Wall clock time and date at job start Tue Mar 31 2020 23:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00184 * 2 1 4 4 H 1.48500 * 109.47318 * 273.52193 * 3 2 1 5 5 H 1.48498 * 109.47073 * 33.52457 * 3 2 1 6 6 H 1.48507 * 109.47085 * 153.52093 * 3 2 1 7 7 C 1.38813 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00339 * 4.38881 * 7 2 1 9 9 N 1.36944 * 120.00039 * 184.39360 * 7 2 1 10 10 C 1.46496 * 120.00234 * 184.95521 * 9 7 2 11 11 C 1.53002 * 109.47288 * 185.05326 * 10 9 7 12 12 N 1.46496 * 109.54362 * 305.42657 * 11 10 9 13 13 C 1.34777 * 119.99654 * 298.88228 * 12 11 10 14 14 O 1.21280 * 120.00288 * 4.83423 * 13 12 11 15 15 C 1.50703 * 120.00190 * 184.83050 * 13 12 11 16 16 N 1.46501 * 109.47345 * 185.23514 * 15 13 12 17 17 C 1.33874 * 122.76216 * 265.48390 * 16 15 13 18 18 O 1.21220 * 125.40067 * 0.04133 * 17 16 15 19 19 C 1.51316 * 109.20311 * 180.02562 * 17 16 15 20 20 C 1.54229 * 103.55685 * 359.97438 * 19 17 16 21 21 C 1.33870 * 122.75844 * 85.50719 * 16 15 13 22 22 O 1.21224 * 125.39881 * 359.97438 * 21 16 15 23 23 C 1.53177 * 109.53986 * 65.59917 * 11 10 9 24 24 C 1.53279 * 109.06184 * 176.85272 * 23 11 10 25 25 O 1.42902 * 109.46248 * 302.44303 * 24 23 11 26 26 C 1.42909 * 114.09450 * 61.15972 * 25 24 23 27 27 C 1.53092 * 109.41317 * 298.84243 * 26 25 24 28 28 H 0.97005 * 120.00408 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99520 * 4.94906 * 9 7 2 30 30 H 1.08999 * 109.47036 * 65.05569 * 10 9 7 31 31 H 1.09001 * 109.47031 * 305.05873 * 10 9 7 32 32 H 0.96994 * 120.00354 * 118.88225 * 12 11 10 33 33 H 1.09006 * 109.46522 * 65.23646 * 15 13 12 34 34 H 1.08995 * 109.46934 * 305.24461 * 15 13 12 35 35 H 1.09008 * 110.60477 * 241.47792 * 19 17 16 36 36 H 1.08994 * 110.60682 * 118.51869 * 19 17 16 37 37 H 1.09003 * 110.60154 * 118.51820 * 20 19 17 38 38 H 1.09001 * 110.60539 * 241.48295 * 20 19 17 39 39 H 1.09001 * 109.52523 * 296.84524 * 23 11 10 40 40 H 1.09001 * 109.52483 * 57.03108 * 23 11 10 41 41 H 1.09004 * 109.46212 * 182.45089 * 24 23 11 42 42 H 1.08999 * 109.47121 * 62.45048 * 24 23 11 43 43 H 1.08997 * 109.47877 * 178.86287 * 26 25 24 44 44 H 1.08998 * 109.49184 * 58.83204 * 26 25 24 45 45 H 1.09001 * 109.52240 * 297.69923 * 27 26 25 46 46 H 1.09003 * 109.57183 * 177.54595 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4232 2.0894 -1.3974 5 1 1.4869 2.6299 0.7732 6 1 3.5830 1.4197 0.6243 7 6 2.0101 -1.2022 -0.0005 8 1 1.4725 -2.1361 -0.0725 9 7 3.3766 -1.2040 0.0903 10 6 4.1163 -2.4637 -0.0193 11 6 5.6021 -2.2070 0.2405 12 7 6.0834 -1.1584 -0.6622 13 6 6.0335 -1.3427 -1.9964 14 8 5.5106 -2.3376 -2.4521 15 6 6.6273 -0.3124 -2.9222 16 7 6.3373 -0.6785 -4.3107 17 6 7.1913 -1.3768 -5.0693 18 8 8.2771 -1.7816 -4.7136 19 6 6.5861 -1.5809 -6.4411 20 6 5.2196 -0.8725 -6.3424 21 6 5.1968 -0.3419 -4.9255 22 8 4.2892 0.2878 -4.4262 23 6 5.7989 -1.7626 1.6931 24 6 7.2971 -1.5846 1.9635 25 8 7.9793 -2.8101 1.6896 26 6 7.8679 -3.2494 0.3342 27 6 6.3947 -3.4952 -0.0016 28 1 -0.4851 0.8401 0.0004 29 1 3.8546 -0.3712 0.2272 30 1 3.9883 -2.8743 -1.0209 31 1 3.7362 -3.1734 0.7155 32 1 6.4379 -0.3315 -0.2998 33 1 7.7066 -0.2710 -2.7751 34 1 6.1935 0.6638 -2.7055 35 1 6.4533 -2.6429 -6.6476 36 1 7.2058 -1.1147 -7.2070 37 1 5.1595 -0.0536 -7.0593 38 1 4.4074 -1.5822 -6.5000 39 1 5.2819 -0.8173 1.8581 40 1 5.3956 -2.5212 2.3639 41 1 7.4476 -1.3105 3.0077 42 1 7.6914 -0.7976 1.3207 43 1 8.4295 -4.1746 0.2047 44 1 8.2695 -2.4843 -0.3302 45 1 6.0034 -4.2888 0.6350 46 1 6.3026 -3.7884 -1.0474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673752183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:54 Heat of formation + Delta-G solvation = -147.652604 kcal Electronic energy + Delta-G solvation = -31949.153086 eV Core-core repulsion = 27645.840603 eV Total energy + Delta-G solvation = -4303.312483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.01637 -41.75952 -39.69108 -39.56009 -37.45794 -36.90942 -35.60309 -34.52897 -33.47659 -32.62234 -32.14933 -29.10341 -28.40153 -27.13108 -25.22407 -24.72327 -23.35994 -23.20286 -22.62877 -20.63730 -20.55908 -19.83181 -19.00673 -18.43090 -17.55915 -17.49768 -17.23194 -17.03966 -16.80340 -16.52552 -16.31421 -15.83013 -15.62832 -15.36921 -15.30757 -15.27723 -14.97628 -14.91314 -14.53206 -14.37391 -14.07528 -13.86869 -13.59530 -13.50758 -13.39042 -13.15979 -12.92764 -12.88761 -12.36690 -12.15648 -12.13819 -11.91945 -11.85718 -11.76405 -11.59040 -11.34153 -11.13948 -11.09279 -10.72834 -10.50264 -10.08528 -9.30578 -8.08224 -5.40711 0.49095 1.21483 1.22676 1.37533 1.39271 1.48018 1.69293 2.15317 2.41961 2.91285 3.18539 3.22731 3.24355 3.37801 3.49898 3.61028 3.69177 3.75339 3.89604 3.94845 4.02285 4.03526 4.16536 4.21208 4.25581 4.36904 4.54890 4.67691 4.72136 4.72564 4.74728 4.79086 4.87764 4.89331 4.99760 5.03125 5.08940 5.09816 5.46585 5.69159 5.72744 6.14732 6.20093 6.28079 6.37609 6.69651 7.02490 7.10119 7.76134 7.99725 9.13857 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008212 B = 0.006009 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3408.874484 B = 4658.253664 C = 7193.172737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.957 3.043 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.240 1.240 7 C -0.233 4.233 8 H 0.046 0.954 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.179 3.821 12 N -0.708 5.708 13 C 0.501 3.499 14 O -0.555 6.555 15 C 0.073 3.927 16 N -0.564 5.564 17 C 0.527 3.473 18 O -0.516 6.516 19 C -0.137 4.137 20 C -0.142 4.142 21 C 0.513 3.487 22 O -0.526 6.526 23 C -0.151 4.151 24 C 0.064 3.936 25 O -0.391 6.391 26 C 0.074 3.926 27 C -0.155 4.155 28 H 0.258 0.742 29 H 0.367 0.633 30 H 0.019 0.981 31 H 0.026 0.974 32 H 0.412 0.588 33 H 0.152 0.848 34 H 0.125 0.875 35 H 0.139 0.861 36 H 0.159 0.841 37 H 0.154 0.846 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.054 0.946 45 H 0.080 0.920 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.411 -0.111 -9.529 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.784 3.216 4 H -0.219 1.219 5 H -0.216 1.216 6 H -0.164 1.164 7 C -0.365 4.365 8 H 0.064 0.936 9 N -0.388 5.388 10 C 0.022 3.978 11 C 0.093 3.907 12 N -0.362 5.362 13 C 0.287 3.713 14 O -0.432 6.432 15 C -0.052 4.052 16 N -0.307 5.307 17 C 0.319 3.681 18 O -0.390 6.390 19 C -0.176 4.176 20 C -0.181 4.181 21 C 0.305 3.695 22 O -0.399 6.399 23 C -0.189 4.189 24 C -0.013 4.013 25 O -0.310 6.310 26 C -0.003 4.003 27 C -0.194 4.194 28 H 0.067 0.933 29 H 0.201 0.799 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.249 0.751 33 H 0.170 0.830 34 H 0.143 0.857 35 H 0.157 0.843 36 H 0.177 0.823 37 H 0.172 0.828 38 H 0.148 0.852 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.135 0.865 42 H 0.085 0.915 43 H 0.124 0.876 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 23.061 -0.913 -9.258 24.867 hybrid contribution -0.804 1.338 0.332 1.596 sum 22.257 0.425 -8.926 23.984 Atomic orbital electron populations 1.69892 1.07193 1.26653 1.59587 1.25518 0.96171 1.01243 1.02435 0.85383 0.79270 0.79593 0.77376 1.21896 1.21560 1.16387 1.18957 0.83076 0.93189 1.41233 0.93632 1.42439 1.02452 1.05059 1.88885 1.21073 0.90351 0.88221 0.98134 1.20504 0.91964 0.88324 0.89930 1.45863 1.64430 1.20730 1.05157 1.21098 0.78851 0.87711 0.83641 1.90661 1.44232 1.31570 1.76776 1.21703 1.05057 0.98507 0.79983 1.46556 1.20227 1.50966 1.12911 1.21635 0.83065 0.73979 0.89386 1.90741 1.20993 1.48671 1.78607 1.22582 0.95583 1.06369 0.93034 1.22589 1.00262 1.04190 0.91084 1.21925 0.79439 0.76962 0.91193 1.90867 1.37002 1.39116 1.72939 1.22461 0.99194 1.03756 0.93476 1.22758 0.88966 0.86321 1.03211 1.87919 1.73508 1.41245 1.28306 1.22488 0.94086 1.00634 0.83044 1.22435 0.97045 0.96627 1.03325 0.93330 0.79872 0.96333 0.95610 0.75126 0.83016 0.85718 0.84334 0.82290 0.82809 0.85193 0.90121 0.89657 0.86505 0.91514 0.87593 0.92814 0.90136 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.90 13.97 21.65 0.30 -65.60 16 2 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 3 Si 0.96 47.45 27.98 68.60 1.92 49.37 16 4 H -0.29 -14.98 7.11 99.48 0.71 -14.28 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.24 -10.00 6.19 99.48 0.62 -9.38 16 7 C -0.23 -14.28 10.47 84.03 0.88 -13.40 16 8 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 9 N -0.74 -36.52 4.95 -343.45 -1.70 -38.22 16 10 C 0.15 6.37 4.88 86.38 0.42 6.79 16 11 C 0.18 5.44 0.32 3.72 0.00 5.44 16 12 N -0.71 -19.30 3.56 -422.39 -1.50 -20.80 16 13 C 0.50 15.59 7.28 87.66 0.64 16.23 16 14 O -0.55 -21.71 12.75 -3.03 -0.04 -21.75 16 15 C 0.07 1.74 6.04 85.63 0.52 2.25 16 16 N -0.56 -13.69 2.05 -760.74 -1.56 -15.25 16 17 C 0.53 10.82 8.08 87.99 0.71 11.53 16 18 O -0.52 -13.38 17.41 -2.85 -0.05 -13.43 16 19 C -0.14 -1.32 7.03 30.46 0.21 -1.10 16 20 C -0.14 -1.83 7.03 30.46 0.21 -1.61 16 21 C 0.51 13.59 8.06 87.99 0.71 14.30 16 22 O -0.53 -20.15 17.55 -2.86 -0.05 -20.20 16 23 C -0.15 -3.84 4.82 30.75 0.15 -3.69 16 24 C 0.06 1.22 6.67 72.08 0.48 1.71 16 25 O -0.39 -8.91 10.77 -148.98 -1.60 -10.51 16 26 C 0.07 1.64 6.68 72.01 0.48 2.13 16 27 C -0.16 -4.30 4.75 30.68 0.15 -4.15 16 28 H 0.26 16.39 8.31 -92.70 -0.77 15.62 16 29 H 0.37 16.67 4.40 -92.71 -0.41 16.26 16 30 H 0.02 0.92 6.27 -2.39 -0.01 0.91 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.41 8.44 7.57 -92.71 -0.70 7.73 16 33 H 0.15 2.61 7.73 -2.38 -0.02 2.60 16 34 H 0.12 2.80 7.94 -2.39 -0.02 2.78 16 35 H 0.14 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.16 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 2.17 7.43 -2.39 -0.02 2.15 16 40 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.07 1.03 7.12 -2.39 -0.02 1.01 16 43 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.05 1.13 7.75 -2.39 -0.02 1.11 16 45 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.07 2.37 6.21 -2.39 -0.01 2.35 16 Total: -1.00 -93.24 371.05 1.57 -91.67 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.17 Total: 31.70 kcal Atomic # 6 Polarization: 26.99 SS G_CDS: 6.03 Total: 33.02 kcal Atomic # 7 Polarization: -135.40 SS G_CDS: -4.46 Total: -139.87 kcal Atomic # 8 Polarization: -64.15 SS G_CDS: -1.74 Total: -65.89 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.92 Total: 49.37 kcal Total: -93.24 1.57 -91.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673752183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.985 kcal (2) G-P(sol) polarization free energy of solvation -93.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds