Wall clock time and date at job start Tue Mar 31 2020 23:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00184 * 2 1 4 4 H 1.48500 * 109.47318 * 273.52193 * 3 2 1 5 5 H 1.48498 * 109.47073 * 33.52457 * 3 2 1 6 6 H 1.48507 * 109.47085 * 153.52093 * 3 2 1 7 7 C 1.38813 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00339 * 4.38881 * 7 2 1 9 9 N 1.36944 * 120.00039 * 184.39360 * 7 2 1 10 10 C 1.46496 * 120.00234 * 184.95521 * 9 7 2 11 11 C 1.53002 * 109.47288 * 185.05326 * 10 9 7 12 12 N 1.46496 * 109.54362 * 305.42657 * 11 10 9 13 13 C 1.34777 * 119.99654 * 298.88228 * 12 11 10 14 14 O 1.21280 * 120.00288 * 4.83423 * 13 12 11 15 15 C 1.50703 * 120.00190 * 184.83050 * 13 12 11 16 16 N 1.46501 * 109.47345 * 185.23514 * 15 13 12 17 17 C 1.33874 * 122.76216 * 265.48390 * 16 15 13 18 18 O 1.21220 * 125.40067 * 0.04133 * 17 16 15 19 19 C 1.51316 * 109.20311 * 180.02562 * 17 16 15 20 20 C 1.54229 * 103.55685 * 359.97438 * 19 17 16 21 21 C 1.33870 * 122.75844 * 85.50719 * 16 15 13 22 22 O 1.21224 * 125.39881 * 359.97438 * 21 16 15 23 23 C 1.53177 * 109.53986 * 65.59917 * 11 10 9 24 24 C 1.53279 * 109.06184 * 176.85272 * 23 11 10 25 25 O 1.42902 * 109.46248 * 302.44303 * 24 23 11 26 26 C 1.42909 * 114.09450 * 61.15972 * 25 24 23 27 27 C 1.53092 * 109.41317 * 298.84243 * 26 25 24 28 28 H 0.97005 * 120.00408 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99520 * 4.94906 * 9 7 2 30 30 H 1.08999 * 109.47036 * 65.05569 * 10 9 7 31 31 H 1.09001 * 109.47031 * 305.05873 * 10 9 7 32 32 H 0.96994 * 120.00354 * 118.88225 * 12 11 10 33 33 H 1.09006 * 109.46522 * 65.23646 * 15 13 12 34 34 H 1.08995 * 109.46934 * 305.24461 * 15 13 12 35 35 H 1.09008 * 110.60477 * 241.47792 * 19 17 16 36 36 H 1.08994 * 110.60682 * 118.51869 * 19 17 16 37 37 H 1.09003 * 110.60154 * 118.51820 * 20 19 17 38 38 H 1.09001 * 110.60539 * 241.48295 * 20 19 17 39 39 H 1.09001 * 109.52523 * 296.84524 * 23 11 10 40 40 H 1.09001 * 109.52483 * 57.03108 * 23 11 10 41 41 H 1.09004 * 109.46212 * 182.45089 * 24 23 11 42 42 H 1.08999 * 109.47121 * 62.45048 * 24 23 11 43 43 H 1.08997 * 109.47877 * 178.86287 * 26 25 24 44 44 H 1.08998 * 109.49184 * 58.83204 * 26 25 24 45 45 H 1.09001 * 109.52240 * 297.69923 * 27 26 25 46 46 H 1.09003 * 109.57183 * 177.54595 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4232 2.0894 -1.3974 5 1 1.4869 2.6299 0.7732 6 1 3.5830 1.4197 0.6243 7 6 2.0101 -1.2022 -0.0005 8 1 1.4725 -2.1361 -0.0725 9 7 3.3766 -1.2040 0.0903 10 6 4.1163 -2.4637 -0.0193 11 6 5.6021 -2.2070 0.2405 12 7 6.0834 -1.1584 -0.6622 13 6 6.0335 -1.3427 -1.9964 14 8 5.5106 -2.3376 -2.4521 15 6 6.6273 -0.3124 -2.9222 16 7 6.3373 -0.6785 -4.3107 17 6 7.1913 -1.3768 -5.0693 18 8 8.2771 -1.7816 -4.7136 19 6 6.5861 -1.5809 -6.4411 20 6 5.2196 -0.8725 -6.3424 21 6 5.1968 -0.3419 -4.9255 22 8 4.2892 0.2878 -4.4262 23 6 5.7989 -1.7626 1.6931 24 6 7.2971 -1.5846 1.9635 25 8 7.9793 -2.8101 1.6896 26 6 7.8679 -3.2494 0.3342 27 6 6.3947 -3.4952 -0.0016 28 1 -0.4851 0.8401 0.0004 29 1 3.8546 -0.3712 0.2272 30 1 3.9883 -2.8743 -1.0209 31 1 3.7362 -3.1734 0.7155 32 1 6.4379 -0.3315 -0.2998 33 1 7.7066 -0.2710 -2.7751 34 1 6.1935 0.6638 -2.7055 35 1 6.4533 -2.6429 -6.6476 36 1 7.2058 -1.1147 -7.2070 37 1 5.1595 -0.0536 -7.0593 38 1 4.4074 -1.5822 -6.5000 39 1 5.2819 -0.8173 1.8581 40 1 5.3956 -2.5212 2.3639 41 1 7.4476 -1.3105 3.0077 42 1 7.6914 -0.7976 1.3207 43 1 8.4295 -4.1746 0.2047 44 1 8.2695 -2.4843 -0.3302 45 1 6.0034 -4.2888 0.6350 46 1 6.3026 -3.7884 -1.0474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673752183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:55 Heat of formation + Delta-G solvation = -115.494802 kcal Electronic energy + Delta-G solvation = -31947.758619 eV Core-core repulsion = 27645.840603 eV Total energy + Delta-G solvation = -4301.918016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.07244 -40.56886 -38.64975 -38.42808 -36.07891 -35.78541 -33.80683 -33.63287 -31.90191 -31.18101 -30.76598 -28.09801 -26.78124 -26.34226 -23.76962 -23.38459 -22.53424 -21.74783 -21.25319 -19.59916 -19.30095 -17.94015 -17.73602 -17.44879 -16.62171 -16.51826 -16.10858 -16.02178 -15.47672 -15.10603 -14.85379 -14.61148 -14.35686 -14.30245 -14.25467 -14.03906 -13.66605 -13.55153 -13.31365 -12.98860 -12.81665 -12.64544 -12.52212 -12.32222 -11.90353 -11.80166 -11.60218 -11.29878 -11.16580 -10.84428 -10.81678 -10.71934 -10.42345 -10.31315 -10.15256 -10.11725 -9.66145 -9.56800 -9.37358 -8.85588 -8.73461 -7.12876 -5.71505 -3.05192 1.42336 2.15704 2.59438 2.68386 3.26084 3.30875 3.42855 3.47644 3.85146 3.87490 4.02457 4.21797 4.51577 4.62109 4.62847 4.76767 4.81136 4.85953 4.95291 4.98147 5.01863 5.15169 5.18213 5.22372 5.33289 5.35320 5.40849 5.58485 5.63343 5.64237 5.72452 5.89690 5.92956 6.04012 6.17613 6.24921 6.37547 6.63517 6.73507 6.92119 7.15269 7.18367 7.51993 7.66572 8.06162 8.27846 8.47437 9.27377 9.99291 10.19937 11.47408 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008212 B = 0.006009 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3408.874484 B = 4658.253664 C = 7193.172737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.088 0.912 9 N -0.749 5.749 10 C 0.149 3.851 11 C 0.172 3.828 12 N -0.715 5.715 13 C 0.510 3.490 14 O -0.514 6.514 15 C 0.076 3.924 16 N -0.557 5.557 17 C 0.534 3.466 18 O -0.488 6.488 19 C -0.153 4.153 20 C -0.153 4.153 21 C 0.523 3.477 22 O -0.459 6.459 23 C -0.155 4.155 24 C 0.061 3.939 25 O -0.383 6.383 26 C 0.067 3.933 27 C -0.162 4.162 28 H 0.258 0.742 29 H 0.359 0.641 30 H 0.049 0.951 31 H 0.034 0.966 32 H 0.396 0.604 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.855 -1.407 -8.857 21.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.191 4.191 3 Si 0.717 3.283 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.366 4.366 8 H 0.106 0.894 9 N -0.395 5.395 10 C 0.021 3.979 11 C 0.086 3.914 12 N -0.368 5.368 13 C 0.294 3.706 14 O -0.389 6.389 15 C -0.049 4.049 16 N -0.301 5.301 17 C 0.323 3.677 18 O -0.360 6.360 19 C -0.193 4.193 20 C -0.193 4.193 21 C 0.311 3.689 22 O -0.328 6.328 23 C -0.193 4.193 24 C -0.016 4.016 25 O -0.302 6.302 26 C -0.010 4.010 27 C -0.201 4.201 28 H 0.068 0.932 29 H 0.192 0.808 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.230 0.770 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.100 0.900 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.418 -2.192 -8.598 21.350 hybrid contribution 0.370 1.885 0.140 1.926 sum 19.788 -0.307 -8.458 21.522 Atomic orbital electron populations 1.69701 1.05059 1.25582 1.57948 1.24649 0.95188 0.96990 1.02262 0.86533 0.78610 0.85387 0.77765 1.20884 1.21920 1.21061 1.19027 0.80827 0.94628 1.42089 0.89432 1.42604 1.04232 1.03413 1.89242 1.21046 0.86729 0.89982 1.00167 1.20703 0.95598 0.86831 0.88264 1.45928 1.65027 1.20350 1.05522 1.20438 0.79508 0.87633 0.83003 1.90675 1.42484 1.29724 1.76031 1.21574 1.03544 0.99589 0.80180 1.46287 1.19960 1.50975 1.12838 1.20794 0.83688 0.75230 0.87990 1.90757 1.19784 1.47718 1.77723 1.22439 0.96494 1.05098 0.95248 1.22446 0.99285 1.03107 0.94469 1.20876 0.80452 0.78440 0.89116 1.90910 1.34866 1.35924 1.71092 1.22488 0.96915 1.04433 0.95465 1.22635 0.91338 0.86319 1.01314 1.87912 1.73594 1.40472 1.28246 1.22510 0.95916 0.99575 0.83019 1.22519 0.95484 0.97557 1.04540 0.93198 0.80812 0.93284 0.94835 0.77026 0.85957 0.86337 0.86025 0.86231 0.86196 0.85880 0.89556 0.89029 0.88702 0.93628 0.89088 0.93530 0.89994 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.29 13.97 55.49 0.78 -29.52 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 22.88 27.98 -169.99 -4.76 18.13 16 4 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.28 -6.59 6.19 56.52 0.35 -6.24 16 7 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 N -0.75 -18.17 4.95 -59.91 -0.30 -18.47 16 10 C 0.15 3.06 4.88 -4.04 -0.02 3.04 16 11 C 0.17 2.66 0.32 -131.64 -0.04 2.62 16 12 N -0.72 -10.24 3.56 -47.44 -0.17 -10.41 16 13 C 0.51 8.04 7.28 -10.98 -0.08 7.96 16 14 O -0.51 -9.82 12.75 5.56 0.07 -9.75 16 15 C 0.08 0.96 6.04 -5.19 -0.03 0.93 16 16 N -0.56 -7.06 2.05 -116.63 -0.24 -7.30 16 17 C 0.53 6.00 8.08 -11.09 -0.09 5.91 16 18 O -0.49 -6.76 17.41 5.61 0.10 -6.66 16 19 C -0.15 -1.01 7.03 -26.94 -0.19 -1.20 16 20 C -0.15 -1.18 7.03 -26.94 -0.19 -1.37 16 21 C 0.52 7.08 8.06 -11.09 -0.09 6.99 16 22 O -0.46 -8.61 17.55 5.61 0.10 -8.51 16 23 C -0.15 -2.12 4.82 -26.50 -0.13 -2.25 16 24 C 0.06 0.69 6.67 37.30 0.25 0.94 16 25 O -0.38 -4.96 10.77 -35.23 -0.38 -5.34 16 26 C 0.07 0.81 6.68 37.20 0.25 1.06 16 27 C -0.16 -2.28 4.75 -26.59 -0.13 -2.41 16 28 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 29 H 0.36 8.35 4.40 -40.82 -0.18 8.17 16 30 H 0.05 1.14 6.27 -51.93 -0.33 0.82 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.40 4.60 7.57 -40.82 -0.31 4.29 16 33 H 0.12 1.19 7.73 -51.93 -0.40 0.79 16 34 H 0.12 1.40 7.94 -51.93 -0.41 0.99 16 35 H 0.12 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.27 7.43 -51.93 -0.39 0.88 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.45 7.12 -51.93 -0.37 0.08 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.56 7.75 -51.93 -0.40 0.15 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.09 1.47 6.21 -51.93 -0.32 1.14 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -39.98 371.05 -6.47 -46.45 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -6.52 Total: 10.62 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: -0.74 Total: 15.16 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: 0.07 Total: -65.69 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.11 Total: -30.26 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.76 Total: 18.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -39.98 -6.47 -46.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673752183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.042 kcal (2) G-P(sol) polarization free energy of solvation -39.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds