Wall clock time and date at job start Tue Mar 31 2020 22:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40447 * 126.82744 * 2 1 4 4 C 1.30709 * 106.79324 * 180.25905 * 3 2 1 5 5 N 1.33244 * 108.94858 * 359.75787 * 4 3 2 6 6 C 1.30838 * 109.82839 * 359.97438 * 5 4 3 7 7 C 1.50692 * 125.96208 * 180.02562 * 6 5 4 8 8 N 1.46905 * 109.46955 * 96.52616 * 7 6 5 9 9 C 1.46906 * 110.99733 * 163.44885 * 8 7 6 10 10 C 1.52998 * 109.46906 * 190.00234 * 9 8 7 11 11 N 1.46500 * 109.47027 * 180.02562 * 10 9 8 12 12 C 1.34782 * 119.99866 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00028 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.99715 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.46957 * 179.97438 * 14 12 11 16 16 C 1.76201 * 100.00165 * 179.97438 * 15 14 12 17 17 H 1.08007 * 120.00025 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00320 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99732 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00002 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47241 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46796 * 120.00654 * 20 18 16 23 23 H 1.48501 * 109.47107 * 240.00254 * 20 18 16 24 24 C 1.46893 * 111.00310 * 287.40723 * 8 7 6 25 25 C 1.53002 * 117.49929 * 138.94368 * 24 8 7 26 26 C 1.53000 * 117.50129 * 70.28258 * 24 8 7 27 27 H 1.08996 * 109.46825 * 270.17220 * 1 2 3 28 28 H 1.08998 * 109.46902 * 30.16956 * 1 2 3 29 29 H 1.08999 * 109.46983 * 150.16612 * 1 2 3 30 30 H 1.08000 * 125.52675 * 179.71423 * 4 3 2 31 31 H 1.09005 * 109.47126 * 336.53323 * 7 6 5 32 32 H 1.08994 * 109.47416 * 216.52679 * 7 6 5 33 33 H 1.08996 * 109.46791 * 70.00322 * 9 8 7 34 34 H 1.08999 * 109.47570 * 310.00395 * 9 8 7 35 35 H 1.09006 * 109.47240 * 60.00494 * 10 9 8 36 36 H 1.09000 * 109.47617 * 300.00200 * 10 9 8 37 37 H 0.96993 * 120.00088 * 359.97438 * 11 10 9 38 38 H 1.09005 * 109.47048 * 299.99293 * 14 12 11 39 39 H 1.08996 * 109.47520 * 59.99948 * 14 12 11 40 40 H 0.97005 * 119.99737 * 179.97438 * 19 18 16 41 41 H 1.09005 * 115.54942 * 284.60969 * 24 8 7 42 42 H 1.09000 * 117.49911 * 359.97438 * 25 24 8 43 43 H 1.08997 * 117.50272 * 145.02302 * 25 24 8 44 44 H 1.09008 * 117.49632 * 214.97961 * 26 24 8 45 45 H 1.09003 * 117.49751 * 359.97139 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3069 1.1242 0.0000 4 6 3.5349 0.6764 -0.0057 5 7 3.5096 -0.6558 -0.0039 6 6 2.2707 -1.0762 0.0035 7 6 1.8246 -2.5156 0.0083 8 7 1.5367 -2.9344 1.3867 9 6 0.7408 -4.1690 1.4063 10 6 0.2512 -4.4374 2.8307 11 7 -0.5420 -5.6690 2.8505 12 6 -1.0801 -6.1055 4.0066 13 8 -0.9081 -5.4785 5.0304 14 6 -1.8955 -7.3726 4.0270 15 16 -2.4749 -7.6901 5.7121 16 6 -3.3730 -9.1834 5.4506 17 1 -3.4279 -9.6145 4.4618 18 6 -4.0090 -9.8063 6.5155 19 7 -3.9416 -9.2812 7.7206 20 14 -4.9604 -11.3898 6.2384 21 1 -4.8830 -11.7694 4.8048 22 1 -4.3733 -12.4718 7.0690 23 1 -6.3809 -11.1872 6.6212 24 6 2.7765 -3.0948 2.1580 25 6 2.7811 -2.5871 3.6014 26 6 3.5526 -1.8268 2.5197 27 1 -0.3633 0.0031 1.0276 28 1 -0.3633 0.8885 -0.5165 29 1 -0.3633 -0.8915 -0.5112 30 1 4.4256 1.2872 -0.0116 31 1 2.6153 -3.1424 -0.4041 32 1 0.9250 -2.6192 -0.5983 33 1 1.3565 -5.0034 1.0704 34 1 -0.1164 -4.0594 0.7420 35 1 -0.3645 -3.6029 3.1666 36 1 1.1083 -4.5470 3.4951 37 1 -0.6805 -6.1698 2.0315 38 1 -2.7525 -7.2640 3.3622 39 1 -1.2791 -8.2068 3.6919 40 1 -4.3865 -9.7164 8.4648 41 1 3.3539 -3.9929 1.9385 42 1 1.8644 -2.1338 3.9784 43 1 3.3620 -3.1509 4.3313 44 1 4.6406 -1.8908 2.5385 45 1 3.1434 -0.8736 2.1848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663705769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:51 Heat of formation + Delta-G solvation = 71.955215 kcal Electronic energy + Delta-G solvation = -26304.048932 eV Core-core repulsion = 22485.304981 eV Total energy + Delta-G solvation = -3818.743951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.10691 -40.64739 -39.54583 -36.28787 -35.39150 -34.67014 -34.56765 -32.87363 -31.39029 -29.40675 -28.10143 -27.63175 -26.39382 -23.83660 -23.31284 -22.86145 -21.86378 -21.72436 -20.97814 -19.81788 -18.12583 -17.77224 -17.29285 -17.00562 -16.91404 -16.86745 -16.70191 -16.24680 -15.97181 -15.61512 -15.24265 -15.14054 -14.86099 -14.64346 -14.33122 -14.28607 -13.93935 -13.65766 -13.55283 -13.14212 -13.09979 -12.90730 -12.72713 -12.60683 -12.51058 -12.41826 -12.36326 -11.69368 -11.38869 -11.14642 -11.11572 -10.97191 -10.93387 -10.54940 -10.50067 -10.24107 -10.06574 -9.54210 -8.64760 -8.33379 -6.11060 0.60736 1.28728 1.42599 1.45581 1.49291 1.59370 1.65916 1.88894 2.24344 2.29662 2.81604 2.87159 3.01018 3.23581 3.35632 3.65034 3.79913 3.86210 4.01428 4.02118 4.09295 4.10916 4.20163 4.31936 4.34982 4.41575 4.52263 4.53630 4.54994 4.61355 4.70209 4.75410 4.80753 4.96543 5.00441 5.08526 5.25233 5.34280 5.43399 5.44214 5.50806 5.77272 5.89221 5.98432 6.21611 6.55961 7.08251 7.15620 7.30337 8.76018 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.001799 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.403439 B =15563.028178 C =15851.143105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.371 5.371 3 N -0.355 5.355 4 C 0.189 3.811 5 N -0.554 5.554 6 C 0.286 3.714 7 C 0.137 3.863 8 N -0.514 5.514 9 C 0.062 3.938 10 C 0.128 3.872 11 N -0.709 5.709 12 C 0.534 3.466 13 O -0.567 6.567 14 C -0.128 4.128 15 S -0.157 6.157 16 C -0.544 4.544 17 H 0.085 0.915 18 C 0.011 3.989 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.255 1.255 22 H -0.275 1.275 23 H -0.275 1.275 24 C 0.011 3.989 25 C -0.176 4.176 26 C -0.141 4.141 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.237 0.763 31 H 0.087 0.913 32 H 0.131 0.869 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.419 0.581 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.270 0.730 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.562 14.695 -23.628 30.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.162 5.162 3 N -0.184 5.184 4 C -0.113 4.113 5 N -0.283 5.283 6 C 0.009 3.991 7 C 0.007 3.993 8 N -0.240 5.240 9 C -0.066 4.066 10 C 0.004 3.996 11 N -0.364 5.364 12 C 0.319 3.681 13 O -0.446 6.446 14 C -0.279 4.279 15 S 0.071 5.929 16 C -0.691 4.691 17 H 0.103 0.897 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.821 3.179 21 H -0.178 1.178 22 H -0.201 1.201 23 H -0.200 1.200 24 C -0.098 4.098 25 C -0.214 4.214 26 C -0.179 4.179 27 H 0.099 0.901 28 H 0.114 0.886 29 H 0.138 0.862 30 H 0.253 0.747 31 H 0.105 0.895 32 H 0.149 0.851 33 H 0.085 0.915 34 H 0.133 0.867 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.256 0.744 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.520 16.680 -21.586 30.015 hybrid contribution -0.399 -2.046 -1.160 2.386 sum 12.121 14.633 -22.746 29.638 Atomic orbital electron populations 1.22224 0.71944 1.06222 1.04651 1.50407 1.09055 1.03442 1.53283 1.78009 1.02927 1.09695 1.27766 1.26438 0.96285 0.90739 0.97878 1.70534 1.20453 1.11670 1.25626 1.24399 0.86011 0.93060 0.95624 1.20584 1.03493 0.85088 0.90123 1.61383 1.17724 1.33171 1.11738 1.22189 0.98521 0.90485 0.95357 1.21181 0.94566 0.85627 0.98229 1.45566 1.53467 1.27140 1.10258 1.20049 0.78979 0.85494 0.83563 1.90706 1.60649 1.58591 1.34620 1.23363 1.02917 0.98526 1.03120 1.85637 1.66707 1.32760 1.07837 1.23245 1.37487 1.10109 0.98298 0.89737 1.26141 0.97075 1.02106 0.93997 1.70196 1.42896 1.41011 1.00770 0.84900 0.77413 0.76494 0.79102 1.17846 1.20092 1.20037 1.22464 0.92827 0.98110 0.96381 1.23052 1.02336 1.04294 0.91697 1.22855 0.98413 0.95075 1.01572 0.90119 0.88647 0.86219 0.74690 0.89525 0.85132 0.91513 0.86692 0.92701 0.92869 0.74407 0.86937 0.87093 0.92064 0.88126 0.90009 0.88544 0.88383 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.33 127.77 1.45 2.22 16 2 N -0.37 -5.88 4.04 -359.87 -1.45 -7.33 16 3 N -0.35 -7.10 12.70 -61.25 -0.78 -7.88 16 4 C 0.19 3.31 12.76 180.77 2.31 5.62 16 5 N -0.55 -10.15 9.14 -191.78 -1.75 -11.90 16 6 C 0.29 4.35 5.56 138.22 0.77 5.12 16 7 C 0.14 1.23 5.24 85.55 0.45 1.68 16 8 N -0.51 -6.22 4.59 -875.53 -4.02 -10.24 16 9 C 0.06 0.60 5.06 86.30 0.44 1.03 16 10 C 0.13 2.50 5.48 86.38 0.47 2.98 16 11 N -0.71 -15.34 5.56 -463.06 -2.57 -17.91 16 12 C 0.53 18.60 7.85 87.65 0.69 19.29 16 13 O -0.57 -25.85 15.86 -3.03 -0.05 -25.89 16 14 C -0.13 -4.80 6.16 71.23 0.44 -4.36 16 15 S -0.16 -8.56 20.57 -56.49 -1.16 -9.72 16 16 C -0.54 -30.51 9.50 67.95 0.65 -29.86 16 17 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 18 C 0.01 0.64 5.49 84.86 0.47 1.11 16 19 N -0.91 -55.74 13.22 21.65 0.29 -55.46 16 20 Si 1.00 42.99 29.55 68.60 2.03 45.02 16 21 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 C 0.01 0.17 4.22 44.92 0.19 0.36 16 25 C -0.18 -3.44 9.22 30.62 0.28 -3.16 16 26 C -0.14 -2.59 8.52 30.62 0.26 -2.33 16 27 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.12 0.27 7.24 -2.39 -0.02 0.25 16 30 H 0.24 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.09 0.72 8.04 -2.38 -0.02 0.70 16 32 H 0.13 0.32 6.98 -2.39 -0.02 0.30 16 33 H 0.07 0.48 8.12 -2.39 -0.02 0.46 16 34 H 0.11 0.50 7.86 -2.39 -0.02 0.48 16 35 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.05 1.28 6.55 -2.39 -0.02 1.26 16 37 H 0.42 5.54 8.47 -92.71 -0.79 4.75 16 38 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 39 H 0.11 3.69 8.14 -2.40 -0.02 3.68 16 40 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 41 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.08 1.68 5.61 -2.39 -0.01 1.67 16 Total: -1.00 -84.18 389.27 -0.40 -84.58 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.22 Total: 17.05 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 8.85 Total: -0.31 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -10.29 Total: -110.71 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.05 Total: -25.89 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -84.18 -0.40 -84.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.535 kcal (2) G-P(sol) polarization free energy of solvation -84.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds