B =15563.028178 C =15851.143105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.367 5.367 3 N -0.323 5.323 4 C 0.195 3.805 5 N -0.533 5.533 6 C 0.291 3.709 7 C 0.134 3.866 8 N -0.507 5.507 9 C 0.051 3.949 10 C 0.126 3.874 11 N -0.740 5.740 12 C 0.533 3.467 13 O -0.515 6.515 14 C -0.153 4.153 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.001 4.001 25 C -0.165 4.165 26 C -0.147 4.147 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.216 0.784 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.952 16.210 -20.294 29.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.158 5.158 3 N -0.151 5.151 4 C -0.107 4.107 5 N -0.262 5.262 6 C 0.014 3.986 7 C 0.004 3.996 8 N -0.232 5.232 9 C -0.077 4.077 10 C 0.002 3.998 11 N -0.396 5.396 12 C 0.319 3.681 13 O -0.389 6.389 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.110 4.110 25 C -0.202 4.202 26 C -0.184 4.184 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.232 0.768 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.230 0.770 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.905 18.190 -18.175 28.771 hybrid contribution -0.584 -2.625 -2.132 3.432 sum 12.322 15.566 -20.307 28.399 Atomic orbital electron populations 1.21961 0.73550 1.04467 1.04446 1.50202 1.08096 1.03830 1.53637 1.78079 1.02189 1.08243 1.26591 1.25932 0.95757 0.90484 0.98572 1.70542 1.19452 1.11336 1.24839 1.23944 0.86171 0.92151 0.96370 1.20413 1.01704 0.86616 0.90864 1.61497 1.18301 1.32668 1.10783 1.22249 0.97296 0.90131 0.97975 1.21142 0.95874 0.87264 0.95532 1.45916 1.55377 1.27031 1.11235 1.20278 0.78936 0.86179 0.82753 1.90712 1.58534 1.57257 1.32367 1.23526 1.01643 0.96823 1.08377 1.85422 1.65687 1.31921 1.00365 1.22909 1.37617 1.10147 0.97677 0.90874 1.24999 0.96058 0.98134 0.94447 1.70028 1.41600 1.39012 0.99598 0.86115 0.79273 0.81692 0.78392 1.19629 1.20569 1.20565 1.22419 0.92483 0.98509 0.97554 1.23139 1.02849 1.03483 0.90768 1.23004 0.98364 0.95352 1.01689 0.89626 0.89159 0.89101 0.76811 0.90260 0.88400 0.93363 0.89778 0.90982 0.91075 0.77008 0.89229 0.89249 0.92226 0.88974 0.88211 0.88470 0.88659 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.33 59.85 0.68 1.18 16 2 N -0.37 -3.13 4.04 -65.10 -0.26 -3.39 16 3 N -0.32 -3.27 12.70 29.29 0.37 -2.90 16 4 C 0.20 1.74 12.76 -91.81 -1.17 0.57 16 5 N -0.53 -5.14 9.14 -11.97 -0.11 -5.24 16 6 C 0.29 2.46 5.56 -155.69 -0.87 1.60 16 7 C 0.13 0.83 5.24 -4.98 -0.03 0.80 16 8 N -0.51 -3.74 4.59 -228.09 -1.05 -4.79 16 9 C 0.05 0.35 5.06 -3.82 -0.02 0.33 16 10 C 0.13 1.36 5.48 -4.04 -0.02 1.34 16 11 N -0.74 -9.02 5.56 -60.29 -0.33 -9.36 16 12 C 0.53 9.58 7.85 -10.99 -0.09 9.49 16 13 O -0.51 -11.51 15.86 5.56 0.09 -11.42 16 14 C -0.15 -2.99 6.16 36.00 0.22 -2.77 16 15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 16 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 17 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 18 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 20 Si 0.92 21.20 29.55 -169.99 -5.02 16.17 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 C 0.00 -0.01 4.22 -67.72 -0.29 -0.30 16 25 C -0.16 -1.58 9.22 -26.69 -0.25 -1.83 16 26 C -0.15 -1.36 8.52 -26.69 -0.23 -1.59 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.26 7.24 -51.93 -0.38 -0.12 16 30 H 0.22 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.08 0.48 8.04 -51.93 -0.42 0.06 16 32 H 0.10 0.37 6.98 -51.93 -0.36 0.01 16 33 H 0.05 0.30 8.12 -51.93 -0.42 -0.12 16 34 H 0.08 0.42 7.86 -51.93 -0.41 0.02 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 37 H 0.40 3.51 8.47 -40.82 -0.35 3.16 16 38 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 39 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 45 H 0.09 1.01 5.61 -51.93 -0.29 0.72 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -36.81 389.27 -10.52 -47.33 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.74 Total: 0.81 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -1.85 Total: -3.98 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.65 Total: -50.94 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.81 -10.52 -47.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.813 kcal (2) G-P(sol) polarization free energy of solvation -36.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds